Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009954

Physical Location & Seq

Genomic Coordinates Reverse (-)

10213645 .. 10217523

Gene Structure 3879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGAACTCCGGAGTTTCCAGATCTGGGTCGGCATTGCTACATCGCCGATTGCCAGCAGATCGATTTCTTGCCCTTCACCTGCGATAGCTGTCATCAGGTATTTTGTTTGGAGCATCGAAGCTATATTAAGCATAATTGTCCAAAAGCTGACAAACAAAATGTCACTGTTGTCATCTGTCCCCTTTGTGCCAAAGGAGTTCATCTAATTCCAGATGAAGATGCAAACATTACTTGGGAGAGACATGTTAACACTGAATGCGACCCTTCTAATTATGAGAAAGCCACAAAGAAGAAAAAGTGTCCTGTTCCCGGCTGCAAGGAGCTCTTAACATTCTCCAACACAATCAAGTGCAGGGACTGCATGGTCAACCACTGTTTGAAGCATCGATTTGGACCTGATCACAAGTGTCCGGGACCCAAGAAACCTACAACAGGCTTCCCTTTTTCAGGCCTTTTAAGTAGGAGTAGGAAAGAAGTGTCAAAGCCCAACCATGCTCCTGCCGCATCTTCCTCGAACTGGAGTAATAGTTTTCTTACTGCAGCTTCATCTTTTCGAGCCTCAGCTGAAGCGAGTGTGGCAAAATTGAGTAGTGAACTTAGCCAGAAGTGGCAGATAGCAAAGGATGGAGTAGGGCAGAGCAGCAATAGTGGGAGTAGAAACGGGCAGCTGGAGGAGTGTCCGCAGTGTGGTGCTAAGTTTTCCTCAGTCACTGCTCTTGTAGACCACGTAGAAAAAGTCCATGAGAAGGGTGGCAACAGGGCTGGGGTGAAGAAAGCGACAATCGATGCCTGCCCTAAATGTAGTAAAGGGTTTCGTGATCCAGTAGCTCTCGTAGAGCACGTTGAGAGAGATCATGGTGGCACATCAAGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1 zf-C2H2 zf-C2H2_4

Protein Analysis

293

Amino Acids

31.98

Weight (kDa)

8.72

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41835 AT3G57480 AT3G57480
fragaria_vesca	FvH4_6g23600
malus_domestica	MD12G1077300.v1.1 MD14G1070700.v1.1
prunus_persica	Prupe.7G063400_v2.0.a1 Prupe.7G063600_v2.0.a1
pyrus_communis	pycom12g06240 pycom14g06000
rosa_chinensis	RchiOBHm_Chr3g0481751
rosa_laevigata	RLG00000023381
rosa_multiflora	Rmu_ssc0000267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00399850 Rroxscaffold_6G00400210
rosa_rugosa	Rorug03G0193900
rosa_samantha	Rh3AG244600 Rh3BG280000 Rh3CG275000 Rh3DG271800
rosa_wichuraiana	Rw3G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
AasI	GACNNNNNNGTC	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	723
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	2 cut(s)	504, 683
AclWI	GGATC	1 cut(s)	815
AcuI	CTGAAG	1 cut(s)	588
AfiI	CCNNNNNNNGG	7 cut(s)	26, 311, 434, 449, 519, 689, 748
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	382
AluBI	AGCT	8 cut(s)	90, 123, 149, 325, 545, 566, 670, 830
AluI	AGCT	8 cut(s)	90, 123, 149, 325, 545, 566, 670, 830
Alw21I	GWGCWC	2 cut(s)	327, 843
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	815
AlwNI	CAGNNNCTG	2 cut(s)	360, 713
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	4 cut(s)	315, 542, 642, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspS9I	GGNCC	2 cut(s)	395, 416
AsuC2I	CCSGG	2 cut(s)	312, 414
AsuHPI	GGTGA	2 cut(s)	70, 781
AvaII	GGWCC	2 cut(s)	395, 416
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	327, 843
BbvCI	CCTCAGC	1 cut(s)	562
BbvI	GCAGC	4 cut(s)	302, 554, 654, 679
BccI	CCATC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	312, 414
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	5 cut(s)	316, 504, 543, 643, 668
BlsI	GCNGC	5 cut(s)	317, 505, 544, 644, 669
Bme1390I	CCNGG	2 cut(s)	312, 414
Bme18I	GGWCC	2 cut(s)	395, 416
BmgT120I	GGNCC	2 cut(s)	395, 416
BmiI	GGNNCC	2 cut(s)	417, 418
BmrFI	CCNGG	2 cut(s)	312, 414
BmsI	GCATC	5 cut(s)	124, 211, 394, 515, 778
BpmI	CTGGAG	2 cut(s)	541, 692
Bpu10I	CCTNAGC	1 cut(s)	562
BpuMI	CCSGG	2 cut(s)	312, 414
Bsa29I	ATCGAT	3 cut(s)	63, 388, 786
BsaAI	YACGTR	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	7 cut(s)	26, 311, 434, 449, 519, 689, 748
Bse1I	ACTGG	2 cut(s)	524, 824
Bse3DI	GCAATG	1 cut(s)	34
BseAI	TCCGGA	1 cut(s)	10
BseCI	ATCGAT	3 cut(s)	63, 388, 786
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	7 cut(s)	26, 311, 434, 449, 519, 689, 748
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	576, 720
BseNI	ACTGG	2 cut(s)	524, 824
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	4 cut(s)	302, 554, 654, 679
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	453
BshVI	ATCGAT	3 cut(s)	63, 388, 786
BsiHKAI	GWGCWC	2 cut(s)	327, 843
BsiSI	CCGG	3 cut(s)	11, 312, 413
BslFI	GGGAC	3 cut(s)	165, 371, 429
BslI	CCNNNNNNNGG	7 cut(s)	26, 311, 434, 449, 519, 689, 748
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	165, 371, 429
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	327, 843
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	22, 60, 400, 820, 853
BspACI	CCGC	2 cut(s)	504, 683
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	2 cut(s)	575, 719
BspDI	ATCGAT	3 cut(s)	63, 388, 786
BspEI	TCCGGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	417, 418
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	524, 824
BssMI	GATC	5 cut(s)	22, 60, 400, 820, 853
Bst4CI	ACNGT	2 cut(s)	169, 377
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	56, 793
BstDEI	CTNAG	5 cut(s)	562, 599, 696, 706, 876
BstENI	CCTNNNNNAGG	2 cut(s)	432, 447
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	5 cut(s)	25, 63, 403, 823, 856
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	5 cut(s)	22, 60, 400, 820, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 503, 578
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	310, 412
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	4 cut(s)	302, 554, 654, 679
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	3 cut(s)	63, 388, 786
BsuRI	GGCC	1 cut(s)	453
BsuTUI	ATCGAT	3 cut(s)	63, 388, 786
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	2 cut(s)	692, 711
BtsIMutI	CAGTG	5 cut(s)	165, 252, 373, 692, 711
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	56, 793
CaiI	CAGNNNCTG	2 cut(s)	360, 713
Cfr13I	GGNCC	2 cut(s)	395, 416
ClaI	ATCGAT	3 cut(s)	63, 388, 786
CviAII	CATG	5 cut(s)	245, 364, 494, 743, 857
DdeI	CTNAG	5 cut(s)	562, 599, 696, 706, 876
DpnI	GATC	5 cut(s)	24, 62, 402, 822, 855
DpnII	GATC	5 cut(s)	22, 60, 400, 820, 853
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	395, 416
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	2 cut(s)	432, 447
EcoO109I	RGGNCCY	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	5 cut(s)	248, 367, 497, 746, 860
FaiI	YATR	8 cut(s)	126, 135, 246, 276, 365, 495, 744, 858
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	3 cut(s)	165, 371, 429
FatI	CATG	5 cut(s)	244, 363, 493, 742, 856
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	5 cut(s)	316, 504, 543, 643, 668
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	5 cut(s)	316, 504, 543, 643, 668
GluI	GCNGC	5 cut(s)	316, 504, 543, 643, 668
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	2 cut(s)	541, 692
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	3 cut(s)	11, 312, 413
Hin1II	CATG	5 cut(s)	248, 367, 497, 746, 860
HincII	GTYRAC	2 cut(s)	250, 370
HindII	GTYRAC	2 cut(s)	250, 370
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	11, 312, 413
HphI	GGTGA	2 cut(s)	70, 781
Hpy166II	GTNNAC	4 cut(s)	250, 370, 596, 724
Hpy188III	TCNNGA	4 cut(s)	11, 20, 212, 818
Hpy8I	GTNNAC	4 cut(s)	250, 370, 596, 724
HpyAV	CCTTC	3 cut(s)	85, 276, 742
HpyCH4III	ACNGT	2 cut(s)	169, 377
HpyCH4IV	ACGT	2 cut(s)	729, 843
HpyCH4V	TGCA	5 cut(s)	224, 318, 354, 363, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 503, 578
HpyF3I	CTNAG	5 cut(s)	562, 599, 696, 706, 876
HpySE526I	ACGT	2 cut(s)	729, 843
Hsp92II	CATG	5 cut(s)	248, 367, 497, 746, 860
KflI	GGGWCCC	1 cut(s)	416
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	22, 60, 400, 820, 853
LmnI	GCTCC	3 cut(s)	112, 322, 502
Lsp1109I	GCAGC	4 cut(s)	302, 554, 654, 679
LweI	GCATC	5 cut(s)	124, 211, 394, 515, 778
MaeII	ACGT	2 cut(s)	729, 843
MaeIII	GTNAC	2 cut(s)	163, 709
MalI	GATC	5 cut(s)	24, 62, 402, 822, 855
MboI	GATC	5 cut(s)	22, 60, 400, 820, 853
MboII	GAAGA	4 cut(s)	230, 304, 501, 784
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	327, 843
MluCI	AATT	4 cut(s)	136, 207, 271, 584
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	523, 571, 667, 715
MroI	TCCGGA	1 cut(s)	10
MseI	TTAA	4 cut(s)	129, 249, 329, 458
MspA1I	CMGCKG	2 cut(s)	566, 670
MspI	CCGG	3 cut(s)	11, 312, 413
MspR9I	CCNGG	2 cut(s)	312, 414
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	360, 503, 578
NciI	CCSGG	2 cut(s)	312, 414
NdeII	GATC	5 cut(s)	22, 60, 400, 820, 853
NlaIII	CATG	5 cut(s)	248, 367, 497, 746, 860
NlaIV	GGNNCC	2 cut(s)	417, 418
NmuCI	GTSAC	2 cut(s)	163, 709
NspI	RCATGY	1 cut(s)	248
PaqCI	CACCTGC	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	453
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PctI	GAATGC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	317, 505, 544, 644, 669
Ppu21I	YACGTR	1 cut(s)	730
PpuMI	RGGWCCY	1 cut(s)	416
PscI	ACATGT	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	764
PspN4I	GGNNCC	2 cut(s)	417, 418
PspPI	GGNCC	2 cut(s)	395, 416
PspPPI	RGGWCCY	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	544
PstNI	CAGNNNCTG	2 cut(s)	360, 713
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	2 cut(s)	566, 670
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	129, 249, 329, 458
SatI	GCNGC	5 cut(s)	316, 504, 543, 643, 668
Sau3AI	GATC	5 cut(s)	22, 60, 400, 820, 853
Sau96I	GGNCC	2 cut(s)	395, 416
ScrFI	CCNGG	2 cut(s)	312, 414
SduI	GDGCHC	2 cut(s)	327, 843
SfaNI	GCATC	5 cut(s)	124, 211, 394, 515, 778
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	2 cut(s)	395, 416
Sse9I	AATT	4 cut(s)	136, 207, 271, 584
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	2 cut(s)	504, 683
SstI	GAGCTC	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	310, 412
TaaI	ACNGT	2 cut(s)	169, 377
TaiI	ACGT	2 cut(s)	732, 846
TaqI	TCGA	6 cut(s)	63, 118, 388, 515, 556, 786
TasI	AATT	4 cut(s)	136, 207, 271, 584
TauI	GCSGC	1 cut(s)	506
Tru1I	TTAA	4 cut(s)	129, 249, 329, 458
Tru9I	TTAA	4 cut(s)	129, 249, 329, 458
TscAI	CASTG	5 cut(s)	172, 259, 380, 692, 718
TseFI	GTSAC	2 cut(s)	163, 709
TseI	GCWGC	4 cut(s)	315, 542, 642, 667
Tsp45I	GTSAC	2 cut(s)	163, 709
TspDTI	ATGAA	3 cut(s)	191, 231, 537
TspRI	CASTG	5 cut(s)	172, 259, 380, 692, 718
VpaK11BI	GGWCC	2 cut(s)	395, 416
XagI	CCTNNNNNAGG	2 cut(s)	432, 447
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.