Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009954

Physical Location & Seq

Genomic Coordinates Forward (+)

17685313 .. 17688329

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGAACTCCGGAATTCCCCGATCTGGGAAAGCATTGCTCCGTCGTCGAATGCCAGCAGATCGACTTCTTGCCATTCACCTGCGATAGCTGCTATAAGGTGTTTTGTTTGGAGCACCGAAGCTACATTAAACACAACTGTCCAAAAGGCGACAGACAAAATGTCACTGTTGTCATCTGCCCCCTCTGTGCCAAAGGAGTTCATCTAATTCCAGATGAAGATGCCAATATTACTTGGGAGAGGCATGTTAACACTGATTGCGACCCTTCAAATTATGAGAAAGCCACGAAGAAGAAAAAATGTCCTGTTCCTGGGTGCAGGGAGGTCTTAACATTTTCGAACACAATCAAGTGCAGGGACTGCATGGCAGACCACTGTTTGAAGCACCGATTTGGACCTGATCATAAGTGTCCTGGACCTAAGAAAGTGGAGGCAGGTTTTCCTTTTATGGGTCTATTAAATAGAAGTAGAACAGAAACACCAAAGCGCAACCATGCTCCTGCCACATCTTCCCCCAATTGGGGTAGTAGCTTTCTTAGTGCAGCTTCATCTTTCAAAGCCTCAGCTTCAGCCGGTGTTGCAAAATTGACTAATGAACTTGGCCAAAAGTGGCAGACAACAAAAGATGGAGTGGGGCAGAGCAGCAGCGAGGGTAGTAGAAGCGGGCAAGTGGAGGAGTGTCCGCAATGTGGTGCTAAGTTCTCCTCGGTCACCACTCTTATAGATCATGTACAAAAAGTTCATGAAAAAGGTGGCGTCCGAGCAGGGGTGAAGAAGTTGACAGTCGATGCCTGCCCAAAGTGTAGTAAAGGATTTCGTGATCCAGTGGCTCTTGTGGAGCATGTTGAGAAGGAGCATGGTGGTACTTCACGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1 zf-C2H2 zf-C2H2_4

Protein Analysis

293

Amino Acids

31.92

Weight (kDa)

8.72

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	13 - 49	1.1e-13	AN1-like Zinc finger
zf-C2H2_ZFAND2	PF25403	56 - 94	6.5e-18	ZFAND2A/B-like C2H2 zinc finger
zf-AN1	PF01428	101 - 142	1.5e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41835 AT3G57480 AT3G57480
fragaria_vesca	FvH4_6g23600
malus_domestica	MD12G1077300.v1.1 MD14G1070700.v1.1
prunus_persica	Prupe.7G063400_v2.0.a1 Prupe.7G063600_v2.0.a1
pyrus_communis	pycom12g06240 pycom14g06000
rosa_chinensis	RchiOBHm_Chr3g0481751
rosa_laevigata	RLG00000023381
rosa_multiflora	Rmu_ssc0000267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00399850 Rroxscaffold_6G00400210
rosa_rugosa	Rorug03G0193900
rosa_samantha	Rh3AG244600 Rh3BG280000 Rh3CG275000 Rh3DG271800
rosa_wichuraiana	Rw3G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	2 cut(s)	89, 425
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	2 cut(s)	663, 683
AclWI	GGATC	1 cut(s)	815
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	756
AfaI	GTAC	2 cut(s)	732, 865
AfiI	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 449, 519, 520, 521, 689, 766
AgsI	TTSAA	3 cut(s)	270, 382, 556
AhdI	GACNNNNNGTC	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	310, 412
AluBI	AGCT	5 cut(s)	90, 123, 531, 545, 566
AluI	AGCT	5 cut(s)	90, 123, 531, 545, 566
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	815
AlwNI	CAGNNNCTG	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	4 cut(s)	90, 542, 642, 645
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	395, 416
AsuHPI	GGTGA	3 cut(s)	70, 703, 781
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	395, 416
BalI	TGGCCA	1 cut(s)	603
BauI	CACGAG	1 cut(s)	870
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	562
BbvI	GCAGC	4 cut(s)	77, 554, 654, 657
BccI	CCATC	1 cut(s)	620
BciT130I	CCWGG	2 cut(s)	312, 414
BclI	TGATCA	1 cut(s)	400
BfuAI	ACCTGC	2 cut(s)	89, 425
BisI	GCNGC	4 cut(s)	91, 543, 643, 646
BlsI	GCNGC	4 cut(s)	92, 544, 644, 647
Bme1390I	CCNGG	2 cut(s)	312, 414
Bme18I	GGWCC	2 cut(s)	395, 416
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	395, 416
BmrFI	CCNGG	2 cut(s)	312, 414
BmsI	GCATC	2 cut(s)	211, 778
Bpu10I	CCTNAGC	1 cut(s)	562
Bpu14I	TTCGAA	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	756
BsaJI	CCNNGG	2 cut(s)	311, 705
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 449, 519, 520, 521, 689, 766
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	2 cut(s)	34, 692
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	2 cut(s)	312, 414
BseDI	CCNNGG	2 cut(s)	311, 705
BseLI	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 449, 519, 520, 521, 689, 766
BseMI	GCAATG	2 cut(s)	34, 692
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	2 cut(s)	689, 694
BseXI	GCAGC	4 cut(s)	77, 554, 654, 657
BsgI	GTGCAG	3 cut(s)	337, 373, 561
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	11, 573
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 449, 519, 520, 521, 689, 766
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	5 cut(s)	22, 60, 400, 724, 820
BspACI	CCGC	2 cut(s)	663, 683
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	1 cut(s)	575
BspEI	TCCGGA	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	742
BspMI	ACCTGC	2 cut(s)	89, 425
BspPI	GGATC	1 cut(s)	815
BspT104I	TTCGAA	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	34, 692
BsrFI	RCCGGY	1 cut(s)	572
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	824
BssAI	RCCGGY	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	311, 705
BssMI	GATC	5 cut(s)	22, 60, 400, 724, 820
BssNI	GRCGYC	1 cut(s)	756
BssSI	CACGAG	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	870
Bst2UI	CCWGG	2 cut(s)	312, 414
Bst4CI	ACNGT	4 cut(s)	140, 169, 377, 784
BstACI	GRCGYC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	730
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	56, 665, 793
BstDEI	CTNAG	4 cut(s)	420, 536, 562, 696
BstEII	GGTNACC	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	5 cut(s)	25, 63, 403, 727, 823
BstMBI	GATC	5 cut(s)	22, 60, 400, 724, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 360, 578
BstNI	CCWGG	2 cut(s)	312, 414
BstNSI	RCATGY	2 cut(s)	248, 845
BstPI	GGTNACC	1 cut(s)	709
BstSCI	CCNGG	2 cut(s)	310, 412
BstV1I	GCAGC	4 cut(s)	77, 554, 654, 657
BsuRI	GGCC	1 cut(s)	603
BtsIMutI	CAGTG	4 cut(s)	165, 252, 373, 831
BveI	ACCTGC	2 cut(s)	89, 425
Cac8I	GCNNGC	3 cut(s)	56, 665, 793
CaiI	CAGNNNCTG	1 cut(s)	360
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	2 cut(s)	395, 416
CseI	GACGC	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	731, 864
CviAII	CATG	7 cut(s)	245, 364, 494, 728, 743, 842, 857
CviQI	GTAC	2 cut(s)	731, 864
DdeI	CTNAG	4 cut(s)	420, 536, 562, 696
DpnI	GATC	5 cut(s)	24, 62, 402, 726, 822
DpnII	GATC	5 cut(s)	22, 60, 400, 724, 820
DriI	GACNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	601
Eam1105I	GACNNNNNGTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	395, 416
Eco57I	CTGAAG	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	709
EcoO65I	GGTNACC	1 cut(s)	709
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	310, 412
FaeI	CATG	7 cut(s)	248, 367, 497, 731, 746, 845, 860
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	7 cut(s)	244, 363, 493, 727, 742, 841, 856
FauI	CCCGC	1 cut(s)	656
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	91, 543, 643, 646
Fsp4HI	GCNGC	4 cut(s)	91, 543, 643, 646
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	4 cut(s)	91, 543, 643, 646
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	2 cut(s)	11, 573
HgaI	GACGC	1 cut(s)	745
HhaI	GCGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	7 cut(s)	248, 367, 497, 731, 746, 845, 860
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	2 cut(s)	250, 780
HindII	GTYRAC	2 cut(s)	250, 780
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	11, 573
HphI	GGTGA	3 cut(s)	70, 703, 781
Hpy166II	GTNNAC	2 cut(s)	250, 780
Hpy188I	TCNGA	1 cut(s)	761
Hpy188III	TCNNGA	5 cut(s)	11, 212, 743, 818, 870
Hpy8I	GTNNAC	2 cut(s)	250, 780
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	2 cut(s)	276, 844
HpyCH4III	ACNGT	4 cut(s)	140, 169, 377, 784
HpyCH4V	TGCA	5 cut(s)	318, 354, 363, 542, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 360, 578
HpyF3I	CTNAG	4 cut(s)	420, 536, 562, 696
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	7 cut(s)	248, 367, 497, 731, 746, 845, 860
HspAI	GCGC	1 cut(s)	487
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	22, 60, 400, 724, 820
LmnI	GCTCC	5 cut(s)	44, 112, 502, 838, 853
Lsp1109I	GCAGC	4 cut(s)	77, 554, 654, 657
LweI	GCATC	2 cut(s)	211, 778
MaeIII	GTNAC	2 cut(s)	163, 709
MalI	GATC	5 cut(s)	24, 62, 402, 726, 822
MboI	GATC	5 cut(s)	22, 60, 400, 724, 820
MboII	GAAGA	5 cut(s)	230, 301, 304, 501, 784
MfeI	CAATTG	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	5 cut(s)	14, 207, 271, 517, 584
MluNI	TGGCCA	1 cut(s)	603
MnlI	CCTC	8 cut(s)	194, 234, 316, 424, 571, 643, 667, 715
Mox20I	TGGCCA	1 cut(s)	603
MroI	TCCGGA	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	4 cut(s)	129, 249, 329, 458
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	2 cut(s)	11, 573
MspR9I	CCNGG	2 cut(s)	312, 414
MunI	CAATTG	1 cut(s)	517
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	312, 414
MwoI	GCNNNNNNNGC	3 cut(s)	90, 360, 578
NdeII	GATC	5 cut(s)	22, 60, 400, 724, 820
NlaIII	CATG	7 cut(s)	248, 367, 497, 731, 746, 845, 860
NmuCI	GTSAC	2 cut(s)	163, 709
NspI	RCATGY	2 cut(s)	248, 845
NspV	TTCGAA	1 cut(s)	338
PagI	TCATGA	1 cut(s)	742
PaqCI	CACCTGC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	92, 544, 644, 647
Psp6I	CCWGG	2 cut(s)	310, 412
PspEI	GGTNACC	1 cut(s)	709
PspGI	CCWGG	2 cut(s)	310, 412
PspPI	GGNCC	2 cut(s)	395, 416
PsrI	GAACNNNNNNTAC	2 cut(s)	723, 755
PstNI	CAGNNNCTG	1 cut(s)	360
RsaI	GTAC	2 cut(s)	732, 865
RsaNI	GTAC	2 cut(s)	731, 864
SaqAI	TTAA	4 cut(s)	129, 249, 329, 458
SatI	GCNGC	4 cut(s)	91, 543, 643, 646
Sau3AI	GATC	5 cut(s)	22, 60, 400, 724, 820
Sau96I	GGNCC	2 cut(s)	395, 416
ScrFI	CCNGG	2 cut(s)	312, 414
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	211, 778
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	2 cut(s)	395, 416
Sse9I	AATT	5 cut(s)	14, 207, 271, 517, 584
SsiI	CCGC	2 cut(s)	663, 683
SspI	AATATT	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	310, 412
TaaI	ACNGT	4 cut(s)	140, 169, 377, 784
TaqI	TCGA	4 cut(s)	48, 63, 338, 786
TaqII	GACCGA	1 cut(s)	697
TasI	AATT	5 cut(s)	14, 207, 271, 517, 584
TatI	WGTACW	1 cut(s)	730
Tru1I	TTAA	4 cut(s)	129, 249, 329, 458
Tru9I	TTAA	4 cut(s)	129, 249, 329, 458
TscAI	CASTG	4 cut(s)	172, 259, 380, 831
TseFI	GTSAC	2 cut(s)	163, 709
TseI	GCWGC	4 cut(s)	90, 542, 642, 645
Tsp45I	GTSAC	2 cut(s)	163, 709
TspDTI	ATGAA	6 cut(s)	191, 231, 537, 609, 731, 759
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	4 cut(s)	172, 259, 380, 831
VpaK11BI	GGWCC	2 cut(s)	395, 416
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	2 cut(s)	248, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.