Prupe.7G061700_v2.0.a1

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011779
Physical Location & Seq
Reverse (-)
10084822 .. 10086834
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G061700.1

Sequence Viewer

Length: 1125 bp
ATGGCGCCTTTTTCTCTCTTGCTTTGCTTCCTCACCTTTTTCTCCCTCTGCGCTGGTTATGCTTCTGCTGCTGCCGCCGCCGCTGCTGCACCTCTTGATGGGGAACTCCCAAATGGGCACTTTGAAGAAGCACCCAAGCCTTCAAACTTGAAGAAAACAGTGATCATTGGGAAGTACTCACTCCCAAAATGGGAGATCAGCGGCTTGGTGGAGTACATCAAAGGTGGGCCCCAGCCAGGTGGCTTCTTCTTCCCTGTGCCACGTGGGGTCCATGCAGTGAGGCTTGGCAATGAGGCCTCCATTTCTCAGGATGTGGTTGTTACCCAAGGTTCAGTCTACTCACTAACCTTTGGTGCTACAAGGACTTGTTCCCAAGATGAGGTGCTTAGGATTTCAATACCTGGCCAGTCTGCTGACCTCTCCCTTCAAACCCTGTATAGCAGTGATGGGGGAGACACTTATGCTTGGGCTTTTAGGGCTACTTCCAAGGTTGTTAAGGTGACATTCCACAACCTTGGGGTTCAGGAGGACCCCACTTGTGGGCCCCTATTGGATGCTATTGCAATCAAGGAGATACTTCCTCTCAAGTACATAAGAGGCACTCTAGTGAAAAATGGTGGGTTTGAAAGTGGTCCTCATGTGTTCAAAAACTTCTCAACCGGAATCCTCCTCCCTCCCAAGGCAAAGGACCAAATCTCACCATTGCCTGGATGGATCATTGAATCCCTGAAGCCTGTGAAATACATTGACAAGAAGCACTTCCAAGTTCCTGGGGGACTTGCAGCCATTGAACTGGTTGCAGGGAGAGAAAGTGCAATTGCCCAAATCATTAGAACCATTCCAAACAAATTCTACAACCTTACCTTCACCATCGGAGACGCGAAGAACGCTTGCCACGGATCGATGATGGTCGAAGCCTTTGCCGGTAAGGAAACCCTAAAAGTTCCTTATATGTCTCAAGGCAAAGGTGGGTTCAAAACTGCAAGCTTCAAGTTCCAAGCAACTTCACCAAGAACAAGAATAACATTTTACAGTGCCTACTATCACACAAAGCTTCATGACTTTGGTCATATGTGTGGACCTGTCTTGGATAATGTTATCGTTCTTCCAGTCTCTAGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

375

Amino Acids

40.35

Weight (kDa)

9.04

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41800 AT2G41810
fragaria_vesca FvH4_6g23670
malus_domestica MD14G1071300.v1.1
prunus_persica Prupe.7G061700_v2.0.a1
pyrus_communis pycom14g06080
rosa_chinensis RchiOBHm_Chr3g0482101
rosa_laevigata RLG00000023374
rosa_multiflora Rmu_co8504877.1_g000001 Rmu_sc0000192.1_g000028 Rmu_sc0001738.1_g000034
rosa_roxburghii Rroxscaffold_6G00399700 Rroxscaffold_6G00400070
rosa_rugosa Rorug03G0194800
rosa_samantha Rh3AG246000 Rh3BG281100 Rh3CG277200 Rh3DG273500
rosa_wichuraiana Rw3G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 707
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 881
AciI CCGC 4 cut(s) 75, 78, 81, 201
AclWI GGATC 2 cut(s) 722, 907
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 848
AcuI CTGAAG 1 cut(s) 749
AcvI CACGTG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 176, 215, 590
AfiI CCNNNNNNNGG 8 cut(s) 98, 190, 236, 379, 539, 540, 679, 707
AjnI CCWGG 4 cut(s) 235, 400, 706, 769
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 2 cut(s) 987, 1054
AluI AGCT 2 cut(s) 987, 1054
Alw26I GTCTC 4 cut(s) 447, 870, 960, 1117
AlwI GGATC 2 cut(s) 722, 907
AoxI GGCC 4 cut(s) 227, 294, 403, 542
ApaI GGGCCC 2 cut(s) 231, 546
ApeKI GCWGC 5 cut(s) 68, 71, 83, 86, 782
ApoI RAATTY 1 cut(s) 848
Asp700I GAANNNNTTC 1 cut(s) 758
AspLEI GCGC 2 cut(s) 7, 53
AspS9I GGNCC 9 cut(s) 227, 228, 268, 529, 542, 543, 632, 688, 1079
AsuHPI GGTGA 5 cut(s) 25, 511, 690, 859, 999
AvaII GGWCC 5 cut(s) 268, 529, 632, 688, 1079
BaeGI GKGCMC 3 cut(s) 120, 231, 546
BalI TGGCCA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 231, 546
BbrPI CACGTG 1 cut(s) 263
BbvI GCAGC 5 cut(s) 55, 58, 70, 73, 794
BccI CCATC 5 cut(s) 92, 440, 705, 878, 901
BcgI CGANNNNNNTGC 2 cut(s) 902, 936
BciT130I CCWGG 4 cut(s) 237, 402, 708, 771
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 4 cut(s) 447, 870, 960, 1117
BfaI CTAG 2 cut(s) 605, 1116
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 9 cut(s) 69, 72, 75, 78, 81, 84, 87, 202, 783
BlsI GCNGC 9 cut(s) 70, 73, 76, 79, 82, 85, 88, 203, 784
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 4 cut(s) 237, 402, 708, 771
Bme18I GGWCC 5 cut(s) 268, 529, 632, 688, 1079
BmgT120I GGNCC 9 cut(s) 227, 228, 268, 529, 542, 543, 632, 688, 1079
BmiI GGNNCC 7 cut(s) 6, 229, 230, 269, 531, 544, 545
BmrFI CCNGG 4 cut(s) 237, 402, 708, 771
BmsI GCATC 1 cut(s) 544
BoxI GACNNNNGTC 1 cut(s) 1065
Bpu10I CCTNAGC 1 cut(s) 386
BpuEI CTTGAG 2 cut(s) 569, 942
Bsa29I ATCGAT 1 cut(s) 902
BsaAI YACGTR 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 6 cut(s) 325, 486, 514, 678, 770, 895
BsaWI WCCGGW 1 cut(s) 659
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 8 cut(s) 98, 190, 236, 379, 539, 540, 679, 707
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 3 cut(s) 406, 798, 1109
Bse3DI GCAATG 2 cut(s) 295, 701
BseBI CCWGG 4 cut(s) 237, 402, 708, 771
BseCI ATCGAT 1 cut(s) 902
BseDI CCNNGG 6 cut(s) 325, 486, 514, 678, 770, 895
BseGI GGATG 3 cut(s) 316, 559, 716
BseLI CCNNNNNNNGG 8 cut(s) 98, 190, 236, 379, 539, 540, 679, 707
BseMI GCAATG 2 cut(s) 295, 701
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 3 cut(s) 406, 798, 1109
BseRI GAGGAG 1 cut(s) 659
BseSI GKGCMC 3 cut(s) 120, 231, 546
BseXI GCAGC 5 cut(s) 55, 58, 70, 73, 794
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 881
BshFI GGCC 4 cut(s) 229, 296, 405, 544
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 902
BsiSI CCGG 2 cut(s) 660, 924
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 8 cut(s) 98, 190, 236, 379, 539, 540, 679, 707
BsmAI GTCTC 4 cut(s) 447, 870, 960, 1117
BsmBI CGTCTC 1 cut(s) 870
BsmFI GGGAC 1 cut(s) 789
BsnI GGCC 4 cut(s) 229, 296, 405, 544
Bsp120I GGGCCC 2 cut(s) 227, 542
Bsp1286I GDGCHC 3 cut(s) 120, 231, 546
Bsp143I GATC 4 cut(s) 162, 195, 714, 899
BspACI CCGC 4 cut(s) 75, 78, 81, 201
BspANI GGCC 4 cut(s) 229, 296, 405, 544
BspCNI CTCAG 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 902
BspFNI CGCG 1 cut(s) 881
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 7 cut(s) 6, 229, 230, 269, 531, 544, 545
BspPI GGATC 2 cut(s) 722, 907
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 295, 701
BsrFI RCCGGY 1 cut(s) 923
BsrI ACTGG 3 cut(s) 406, 798, 1109
BssAI RCCGGY 1 cut(s) 923
BssECI CCNNGG 6 cut(s) 325, 486, 514, 678, 770, 895
BssMI GATC 4 cut(s) 162, 195, 714, 899
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 325, 486, 514, 678
Bst2UI CCWGG 4 cut(s) 237, 402, 708, 771
Bst4CI ACNGT 2 cut(s) 160, 1034
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 892, 985
BstDEI CTNAG 2 cut(s) 306, 386
BstDSI CCRYGG 1 cut(s) 895
BstF5I GGATG 3 cut(s) 316, 559, 716
BstFNI CGCG 1 cut(s) 881
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 53
BstKTI GATC 4 cut(s) 165, 198, 717, 902
BstMAI GTCTC 4 cut(s) 447, 870, 960, 1117
BstMBI GATC 4 cut(s) 162, 195, 714, 899
BstMWI GCNNNNNNNGC 9 cut(s) 59, 68, 74, 77, 80, 83, 86, 476, 887
BstNI CCWGG 4 cut(s) 237, 402, 708, 771
BstPAI GACNNNNGTC 1 cut(s) 1065
BstSCI CCNGG 4 cut(s) 235, 400, 706, 769
BstSLI GKGCMC 3 cut(s) 120, 231, 546
BstUI CGCG 1 cut(s) 881
BstV1I GCAGC 5 cut(s) 55, 58, 70, 73, 794
BstXI CCANNNNNNTGG 4 cut(s) 239, 515, 770, 793
Bsu15I ATCGAT 1 cut(s) 902
BsuRI GGCC 4 cut(s) 229, 296, 405, 544
BsuTUI ATCGAT 1 cut(s) 902
BtgI CCRYGG 1 cut(s) 895
BtsCI GGATG 3 cut(s) 316, 559, 716
BtsI GCAGTG 2 cut(s) 282, 448
BtsIMutI CAGTG 4 cut(s) 165, 282, 448, 1039
Cac8I GCNNGC 2 cut(s) 892, 985
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 2 cut(s) 7, 53
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 9 cut(s) 227, 228, 268, 529, 542, 543, 632, 688, 1079
ClaI ATCGAT 1 cut(s) 902
CseI GACGC 1 cut(s) 887
Csp6I GTAC 3 cut(s) 175, 214, 589
CviAII CATG 3 cut(s) 272, 638, 1058
CviQI GTAC 3 cut(s) 175, 214, 589
DdeI CTNAG 2 cut(s) 306, 386
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 164, 197, 716, 901
DpnII GATC 4 cut(s) 162, 195, 714, 899
EaeI YGGCCR 1 cut(s) 403
Eco130I CCWWGG 4 cut(s) 325, 486, 514, 678
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 2 cut(s) 231, 546
Eco47I GGWCC 5 cut(s) 268, 529, 632, 688, 1079
Eco57I CTGAAG 1 cut(s) 749
Eco72I CACGTG 1 cut(s) 263
EcoO109I RGGNCCY 3 cut(s) 228, 529, 543
EcoRII CCWGG 4 cut(s) 235, 400, 706, 769
EcoT14I CCWWGG 4 cut(s) 325, 486, 514, 678
EcoT38I GRGCYC 2 cut(s) 231, 546
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 4 cut(s) 325, 486, 514, 678
Esp3I CGTCTC 1 cut(s) 870
FaeI CATG 3 cut(s) 275, 641, 1061
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 1 cut(s) 789
FatI CATG 3 cut(s) 271, 637, 1057
FauNDI CATATG 1 cut(s) 1071
FbaI TGATCA 1 cut(s) 162
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 9 cut(s) 69, 72, 75, 78, 81, 84, 87, 202, 783
FokI GGATG 3 cut(s) 323, 566, 723
FriOI GRGCYC 2 cut(s) 231, 546
Fsp4HI GCNGC 9 cut(s) 69, 72, 75, 78, 81, 84, 87, 202, 783
FspBI CTAG 2 cut(s) 605, 1116
GlaI GCGC 2 cut(s) 6, 52
GluI GCNGC 9 cut(s) 69, 72, 75, 78, 81, 84, 87, 202, 783
GsaI CCCAGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 229, 296, 405, 544
HapII CCGG 2 cut(s) 660, 924
HgaI GACGC 1 cut(s) 887
HhaI GCGC 2 cut(s) 7, 53
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 275, 641, 1061
Hin6I GCGC 2 cut(s) 5, 51
HinP1I GCGC 2 cut(s) 5, 51
HindIII AAGCTT 2 cut(s) 985, 1052
HinfI GANTC 2 cut(s) 663, 722
HpaII CCGG 2 cut(s) 660, 924
HphI GGTGA 5 cut(s) 25, 511, 690, 859, 999
Hpy166II GTNNAC 2 cut(s) 337, 1079
Hpy188I TCNGA 1 cut(s) 875
Hpy188III TCNNGA 4 cut(s) 95, 308, 524, 1058
Hpy8I GTNNAC 2 cut(s) 337, 1079
HpyAV CCTTC 3 cut(s) 150, 434, 874
HpyCH4III ACNGT 2 cut(s) 160, 1034
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 7 cut(s) 89, 275, 563, 782, 800, 815, 983
HpyF10VI GCNNNNNNNGC 9 cut(s) 59, 68, 74, 77, 80, 83, 86, 476, 887
HpyF3I CTNAG 2 cut(s) 306, 386
HpySE526I ACGT 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 275, 641, 1061
HspAI GCGC 2 cut(s) 5, 51
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 4 cut(s) 162, 195, 714, 899
Lsp1109I GCAGC 5 cut(s) 55, 58, 70, 73, 794
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 605, 1116
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 319, 499
MalI GATC 4 cut(s) 164, 197, 716, 901
MboI GATC 4 cut(s) 162, 195, 714, 899
MboII GAAGA 6 cut(s) 137, 163, 238, 241, 895, 1097
MfeI CAATTG 1 cut(s) 816
MhlI GDGCHC 3 cut(s) 120, 231, 546
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 2 cut(s) 816, 848
MluNI TGGCCA 1 cut(s) 405
Mly113I GGCGCC 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 758
MscI TGGCCA 1 cut(s) 405
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 2 cut(s) 605, 1074
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 2 cut(s) 83, 201
MspI CCGG 2 cut(s) 660, 924
MspR9I CCNGG 4 cut(s) 237, 402, 708, 771
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 4 cut(s) 237, 402, 708, 771
MvnI CGCG 1 cut(s) 881
MwoI GCNNNNNNNGC 9 cut(s) 59, 68, 74, 77, 80, 83, 86, 476, 887
NarI GGCGCC 1 cut(s) 5
NdeI CATATG 1 cut(s) 1071
NdeII GATC 4 cut(s) 162, 195, 714, 899
NlaIII CATG 3 cut(s) 275, 641, 1061
NlaIV GGNNCC 7 cut(s) 6, 229, 230, 269, 531, 544, 545
NmuCI GTSAC 1 cut(s) 499
OliI CACNNNNGTG 1 cut(s) 605
PagI TCATGA 1 cut(s) 1057
PceI AGGCCT 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 2 cut(s) 663, 722
PflMI CCANNNNNTGG 1 cut(s) 707
PkrI GCNGC 9 cut(s) 70, 73, 76, 79, 82, 85, 88, 203, 784
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 263
PmlI CACGTG 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 529
PshAI GACNNNNGTC 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 4 cut(s) 235, 400, 706, 769
PspCI CACGTG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 4 cut(s) 235, 400, 706, 769
PspN4I GGNNCC 7 cut(s) 6, 229, 230, 269, 531, 544, 545
PspOMI GGGCCC 2 cut(s) 227, 542
PspPI GGNCC 9 cut(s) 227, 228, 268, 529, 542, 543, 632, 688, 1079
PspPPI RGGWCCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 176, 215, 590
RsaNI GTAC 3 cut(s) 175, 214, 589
RseI CAYNNNNRTG 2 cut(s) 605, 1074
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 9 cut(s) 69, 72, 75, 78, 81, 84, 87, 202, 783
Sau3AI GATC 4 cut(s) 162, 195, 714, 899
Sau96I GGNCC 9 cut(s) 227, 228, 268, 529, 542, 543, 632, 688, 1079
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 4 cut(s) 237, 402, 708, 771
SduI GDGCHC 3 cut(s) 120, 231, 546
SfaNI GCATC 1 cut(s) 544
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 5 cut(s) 268, 529, 632, 688, 1079
SmiMI CAYNNNNRTG 2 cut(s) 605, 1074
SmlI CTYRAG 2 cut(s) 584, 957
SmoI CTYRAG 2 cut(s) 584, 957
Sse9I AATT 2 cut(s) 816, 848
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 4 cut(s) 75, 78, 81, 201
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 605, 1116
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 4 cut(s) 235, 400, 706, 769
StyI CCWWGG 4 cut(s) 325, 486, 514, 678
TaaI ACNGT 2 cut(s) 160, 1034
TaiI ACGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 902, 912
TasI AATT 2 cut(s) 816, 848
TatI WGTACW 3 cut(s) 174, 213, 588
TauI GCSGC 4 cut(s) 77, 80, 83, 204
TfiI GAWTC 2 cut(s) 663, 722
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 4 cut(s) 165, 282, 448, 1039
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 5 cut(s) 68, 71, 83, 86, 782
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 1 cut(s) 1046
TspGWI ACGGA 1 cut(s) 912
TspRI CASTG 4 cut(s) 165, 282, 448, 1039
Van91I CCANNNNNTGG 1 cut(s) 707
VpaK11BI GGWCC 5 cut(s) 268, 529, 632, 688, 1079
XapI RAATTY 1 cut(s) 848
XcmI CCANNNNNNNNNTGG 1 cut(s) 708
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 2 cut(s) 605, 1116
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.