Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009954

Physical Location & Seq

Genomic Coordinates Reverse (-)

10237834 .. 10239978

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G063600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAAACTCCGGAGTTTCCAGATCTGGGTCGGCATTGCTACTTATTTAGAAGAAAAACAGATGATTTGATAATAGCAGTGACGGCTGTTTTAATAGCCTTACAAAAAATCGATTTCTTGCCCTTCACTTGCAATAGCTGCCATCAGGTATTTTGTTTGGAGCATCGAAGCTATATTAAGCATAATTGTCCAAAAGCTAACAAACAAAATGTCACTGTTGTCGTCTGTCCCCTCTGTGCCAAAGGAGTTCATCTAATTCCAGATGAAGATGCAAACATTACTTGGGAGAGACATGTTAACACTGAATGCGACCCTTCTAATTATGAGAAAGCCACAAAGAAGAAAAAGTGTCCTGTCCCTGGCTGCAAGGAGCTCTTAACATTCTCCAACATAATCAAGTGCAGGGACTGCACTGTCAACCACTGTTTGAAGCATCAATTTGGACCTGATCACAAGTGTCCGGGACCCAAAAAACCAACAACAAGCTTTCCTTTTTCGGGCCTTTTAAGTGGGACTTCATCTTTTCGAGCCTCAGCTGAAGCGAGTGTGGCAAAATTGAGTAGCGAACTTAGCCAGAAGTGGCAAATTGCAAAGGATGGAGCAGGGCAGAGTAGCAGCAGTGGGAGTAGAAACGGGCAACTGGAGGAGTGTCCGCAGTGTGGTGCTAAGTTTTCCTTCGTCACCACTCTTGTAGACCACGTAGAAAAAGTCCATGAGAAGGGTGGCGACAGAGCTGAGGTGAAGAAAGCGACAATCGATGCCTGCCCTAAATGTAGTAAAGGGTTTCGTGATCCAGCAGCTCTCGTAGAGCACGTTGAGAGAGATCATGGTGGTATATCAAGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1 zf-C2H2 zf-C2H2_4

Protein Analysis

283

Amino Acids

31.11

Weight (kDa)

8.58

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41835 AT3G57480 AT3G57480
fragaria_vesca	FvH4_6g23600
malus_domestica	MD12G1077300.v1.1 MD14G1070700.v1.1
prunus_persica	Prupe.7G063400_v2.0.a1 Prupe.7G063600_v2.0.a1
pyrus_communis	pycom12g06240 pycom14g06000
rosa_chinensis	RchiOBHm_Chr3g0481751
rosa_laevigata	RLG00000023381
rosa_multiflora	Rmu_ssc0000267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00399850 Rroxscaffold_6G00400210
rosa_rugosa	Rorug03G0193900
rosa_samantha	Rh3AG244600 Rh3BG280000 Rh3CG275000 Rh3DG271800
rosa_wichuraiana	Rw3G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	693
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	785
AcuI	CTGAAG	1 cut(s)	558
AfiI	CCNNNNNNNGG	5 cut(s)	26, 359, 497, 659, 718
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	8 cut(s)	138, 171, 197, 373, 486, 536, 734, 800
AluI	AGCT	8 cut(s)	138, 171, 197, 373, 486, 536, 734, 800
Alw21I	GWGCWC	2 cut(s)	375, 813
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	785
AlwNI	CAGNNNCTG	1 cut(s)	408
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	4 cut(s)	138, 363, 615, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspS9I	GGNCC	3 cut(s)	443, 464, 499
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	673, 751
AvaII	GGWCC	2 cut(s)	443, 464
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	375, 813
BbvCI	CCTCAGC	2 cut(s)	532, 735
BbvI	GCAGC	4 cut(s)	125, 350, 627, 809
BccI	CCATC	2 cut(s)	150, 590
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	4 cut(s)	139, 364, 616, 798
BlsI	GCNGC	4 cut(s)	140, 365, 617, 799
Bme1390I	CCNGG	2 cut(s)	360, 462
Bme18I	GGWCC	2 cut(s)	443, 464
BmgT120I	GGNCC	3 cut(s)	443, 464, 499
BmiI	GGNNCC	2 cut(s)	465, 466
BmrFI	CCNGG	2 cut(s)	360, 462
BmsI	GCATC	4 cut(s)	172, 259, 442, 748
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	2 cut(s)	532, 735
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	2 cut(s)	111, 756
BsaAI	YACGTR	1 cut(s)	700
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 359, 497, 659, 718
Bse1I	ACTGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	34
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	360
BseCI	ATCGAT	2 cut(s)	111, 756
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	5 cut(s)	26, 359, 497, 659, 718
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	546, 726
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	4 cut(s)	125, 350, 627, 809
BsgI	GTGCAG	2 cut(s)	394, 421
BshFI	GGCC	1 cut(s)	501
BshVI	ATCGAT	2 cut(s)	111, 756
BsiHKAI	GWGCWC	2 cut(s)	375, 813
BsiSI	CCGG	2 cut(s)	11, 461
BslFI	GGGAC	5 cut(s)	213, 341, 419, 477, 526
BslI	CCNNNNNNNGG	5 cut(s)	26, 359, 497, 659, 718
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	5 cut(s)	213, 341, 419, 477, 526
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	375, 813
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	22, 448, 790, 823
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	2 cut(s)	545, 727
BspDI	ATCGAT	2 cut(s)	111, 756
BspEI	TCCGGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	465, 466
BspPI	GGATC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	4 cut(s)	22, 448, 790, 823
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	217, 415, 425
BstAPI	GCANNNNNTGC	2 cut(s)	138, 408
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	4 cut(s)	532, 569, 666, 735
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	4 cut(s)	25, 451, 793, 826
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	4 cut(s)	22, 448, 790, 823
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 138, 408, 548, 570
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	358, 460
BstV1I	GCAGC	4 cut(s)	125, 350, 627, 809
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	2 cut(s)	111, 756
BsuRI	GGCC	1 cut(s)	501
BsuTUI	ATCGAT	2 cut(s)	111, 756
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	3 cut(s)	84, 625, 662
BtsIMutI	CAGTG	7 cut(s)	84, 213, 300, 411, 421, 625, 662
Cac8I	GCNNGC	1 cut(s)	763
CaiI	CAGNNNCTG	1 cut(s)	408
Cfr13I	GGNCC	3 cut(s)	443, 464, 499
ClaI	ATCGAT	2 cut(s)	111, 756
CviAII	CATG	3 cut(s)	293, 713, 827
DdeI	CTNAG	4 cut(s)	532, 569, 666, 735
DpnI	GATC	4 cut(s)	24, 450, 792, 825
DpnII	GATC	4 cut(s)	22, 448, 790, 823
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	443, 464
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	3 cut(s)	296, 716, 830
FaiI	YATR	9 cut(s)	174, 183, 294, 324, 392, 714, 828, 836, 847
FalI	AAGNNNNNCTT	8 cut(s)	359, 391, 475, 507, 499, 531, 659, 691
FaqI	GGGAC	5 cut(s)	213, 341, 419, 477, 526
FatI	CATG	3 cut(s)	292, 712, 826
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	139, 364, 616, 798
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	139, 364, 616, 798
GluI	GCNGC	4 cut(s)	139, 364, 616, 798
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	2 cut(s)	11, 461
Hin1II	CATG	3 cut(s)	296, 716, 830
HincII	GTYRAC	2 cut(s)	298, 418
HindII	GTYRAC	2 cut(s)	298, 418
HindIII	AAGCTT	1 cut(s)	484
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	2 cut(s)	11, 461
HphI	GGTGA	2 cut(s)	673, 751
Hpy166II	GTNNAC	3 cut(s)	298, 418, 694
Hpy188III	TCNNGA	4 cut(s)	11, 20, 260, 788
Hpy8I	GTNNAC	3 cut(s)	298, 418, 694
HpyAV	CCTTC	4 cut(s)	133, 324, 685, 712
HpyCH4III	ACNGT	3 cut(s)	217, 415, 425
HpyCH4IV	ACGT	2 cut(s)	699, 813
HpyCH4V	TGCA	6 cut(s)	132, 272, 366, 402, 411, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 138, 408, 548, 570
HpyF3I	CTNAG	4 cut(s)	532, 569, 666, 735
HpySE526I	ACGT	2 cut(s)	699, 813
Hsp92II	CATG	3 cut(s)	296, 716, 830
KflI	GGGWCCC	1 cut(s)	464
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	448
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	22, 448, 790, 823
LmnI	GCTCC	3 cut(s)	160, 370, 599
Lsp1109I	GCAGC	4 cut(s)	125, 350, 627, 809
LweI	GCATC	4 cut(s)	172, 259, 442, 748
MaeII	ACGT	2 cut(s)	699, 813
MaeIII	GTNAC	3 cut(s)	79, 211, 679
MalI	GATC	4 cut(s)	24, 450, 792, 825
MboI	GATC	4 cut(s)	22, 448, 790, 823
MboII	GAAGA	4 cut(s)	63, 278, 352, 754
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	375, 813
MluCI	AATT	6 cut(s)	184, 255, 319, 437, 554, 585
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	4 cut(s)	242, 541, 637, 730
MroI	TCCGGA	1 cut(s)	10
MseI	TTAA	5 cut(s)	92, 177, 297, 377, 506
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	11, 461
MspR9I	CCNGG	2 cut(s)	360, 462
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	5 cut(s)	83, 138, 408, 548, 570
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	4 cut(s)	22, 448, 790, 823
NlaIII	CATG	3 cut(s)	296, 716, 830
NlaIV	GGNNCC	2 cut(s)	465, 466
NmuCI	GTSAC	3 cut(s)	79, 211, 679
NspI	RCATGY	1 cut(s)	296
PciI	ACATGT	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	810
PctI	GAATGC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	140, 365, 617, 799
Ppu21I	YACGTR	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	464
PscI	ACATGT	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	465, 466
PspPI	GGNCC	3 cut(s)	443, 464, 499
PspPPI	RGGWCCY	1 cut(s)	464
PstNI	CAGNNNCTG	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	92, 177, 297, 377, 506
SatI	GCNGC	4 cut(s)	139, 364, 616, 798
Sau3AI	GATC	4 cut(s)	22, 448, 790, 823
Sau96I	GGNCC	3 cut(s)	443, 464, 499
ScrFI	CCNGG	2 cut(s)	360, 462
SduI	GDGCHC	2 cut(s)	375, 813
SfaNI	GCATC	4 cut(s)	172, 259, 442, 748
SinI	GGWCC	2 cut(s)	443, 464
Sse9I	AATT	6 cut(s)	184, 255, 319, 437, 554, 585
SsiI	CCGC	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	358, 460
TaaI	ACNGT	3 cut(s)	217, 415, 425
TaiI	ACGT	2 cut(s)	702, 816
TaqI	TCGA	4 cut(s)	111, 166, 526, 756
TasI	AATT	6 cut(s)	184, 255, 319, 437, 554, 585
Tru1I	TTAA	5 cut(s)	92, 177, 297, 377, 506
Tru9I	TTAA	5 cut(s)	92, 177, 297, 377, 506
TscAI	CASTG	7 cut(s)	84, 220, 307, 418, 428, 625, 662
TseFI	GTSAC	3 cut(s)	79, 211, 679
TseI	GCWGC	4 cut(s)	138, 363, 615, 797
Tsp45I	GTSAC	3 cut(s)	79, 211, 679
TspDTI	ATGAA	3 cut(s)	239, 279, 507
TspRI	CASTG	7 cut(s)	84, 220, 307, 418, 428, 625, 662
VpaK11BI	GGWCC	2 cut(s)	443, 464
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.