Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009954

Physical Location & Seq

Genomic Coordinates Reverse (-)

17457699 .. 17459691

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41835.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGGACTCCGGAATTTCCAGATCTGGGGAAACACTGCTCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAGGTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCGATAGAGAAGATGTGACTGTAGTTATCTGCCCACTCTGTGCTAAAGGAGTCCGATTAAACCCAAACGAAGACCCAAATATAACATGGGAGAAACATGTCAATACCGACTGTGACCCATCAAACTACGAAAAAGCTACAAAGAAGAAGAAATGTCCCGTTCCAAGATGCAAGGAGTACCTAACTTTCTCCAACACCATCAAGTGCCGAGATTGCAATGTCGATCACTGCTTGAAACATCGTTTTGGACCTGATCACACTTGCCCTGGACCAAGAAAACTCCCATTCATGGGTTTCTTGAGTAGTAGTACCACCAGAAAAGAAGCTAAGACAACAAGACCCAACAAAGCTCATCCATCAACTTCATCATCTTCTTCTTCTTCGAGATGGTCTAATCTCCTATCTTCAGCAGAAGCAGGAATTAGCAGGCTCGGTAATGACATTAGCCAGAAGCTACAGTTTTCGAGCAGCAAAGATAATGGTATCGTGGAGGTGTGTCCACAGTGCGGTGCGAAATTCTCTTCGGTTACTTCTCTTGTGGAACATGTAGAGAAAACACATGAGAGGAACAAGAAGCAGAATCATGGCAATGTCACGGTCGATGTCTGCCCTAGATGTAGCAGAGGATTCCGCGATCCAGTAGATCTTGTGAACCATATCGAAAGAGATCACCGAGGCACTTCGAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1 zf-C2H2 zf-C2H2_4 zf-Di19

Protein Analysis

279

Amino Acids

31.25

Weight (kDa)

8.87

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	13 - 49	8.8e-14	AN1-like Zinc finger
zf-C2H2_ZFAND2	PF25403	56 - 94	5.7e-19	ZFAND2A/B-like C2H2 zinc finger
zf-AN1	PF01428	101 - 140	5.9e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41835 AT3G57480 AT3G57480
fragaria_vesca	FvH4_6g23600
malus_domestica	MD12G1077300.v1.1 MD14G1070700.v1.1
prunus_persica	Prupe.7G063400_v2.0.a1 Prupe.7G063600_v2.0.a1
pyrus_communis	pycom12g06240 pycom14g06000
rosa_chinensis	RchiOBHm_Chr3g0481751
rosa_laevigata	RLG00000023381
rosa_multiflora	Rmu_ssc0000267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00399850 Rroxscaffold_6G00400210
rosa_rugosa	Rorug03G0193900
rosa_samantha	Rh3AG244600 Rh3BG280000 Rh3CG275000 Rh3DG271800
rosa_wichuraiana	Rw3G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
AccII	CGCG	1 cut(s)	780
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	2 cut(s)	654, 778
AclWI	GGATC	2 cut(s)	120, 776
AcsI	RAATTY	2 cut(s)	14, 662
AcuI	CTGAAG	1 cut(s)	537
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	2 cut(s)	326, 457
AfiI	CCNNNNNNNGG	4 cut(s)	26, 436, 437, 653
AflIII	ACRYGT	2 cut(s)	244, 691
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	5 cut(s)	123, 284, 473, 497, 601
AluI	AGCT	5 cut(s)	123, 284, 473, 497, 601
AlwI	GGATC	2 cut(s)	120, 776
Aor13HI	TCCGGA	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	615
ApoI	RAATTY	2 cut(s)	14, 662
AspS9I	GGNCC	2 cut(s)	395, 416
AsuHPI	GGTGA	2 cut(s)	70, 809
AsuII	TTCGAA	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	395, 416
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	4 cut(s)	274, 353, 511, 528
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	3 cut(s)	95, 168, 602
BfuAI	ACCTGC	1 cut(s)	89
BglII	AGATCT	2 cut(s)	22, 790
BisI	GCNGC	1 cut(s)	616
BlsI	GCNGC	1 cut(s)	617
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	2 cut(s)	395, 416
BmgT120I	GGNCC	2 cut(s)	395, 416
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	466
Bsa29I	ATCGAT	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	412, 820
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 436, 437, 653
Bse1I	ACTGG	1 cut(s)	785
Bse3DI	GCAATG	2 cut(s)	370, 742
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	414
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	412, 820
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	4 cut(s)	26, 436, 437, 653
BseMI	GCAATG	2 cut(s)	370, 742
BseNI	ACTGG	1 cut(s)	785
BseXI	GCAGC	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	780
Bsh1285I	CGRYCG	2 cut(s)	88, 747
BshVI	ATCGAT	1 cut(s)	63
BsiEI	CGRYCG	2 cut(s)	88, 747
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	19, 288
BslI	CCNNNNNNNGG	4 cut(s)	26, 436, 437, 653
BsmFI	GGGAC	2 cut(s)	19, 288
Bsp119I	TTCGAA	1 cut(s)	830
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
BspACI	CCGC	2 cut(s)	654, 778
BspDI	ATCGAT	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	780
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	120, 776
BspT104I	TTCGAA	1 cut(s)	830
BsrDI	GCAATG	2 cut(s)	370, 742
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	2 cut(s)	412, 820
BssMI	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	6 cut(s)	89, 169, 260, 606, 651, 745
Bst6I	CTCTTC	1 cut(s)	673
BstBI	TTCGAA	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	56, 575
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	780
BstKTI	GATC	7 cut(s)	25, 115, 373, 403, 784, 793, 817
BstMBI	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
BstMCI	CGRYCG	2 cut(s)	88, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 360
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	2 cut(s)	248, 695
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	3 cut(s)	95, 168, 602
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	22, 790
BstYI	RGATCY	2 cut(s)	22, 790
Bsu15I	ATCGAT	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	2 cut(s)	34, 373
BtsIMutI	CAGTG	3 cut(s)	34, 373, 656
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	56, 575
Cfr13I	GGNCC	2 cut(s)	395, 416
ClaI	ATCGAT	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	325, 456
CviAII	CATG	6 cut(s)	234, 245, 436, 692, 707, 731
CviJI	RGCY	7 cut(s)	123, 284, 473, 497, 577, 594, 601
CviKI_1	RGCY	7 cut(s)	123, 284, 473, 497, 577, 594, 601
CviQI	GTAC	2 cut(s)	325, 456
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	7 cut(s)	24, 114, 372, 402, 783, 792, 816
DpnII	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
DraIII	CACNNNGTG	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	395, 416
Eco57I	CTGAAG	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	412
FaeI	CATG	6 cut(s)	237, 248, 439, 695, 710, 734
FaqI	GGGAC	2 cut(s)	19, 288
FatI	CATG	6 cut(s)	233, 244, 435, 691, 706, 730
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	616
FokI	GGATG	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	616
FspBI	CTAG	1 cut(s)	759
GluI	GCNGC	1 cut(s)	616
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	6 cut(s)	237, 248, 439, 695, 710, 734
HinfI	GANTC	4 cut(s)	7, 198, 727, 774
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	70, 809
Hpy166II	GTNNAC	2 cut(s)	647, 799
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	4 cut(s)	11, 20, 445, 531
Hpy8I	GTNNAC	2 cut(s)	647, 799
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	6 cut(s)	89, 169, 260, 606, 651, 745
HpyCH4V	TGCA	3 cut(s)	54, 318, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 360
HpyF3I	CTNAG	1 cut(s)	474
Hsp92II	CATG	6 cut(s)	237, 248, 439, 695, 710, 734
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	627
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	759
MaeIII	GTNAC	4 cut(s)	163, 260, 673, 739
MalI	GATC	7 cut(s)	24, 114, 372, 402, 783, 792, 816
MboI	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
MflI	RGATCY	2 cut(s)	22, 790
MluCI	AATT	3 cut(s)	14, 567, 662
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	631, 705, 764, 815
MroI	TCCGGA	1 cut(s)	10
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	735
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	90, 360
NdeII	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
NlaIII	CATG	6 cut(s)	237, 248, 439, 695, 710, 734
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	3 cut(s)	163, 260, 739
NspI	RCATGY	2 cut(s)	248, 695
NspV	TTCGAA	1 cut(s)	830
PaqCI	CACCTGC	1 cut(s)	89
PciI	ACATGT	2 cut(s)	244, 691
PfeI	GAWTC	2 cut(s)	727, 774
PkrI	GCNGC	1 cut(s)	617
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	2 cut(s)	244, 691
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspPI	GGNCC	2 cut(s)	395, 416
PsuI	RGATCY	2 cut(s)	22, 790
RsaI	GTAC	2 cut(s)	326, 457
RsaNI	GTAC	2 cut(s)	325, 456
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	616
Sau3AI	GATC	7 cut(s)	22, 112, 370, 400, 781, 790, 814
Sau96I	GGNCC	2 cut(s)	395, 416
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	3 cut(s)	95, 168, 602
SfuI	TTCGAA	1 cut(s)	830
SinI	GGWCC	2 cut(s)	395, 416
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	3 cut(s)	14, 567, 662
SsiI	CCGC	2 cut(s)	654, 778
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	6 cut(s)	89, 169, 260, 606, 651, 745
TaqI	TCGA	9 cut(s)	45, 63, 118, 369, 530, 611, 747, 807, 830
TasI	AATT	3 cut(s)	14, 567, 662
TfiI	GAWTC	2 cut(s)	727, 774
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	3 cut(s)	41, 380, 656
TseFI	GTSAC	3 cut(s)	163, 260, 739
TseI	GCWGC	1 cut(s)	615
Tsp45I	GTSAC	3 cut(s)	163, 260, 739
TspDTI	ATGAA	3 cut(s)	143, 424, 501
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	41, 380, 656
VpaK11BI	GGWCC	2 cut(s)	395, 416
XapI	RAATTY	2 cut(s)	14, 662
XceI	RCATGY	2 cut(s)	248, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.