AT3G57480

Zinc finger AN1 and C2H2 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21277270 .. 21279404
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57480.2

Sequence Viewer

Length: 750 bp
ATGGGAACTCCAGAATTTCCAGATCTGGGTAAACACTGCTCCGTCGATTATTGCAAACAGATCGATTTCTTGCCCTTCACATGCGATCGCTGCCTTCAGGTGTATTGTCTGGATCATCGTAGCTATATGAAACACGATTGTCCAAAAGGAAACAGAGGAGATGTCACTGTGGTTATTTGTCCATTATGTGCTAAAGGAGTTAGATTAAACCCTGACGAAGATCCCAACATCACCTGGGAGAAACATGTTAATACAGACTGTGATCCATCTAACTACGAAAAAGCTGTCAAGAAGAAGAAATGTCCTGTTCCTAGATGCAGAGAACTCTTGACATTCTCCAATACTATTAAATGTCGAGATTGTAGCATCGATCATTGTTTGAAACATCGGTTTGGACCTGATCATAGTTGTTCTGGACCCAAGAAGCCTGAATCGAGTTTCTCATTCATGGGTTTCTTGAGTACAAACACAAAAGAAGCTCCTGCATCATCATCATCTTCTTCGAGATGGTCTAGTCTTTTCGCTTCTGCGGAAGCAAGTATTAGTAGACTCGGTAACGATATAAGCCAGAAGTTACAGTTTGCGAGTGGCAATGATGGCAATTCAGAGAAAACGCAAGAGAGGAATGGAAAACAGAATTGTGGCAAAGTTACGGTTGATGTTTGTCCCAAATGTAGTAGAGGGTTTCGTGATCCGGTGGATCTATTGAAGCATATCGATAAGGATCATCGTGGCACTTCTAAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

249

Amino Acids

27.76

Weight (kDa)

8.59

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 13 - 50 4.8e-14 AN1-like Zinc finger
zf-C2H2_ZFAND2 PF25403 56 - 94 4.6e-19 ZFAND2A/B-like C2H2 zinc finger
zf-AN1 PF01428 101 - 141 3e-08 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 547
AciI CCGC 1 cut(s) 530
AclWI GGATC 6 cut(s) 120, 215, 257, 686, 708, 732
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 2 cut(s) 382, 709
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 3 cut(s) 123, 284, 479
AluI AGCT 3 cut(s) 123, 284, 479
AlwI GGATC 6 cut(s) 120, 215, 257, 686, 708, 732
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AsiSI GCGATCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 395, 416
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 2 cut(s) 395, 416
BbvI GCAGC 1 cut(s) 77
BccI CCATC 3 cut(s) 274, 501, 590
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 235
BclI TGATCA 1 cut(s) 400
BfaI CTAG 3 cut(s) 312, 513, 748
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 2 cut(s) 395, 416
BmgT120I GGNCC 2 cut(s) 395, 416
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 3 cut(s) 305, 375, 494
BpuEI CTTGAG 1 cut(s) 478
Bsa29I ATCGAT 3 cut(s) 63, 369, 717
BsaBI GATNNNNATC 1 cut(s) 723
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 1 cut(s) 235
BseCI ATCGAT 3 cut(s) 63, 369, 717
BseDI CCNNGG 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 598
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 88
BshVI ATCGAT 3 cut(s) 63, 369, 717
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 695
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 651
BspACI CCGC 1 cut(s) 530
BspDI ATCGAT 3 cut(s) 63, 369, 717
BspLI GGNNCC 1 cut(s) 418
BspPI GGATC 6 cut(s) 120, 215, 257, 686, 708, 732
BsrDI GCAATG 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 4 cut(s) 169, 260, 579, 655
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 90, 597
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 2 cut(s) 84, 248
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 3 cut(s) 22, 220, 700
BstYI RGATCY 3 cut(s) 22, 220, 700
Bsu15I ATCGAT 3 cut(s) 63, 369, 717
BsuTUI ATCGAT 3 cut(s) 63, 369, 717
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 165
Cfr13I GGNCC 2 cut(s) 395, 416
ClaI ATCGAT 3 cut(s) 63, 369, 717
Csp6I GTAC 1 cut(s) 462
CviAII CATG 3 cut(s) 81, 245, 448
CviJI RGCY 6 cut(s) 123, 284, 427, 479, 567, 746
CviKI_1 RGCY 6 cut(s) 123, 284, 427, 479, 567, 746
CviQI GTAC 1 cut(s) 462
Eco47I GGWCC 2 cut(s) 395, 416
Eco57I CTGAAG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 3 cut(s) 84, 248, 451
FaiI YATR 9 cut(s) 82, 126, 128, 187, 246, 405, 449, 563, 714
FaqI GGGAC 1 cut(s) 651
FatI CATG 3 cut(s) 80, 244, 447
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 3 cut(s) 312, 513, 748
GluI GCNGC 1 cut(s) 91
HapII CCGG 1 cut(s) 695
Hin1II CATG 3 cut(s) 84, 248, 451
HinfI GANTC 2 cut(s) 431, 549
HpaII CCGG 1 cut(s) 695
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 32, 548
Hpy188I TCNGA 1 cut(s) 607
Hpy8I GTNNAC 2 cut(s) 32, 548
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 85, 104
HpyCH4III ACNGT 4 cut(s) 169, 260, 579, 655
HpyCH4V TGCA 3 cut(s) 54, 318, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 597
Hsp92II CATG 3 cut(s) 84, 248, 451
Ksp22I TGATCA 1 cut(s) 400
LmnI GCTCC 2 cut(s) 44, 484
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 3 cut(s) 305, 375, 494
MaeI CTAG 3 cut(s) 312, 513, 748
MaeIII GTNAC 4 cut(s) 163, 554, 573, 649
MboII GAAGA 5 cut(s) 230, 304, 307, 489, 492
MflI RGATCY 3 cut(s) 22, 220, 700
MluCI AATT 3 cut(s) 14, 601, 637
MlyI GAGTC 1 cut(s) 543
MnlI CCTC 3 cut(s) 149, 615, 674
MseI TTAA 3 cut(s) 206, 249, 348
MspI CCGG 1 cut(s) 695
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 90, 597
NlaIII CATG 3 cut(s) 84, 248, 451
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 2 cut(s) 84, 248
PciI ACATGT 1 cut(s) 244
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 92
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
PscI ACATGT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 2 cut(s) 395, 416
PsuI RGATCY 3 cut(s) 22, 220, 700
PvuI CGATCG 1 cut(s) 88
RgaI GCGATCGC 1 cut(s) 88
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SaqAI TTAA 3 cut(s) 206, 249, 348
SatI GCNGC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 395, 416
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 1 cut(s) 235
SetI ASST 6 cut(s) 102, 125, 236, 286, 400, 481
SfaAI GCGATCGC 1 cut(s) 88
SfaNI GCATC 3 cut(s) 305, 375, 494
SgfI GCGATCGC 1 cut(s) 88
SinI GGWCC 2 cut(s) 395, 416
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
Sse9I AATT 3 cut(s) 14, 601, 637
SsiI CCGC 1 cut(s) 530
SspMI CTAG 3 cut(s) 312, 513, 748
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 4 cut(s) 169, 260, 579, 655
TaqI TCGA 7 cut(s) 45, 63, 355, 369, 434, 503, 717
TasI AATT 3 cut(s) 14, 601, 637
TatI WGTACW 1 cut(s) 461
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 206, 249, 348
Tru9I TTAA 3 cut(s) 206, 249, 348
TscAI CASTG 2 cut(s) 41, 172
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 143, 436
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 41, 172
VpaK11BI GGWCC 2 cut(s) 395, 416
XapI RAATTY 1 cut(s) 14
XceI RCATGY 2 cut(s) 84, 248
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 3 cut(s) 312, 513, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.