Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009954

Physical Location & Seq

Genomic Coordinates Reverse (-)

9411860 .. 9413986

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1077300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGAACTCCGGAATTCCCAGATCTGGGTAGGCATTGCTACGTCGCCGAGTGCCAGCAGATCGATTTCTTGCCCTTCACCTGCGATAGCTGCCATCAGGTATTTTGTTTGGAGCATAGAAGCTACATTAAGCATAATTGTCCGAAAGGTGACCGAAAAAATGTCACTGTTGTCATCTGTCCCCTCTGTGCCAAAGGAGTTCATCTGATTCCCGATGAAGATCCAAACATTACTTGGGAGAGACATGTTAACACTGATTGCGACCCTTCTAATTATGAGAAAGCCACAAAGAAGAAAAAATGCCCTGTCCCTGGCTGCAAGGAGGTCTTAACATTCTCCAACACAATCAAGTGCAGGGATTGCACGGTAGATCACTGTTTGAAGCACCGATTTGGACTTGATCACAAGTGTCCTGGACCCAAGAAACCAGAAGCAGGATTTCCCTTTTTGGGTTATTTAAGTAGGAGTAGGAAAGAAGTGTCAAAACCGAATCATGCTCCTGCTGCATCCTCCCCGAATTGGAGTAGCTTTCTTACTGCAGCTTCATCTTTTCGAGCCTCAGCTGAAGCAAGTGTGGCAAAACTGAGTAGCGAACTTAGCCAAAAGTGGCAGATAGCAAAGGATGGAACTGGGCAGAGTAGCAGCAGCAGCGGGAGTAGAAACGGGCAGGGTGAGGTGTGTCCTCAGTGTGGTGCTAAGTTTTCCTCAGTCACCACTCTAGTAGACCACGTAGAAAAAGTTCATGAGAAGGGTGGCAACCGAGCTGCTGCGGTGAAGAAGGTGACAATTGATGCCTGCCCTAAATGTAGTAAGGGATTTCGTGATCCAGTGGCACTTGTAGAGCACGTTGAGAGAGATCACGGCGGTACTTCAAGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1 zf-C2H2 zf-C2H2_4

Protein Analysis

294

Amino Acids

32.04

Weight (kDa)

8.72

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	13 - 49	1.5e-13	AN1-like Zinc finger
zf-C2H2_ZFAND2	PF25403	56 - 94	6.3e-19	ZFAND2A/B-like C2H2 zinc finger
zf-AN1	PF01428	101 - 142	2.3e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41835 AT3G57480 AT3G57480
fragaria_vesca	FvH4_6g23600
malus_domestica	MD12G1077300.v1.1 MD14G1070700.v1.1
prunus_persica	Prupe.7G063400_v2.0.a1 Prupe.7G063600_v2.0.a1
pyrus_communis	pycom12g06240 pycom14g06000
rosa_chinensis	RchiOBHm_Chr3g0481751
rosa_laevigata	RLG00000023381
rosa_multiflora	Rmu_ssc0000267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00399850 Rroxscaffold_6G00400210
rosa_rugosa	Rorug03G0193900
rosa_samantha	Rh3AG244600 Rh3BG280000 Rh3CG275000 Rh3DG271800
rosa_wichuraiana	Rw3G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	723
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	3 cut(s)	651, 770, 864
AclWI	GGATC	2 cut(s)	215, 818
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	868
AfiI	CCNNNNNNNGG	7 cut(s)	25, 26, 311, 434, 449, 519, 689
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	382, 873
AjnI	CCWGG	2 cut(s)	310, 412
AluBI	AGCT	6 cut(s)	90, 123, 528, 542, 563, 764
AluI	AGCT	6 cut(s)	90, 123, 528, 542, 563, 764
Alw21I	GWGCWC	1 cut(s)	846
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	215, 818
Aor13HI	TCCGGA	1 cut(s)	10
ApeKI	GCWGC	9 cut(s)	90, 315, 503, 539, 642, 645, 648, 764, 767
ApoI	RAATTY	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	6 cut(s)	70, 161, 683, 703, 784, 793
AvaII	GGWCC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	846
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	9 cut(s)	77, 302, 490, 551, 654, 657, 660, 751, 754
BccI	CCATC	2 cut(s)	102, 617
BceAI	ACGGC	1 cut(s)	877
BciT130I	CCWGG	2 cut(s)	312, 414
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	9 cut(s)	91, 316, 504, 540, 643, 646, 649, 765, 768
BlsI	GCNGC	9 cut(s)	92, 317, 505, 541, 644, 647, 650, 766, 769
Bme1390I	CCNGG	2 cut(s)	312, 414
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	2 cut(s)	312, 414
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	515, 781
BmuI	ACTGGG	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	559
Bsa29I	ATCGAT	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	7 cut(s)	25, 26, 311, 434, 449, 519, 689
Bse1I	ACTGG	2 cut(s)	634, 827
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	2 cut(s)	312, 414
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	506, 628
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	7 cut(s)	25, 26, 311, 434, 449, 519, 689
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	573, 575, 698, 720
BseNI	ACTGG	2 cut(s)	634, 827
BseXI	GCAGC	9 cut(s)	77, 302, 490, 551, 654, 657, 660, 751, 754
BsgI	GTGCAG	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	846
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	165, 293
BslI	CCNNNNNNNGG	7 cut(s)	25, 26, 311, 434, 449, 519, 689
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	165, 293
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
BspACI	CCGC	3 cut(s)	651, 770, 864
BspCNI	CTCAG	4 cut(s)	572, 576, 697, 719
BspDI	ATCGAT	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	215, 818
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	634, 827
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
Bst2UI	CCWGG	2 cut(s)	312, 414
Bst4CI	ACNGT	3 cut(s)	169, 367, 377
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	56, 796
BstDEI	CTNAG	6 cut(s)	559, 584, 596, 684, 696, 706
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	506, 628
BstKTI	GATC	7 cut(s)	25, 63, 223, 373, 403, 826, 859
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 360, 503, 575, 597, 648
BstNI	CCWGG	2 cut(s)	312, 414
BstNSI	RCATGY	1 cut(s)	248
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	310, 412
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	9 cut(s)	77, 302, 490, 551, 654, 657, 660, 751, 754
BstX2I	RGATCY	2 cut(s)	22, 220
BstYI	RGATCY	2 cut(s)	22, 220
Bsu15I	ATCGAT	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	506, 628
BtsIMutI	CAGTG	5 cut(s)	165, 252, 373, 692, 834
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	56, 796
CciI	TCATGA	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	416
ClaI	ATCGAT	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	867
CviAII	CATG	3 cut(s)	245, 494, 743
CviQI	GTAC	1 cut(s)	867
DdeI	CTNAG	6 cut(s)	559, 584, 596, 684, 696, 706
DpnI	GATC	7 cut(s)	24, 62, 222, 372, 402, 825, 858
DpnII	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	585
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	310, 412
FaeI	CATG	3 cut(s)	248, 497, 746
FaiI	YATR	7 cut(s)	117, 135, 246, 276, 495, 744, 880
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	165, 293
FatI	CATG	3 cut(s)	244, 493, 742
FauI	CCCGC	1 cut(s)	644
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	9 cut(s)	91, 316, 504, 540, 643, 646, 649, 765, 768
FokI	GGATG	2 cut(s)	493, 635
Fsp4HI	GCNGC	9 cut(s)	91, 316, 504, 540, 643, 646, 649, 765, 768
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	9 cut(s)	91, 316, 504, 540, 643, 646, 649, 765, 768
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	3 cut(s)	248, 497, 746
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	208, 490
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	6 cut(s)	70, 161, 683, 703, 784, 793
Hpy166II	GTNNAC	2 cut(s)	250, 724
Hpy188I	TCNGA	2 cut(s)	144, 207
Hpy188III	TCNNGA	5 cut(s)	11, 212, 743, 821, 873
Hpy8I	GTNNAC	2 cut(s)	250, 724
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	4 cut(s)	85, 276, 742, 772
HpyCH4III	ACNGT	3 cut(s)	169, 367, 377
HpyCH4IV	ACGT	3 cut(s)	42, 729, 846
HpyCH4V	TGCA	5 cut(s)	318, 354, 363, 506, 539
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 360, 503, 575, 597, 648
HpyF3I	CTNAG	6 cut(s)	559, 584, 596, 684, 696, 706
HpySE526I	ACGT	3 cut(s)	42, 729, 846
Hsp92II	CATG	3 cut(s)	248, 497, 746
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
LmnI	GCTCC	2 cut(s)	112, 502
Lsp1109I	GCAGC	9 cut(s)	77, 302, 490, 551, 654, 657, 660, 751, 754
LweI	GCATC	2 cut(s)	515, 781
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	3 cut(s)	42, 729, 846
MaeIII	GTNAC	4 cut(s)	149, 163, 709, 781
MalI	GATC	7 cut(s)	24, 62, 222, 372, 402, 825, 858
MboI	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
MboII	GAAGA	3 cut(s)	230, 304, 787
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	2 cut(s)	22, 220
MhlI	GDGCHC	1 cut(s)	846
MluCI	AATT	5 cut(s)	14, 136, 271, 517, 786
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	7 cut(s)	194, 316, 520, 568, 667, 693, 715
MroI	TCCGGA	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	4 cut(s)	129, 249, 329, 458
MspA1I	CMGCKG	2 cut(s)	563, 651
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	312, 414
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	2 cut(s)	312, 414
MwoI	GCNNNNNNNGC	6 cut(s)	90, 360, 503, 575, 597, 648
NdeII	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
NlaIII	CATG	3 cut(s)	248, 497, 746
NlaIV	GGNNCC	1 cut(s)	418
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	4 cut(s)	149, 163, 709, 781
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	1 cut(s)	742
PaqCI	CACCTGC	1 cut(s)	89
PciI	ACATGT	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	208, 490
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	9 cut(s)	92, 317, 505, 541, 644, 647, 650, 766, 769
Ppu21I	YACGTR	1 cut(s)	730
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	310, 412
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	310, 412
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	416
PsrI	GAACNNNNNNTAC	2 cut(s)	723, 755
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	22, 220
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	868
RsaNI	GTAC	1 cut(s)	867
SaqAI	TTAA	4 cut(s)	129, 249, 329, 458
SatI	GCNGC	9 cut(s)	91, 316, 504, 540, 643, 646, 649, 765, 768
Sau3AI	GATC	7 cut(s)	22, 60, 220, 370, 400, 823, 856
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	312, 414
SduI	GDGCHC	1 cut(s)	846
SfaNI	GCATC	2 cut(s)	515, 781
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	5 cut(s)	14, 136, 271, 517, 786
SsiI	CCGC	3 cut(s)	651, 770, 864
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	2 cut(s)	310, 412
TaaI	ACNGT	3 cut(s)	169, 367, 377
TaiI	ACGT	3 cut(s)	45, 732, 849
TaqI	TCGA	2 cut(s)	63, 553
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	14, 136, 271, 517, 786
TfiI	GAWTC	2 cut(s)	208, 490
Tru1I	TTAA	4 cut(s)	129, 249, 329, 458
Tru9I	TTAA	4 cut(s)	129, 249, 329, 458
TscAI	CASTG	5 cut(s)	172, 259, 380, 692, 834
TseFI	GTSAC	4 cut(s)	149, 163, 709, 781
TseI	GCWGC	9 cut(s)	90, 315, 503, 539, 642, 645, 648, 764, 767
Tsp45I	GTSAC	4 cut(s)	149, 163, 709, 781
TspDTI	ATGAA	4 cut(s)	191, 231, 534, 731
TspRI	CASTG	5 cut(s)	172, 259, 380, 692, 834
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.