Rroxscaffold_6G00400210

Zinc finger AN1 and C2H2 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009954
Physical Location & Seq
Reverse (-)
22306783 .. 22309693
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400210.1

Sequence Viewer

Length: 510 bp
ATGGCAGACCACTGTTTGAAGCACCGATTTGGACCTGATCATAAGTGTCCTGGACCTAAGAAACCAGAGGCAGGTTTATCCTTTATGGGTCTTTTAAGTAGAAGTCGAAAAGAAACATCAAATCGCAACCATGCTCCTGCCACATCTTCCCCCAATTGGGGTAGCTTTCTTAGTGCAGCTTCATCTTTCAAAGCCTCAGCTGAAGCTAGTGTTGCAAAATTGAGTAATGAACTTAGCCAAAAGTGGACGACAAAAGATGGAGTGGGACAGAGCAGCAGCGGTGGGAGTAGAAACGGGCAAGTGGAGGAGTGTCCGCAATGTGGTGCTAAGTTCTCCTCAGTCACCACTCTTGTAGATCATGTACAAAAAGTTCATGAAAAGGGTGGCACCCGAGCAGGGGTGAAGAAGTTGACAGTAGATGTCTGCCCCAAGTGTAGTAAAGGATTTCGGGATCCAGTGGCTCTTGTAGAGCATGTTGAGAGGGATCATGGTGGTACTTCAAGAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1 zf-C2H2 zf-C2H2_4

Protein Analysis

169

Amino Acids

18.0

Weight (kDa)

9.45

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 386
AciI CCGC 2 cut(s) 279, 314
AclWI GGATC 3 cut(s) 446, 459, 492
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 2 cut(s) 363, 496
AfiI CCNNNNNNNGG 7 cut(s) 71, 156, 157, 158, 320, 396, 397
AgsI TTSAA 3 cut(s) 19, 190, 501
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 165, 179, 200, 206
AluI AGCT 4 cut(s) 165, 179, 200, 206
AlwI GGATC 3 cut(s) 446, 459, 492
Ama87I CYCGRG 1 cut(s) 390
ApeKI GCWGC 3 cut(s) 176, 273, 276
AspS9I GGNCC 2 cut(s) 32, 53
AsuHPI GGTGA 2 cut(s) 334, 412
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 2 cut(s) 32, 53
BamHI GGATCC 1 cut(s) 451
BanI GGYRCC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 196
BbvI GCAGC 3 cut(s) 188, 285, 288
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 37
BfaI CTAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 177, 274, 277
BlsI GCNGC 3 cut(s) 178, 275, 278
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 32, 53
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 32, 53
BmiI GGNNCC 2 cut(s) 388, 453
BmrFI CCNGG 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 196
Bsc4I CCNNNNNNNGG 7 cut(s) 71, 156, 157, 158, 320, 396, 397
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 51
BseLI CCNNNNNNNGG 7 cut(s) 71, 156, 157, 158, 320, 396, 397
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 210, 351
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 320, 325
BseXI GCAGC 3 cut(s) 188, 285, 288
BsgI GTGCAG 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 390
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 7 cut(s) 71, 156, 157, 158, 320, 396, 397
BsmFI GGGAC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 4 cut(s) 37, 355, 451, 484
BspACI CCGC 2 cut(s) 279, 314
BspCNI CTCAG 2 cut(s) 209, 350
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 388, 453
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 3 cut(s) 446, 459, 492
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 1 cut(s) 455
BssMI GATC 4 cut(s) 37, 355, 451, 484
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 14, 415
BstAUI TGTACA 1 cut(s) 361
BstDEI CTNAG 6 cut(s) 57, 170, 196, 233, 327, 337
BstKTI GATC 4 cut(s) 40, 358, 454, 487
BstMBI GATC 4 cut(s) 37, 355, 451, 484
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 3 cut(s) 188, 285, 288
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 10, 462
BveI ACCTGC 1 cut(s) 62
CciI TCATGA 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 32, 53
Csp6I GTAC 2 cut(s) 362, 495
CviAII CATG 5 cut(s) 131, 359, 374, 473, 488
CviJI RGCY 7 cut(s) 165, 179, 194, 200, 206, 237, 461
CviKI_1 RGCY 7 cut(s) 165, 179, 194, 200, 206, 237, 461
CviQI GTAC 2 cut(s) 362, 495
DdeI CTNAG 6 cut(s) 57, 170, 196, 233, 327, 337
DpnI GATC 4 cut(s) 39, 357, 453, 486
DpnII GATC 4 cut(s) 37, 355, 451, 484
Eco47I GGWCC 2 cut(s) 32, 53
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 5 cut(s) 134, 362, 377, 476, 491
FaiI YATR 8 cut(s) 42, 86, 132, 360, 375, 474, 489, 508
FaqI GGGAC 1 cut(s) 279
FatI CATG 5 cut(s) 130, 358, 373, 472, 487
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 177, 274, 277
Fsp4HI GCNGC 3 cut(s) 177, 274, 277
FspBI CTAG 1 cut(s) 207
GluI GCNGC 3 cut(s) 177, 274, 277
Hin1II CATG 5 cut(s) 134, 362, 377, 476, 491
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HphI GGTGA 2 cut(s) 334, 412
Hpy166II GTNNAC 2 cut(s) 246, 411
Hpy188III TCNNGA 3 cut(s) 374, 449, 501
Hpy8I GTNNAC 2 cut(s) 246, 411
HpyCH4III ACNGT 2 cut(s) 14, 415
HpyCH4V TGCA 2 cut(s) 176, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 6 cut(s) 57, 170, 196, 233, 327, 337
Hsp92II CATG 5 cut(s) 134, 362, 377, 476, 491
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 4 cut(s) 37, 355, 451, 484
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 8 cut(s) 36, 48, 57, 63, 78, 150, 381, 468
Lsp1109I GCAGC 3 cut(s) 188, 285, 288
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 340
MalI GATC 4 cut(s) 39, 357, 453, 486
MboI GATC 4 cut(s) 37, 355, 451, 484
MboII GAAGA 2 cut(s) 138, 415
MfeI CAATTG 1 cut(s) 154
MflI RGATCY 1 cut(s) 451
MluCI AATT 2 cut(s) 154, 218
MnlI CCTC 5 cut(s) 61, 205, 298, 346, 474
MseI TTAA 1 cut(s) 95
MspA1I CMGCKG 2 cut(s) 200, 279
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 4 cut(s) 37, 355, 451, 484
NlaIII CATG 5 cut(s) 134, 362, 377, 476, 491
NlaIV GGNNCC 2 cut(s) 388, 453
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 476
PagI TCATGA 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 49
PkrI GCNGC 3 cut(s) 178, 275, 278
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 388, 453
PspPI GGNCC 2 cut(s) 32, 53
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 363, 496
RsaNI GTAC 2 cut(s) 362, 495
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 3 cut(s) 177, 274, 277
Sau3AI GATC 4 cut(s) 37, 355, 451, 484
Sau96I GGNCC 2 cut(s) 32, 53
ScrFI CCNGG 1 cut(s) 51
SetI ASST 7 cut(s) 37, 58, 76, 167, 181, 202, 208
SinI GGWCC 2 cut(s) 32, 53
Sse9I AATT 2 cut(s) 154, 218
SsiI CCGC 2 cut(s) 279, 314
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 14, 415
TaqI TCGA 1 cut(s) 106
TasI AATT 2 cut(s) 154, 218
TatI WGTACW 1 cut(s) 361
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 2 cut(s) 17, 462
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 176, 273, 276
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 4 cut(s) 171, 243, 362, 390
TspRI CASTG 2 cut(s) 17, 462
VpaK11BI GGWCC 2 cut(s) 32, 53
XceI RCATGY 1 cut(s) 476
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.