Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009954

Physical Location & Seq

Genomic Coordinates Forward (+)

6347839 .. 6348933

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTCTTAGATTACTCTAAGAAGTGGTATGTTTCGGAGAAAAGAAGGACGGTATTTTGTTTAGAGCATAGAAGCTACATTAAGCATAATTGTCCAAAAGGTGACCGAAAAAATGTCACTGTTGTCATCTGTCCCCTCTGTGCCAAAGGAGTTCATCTGATTCCCAATGAAGATCCGAACATTACTTGGGAGAGACATGTTAACACTGATTGCGACCCTTCTAATTATGAGAAAGCCACGAAGAAGAAAAAATGCCCTGTCCCTGGCTGCAAGGAGATCTTAACATTTTCCAACACAATCAAGTGCAGGGATTGCACGGTAGACCACTGTTTGAAGCACCGCTTTGGAATCGATCACAAATGTCCTGGACCCAAGAAACCAGAAGCAGGATTTCCCTTTTTGGGTTATTTAAGTAGGAGTAGGAAAGAAGTGTCAAAACCGAATCATGCTCCTGCTGCATCCTCCCCGAATTGGAGTAGCTTTCTTACTGCAGCTTCATCTTTTCGAGCCTCAGCTGAAGCAAGTGTGGCAAAACTGAGTAGCGAACTTAGCCAAAAGTGGCAGATAGCAAAGGATGGAACAGGGCAGAGTAGCAGCAGCAGCGGGGGTAGGAACGGGCAGGGTGAGGTGTGTCCTCAGTGGTGGCAACCGAGCTGCTGCGGTGAAGAAGGTGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1 zf-C2H2 zf-C2H2_4

Protein Analysis

227

Amino Acids

25.18

Weight (kDa)

9.03

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41835 AT3G57480 AT3G57480
fragaria_vesca	FvH4_6g23600
malus_domestica	MD12G1077300.v1.1 MD14G1070700.v1.1
prunus_persica	Prupe.7G063400_v2.0.a1 Prupe.7G063600_v2.0.a1
pyrus_communis	pycom12g06240 pycom14g06000
rosa_chinensis	RchiOBHm_Chr3g0481751
rosa_laevigata	RLG00000023381
rosa_multiflora	Rmu_ssc0000267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00399850 Rroxscaffold_6G00400210
rosa_rugosa	Rorug03G0193900
rosa_samantha	Rh3AG244600 Rh3BG280000 Rh3CG275000 Rh3DG271800
rosa_wichuraiana	Rw3G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	3 cut(s)	340, 603, 660
AclWI	GGATC	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	537
AfiI	CCNNNNNNNGG	4 cut(s)	263, 386, 401, 471
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	262, 364
AluBI	AGCT	5 cut(s)	75, 480, 494, 515, 654
AluI	AGCT	5 cut(s)	75, 480, 494, 515, 654
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	167
ApeKI	GCWGC	8 cut(s)	267, 455, 491, 594, 597, 600, 654, 657
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	113, 635, 674
AvaII	GGWCC	1 cut(s)	368
BbvCI	CCTCAGC	1 cut(s)	511
BbvI	GCAGC	8 cut(s)	254, 442, 503, 606, 609, 612, 641, 644
BccI	CCATC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	264, 366
BcoDI	GTCTC	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	8 cut(s)	268, 456, 492, 595, 598, 601, 655, 658
BlsI	GCNGC	8 cut(s)	269, 457, 493, 596, 599, 602, 656, 659
Bme1390I	CCNGG	2 cut(s)	264, 366
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	2 cut(s)	264, 366
BmsI	GCATC	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	511
Bsa29I	ATCGAT	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 386, 401, 471
BseBI	CCWGG	2 cut(s)	264, 366
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	458, 580
BseLI	CCNNNNNNNGG	4 cut(s)	263, 386, 401, 471
BseMII	CTCAG	3 cut(s)	525, 527, 650
BseXI	GCAGC	8 cut(s)	254, 442, 503, 606, 609, 612, 641, 644
BsgI	GTGCAG	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	351
BslFI	GGGAC	2 cut(s)	117, 245
BslI	CCNNNNNNNGG	4 cut(s)	263, 386, 401, 471
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	117, 245
Bsp143I	GATC	3 cut(s)	172, 276, 352
BspACI	CCGC	3 cut(s)	340, 603, 660
BspCNI	CTCAG	3 cut(s)	524, 528, 649
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	172, 276, 352
Bst2UI	CCWGG	2 cut(s)	264, 366
Bst4CI	ACNGT	4 cut(s)	52, 121, 319, 329
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstDEI	CTNAG	6 cut(s)	7, 18, 511, 536, 548, 636
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	458, 580
BstKTI	GATC	3 cut(s)	175, 279, 355
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	172, 276, 352
BstMWI	GCNNNNNNNGC	5 cut(s)	312, 455, 527, 549, 600
BstNI	CCWGG	2 cut(s)	264, 366
BstNSI	RCATGY	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	262, 364
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	8 cut(s)	254, 442, 503, 606, 609, 612, 641, 644
BstX2I	RGATCY	2 cut(s)	172, 276
BstYI	RGATCY	2 cut(s)	172, 276
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	458, 580
BtsIMutI	CAGTG	4 cut(s)	117, 204, 325, 644
Cfr13I	GGNCC	1 cut(s)	368
ClaI	ATCGAT	1 cut(s)	351
CviAII	CATG	2 cut(s)	197, 446
CviJI	RGCY	9 cut(s)	75, 236, 267, 480, 494, 509, 515, 552, 654
CviKI_1	RGCY	9 cut(s)	75, 236, 267, 480, 494, 509, 515, 552, 654
DdeI	CTNAG	6 cut(s)	7, 18, 511, 536, 548, 636
DpnI	GATC	3 cut(s)	174, 278, 354
DpnII	GATC	3 cut(s)	172, 276, 352
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	537
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	262, 364
FaeI	CATG	2 cut(s)	200, 449
FaiI	YATR	6 cut(s)	30, 69, 87, 198, 228, 447
FalI	AAGNNNNNCTT	4 cut(s)	263, 295, 326, 358
FaqI	GGGAC	2 cut(s)	117, 245
FatI	CATG	2 cut(s)	196, 445
FauI	CCCGC	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	8 cut(s)	268, 456, 492, 595, 598, 601, 655, 658
FokI	GGATG	2 cut(s)	445, 587
Fsp4HI	GCNGC	8 cut(s)	268, 456, 492, 595, 598, 601, 655, 658
GluI	GCNGC	8 cut(s)	268, 456, 492, 595, 598, 601, 655, 658
Hin1II	CATG	2 cut(s)	200, 449
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	160, 348, 442
HpaI	GTTAAC	1 cut(s)	202
HphI	GGTGA	3 cut(s)	113, 635, 674
Hpy166II	GTNNAC	2 cut(s)	202, 322
Hpy188I	TCNGA	3 cut(s)	37, 159, 177
Hpy8I	GTNNAC	2 cut(s)	202, 322
HpyAV	CCTTC	3 cut(s)	39, 228, 662
HpyCH4III	ACNGT	4 cut(s)	52, 121, 319, 329
HpyCH4V	TGCA	5 cut(s)	270, 306, 315, 458, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	312, 455, 527, 549, 600
HpyF3I	CTNAG	6 cut(s)	7, 18, 511, 536, 548, 636
Hsp92II	CATG	2 cut(s)	200, 449
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	172, 276, 352
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	8 cut(s)	254, 442, 503, 606, 609, 612, 641, 644
LweI	GCATC	1 cut(s)	467
MaeIII	GTNAC	3 cut(s)	101, 115, 671
MalI	GATC	3 cut(s)	174, 278, 354
MboI	GATC	3 cut(s)	172, 276, 352
MboII	GAAGA	4 cut(s)	182, 253, 256, 677
MfeI	CAATTG	1 cut(s)	676
MflI	RGATCY	2 cut(s)	172, 276
MluCI	AATT	4 cut(s)	88, 223, 469, 676
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	146, 472, 520, 619, 645
MseI	TTAA	4 cut(s)	81, 201, 281, 410
MspA1I	CMGCKG	2 cut(s)	515, 603
MspR9I	CCNGG	2 cut(s)	264, 366
MunI	CAATTG	1 cut(s)	676
MvaI	CCWGG	2 cut(s)	264, 366
MwoI	GCNNNNNNNGC	5 cut(s)	312, 455, 527, 549, 600
NdeII	GATC	3 cut(s)	172, 276, 352
NlaIII	CATG	2 cut(s)	200, 449
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	101, 115, 671
NspI	RCATGY	1 cut(s)	200
PciI	ACATGT	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	160, 348, 442
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	8 cut(s)	269, 457, 493, 596, 599, 602, 656, 659
PscI	ACATGT	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	262, 364
PspEI	GGTNACC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	262, 364
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	172, 276
PvuII	CAGCTG	1 cut(s)	515
SaqAI	TTAA	4 cut(s)	81, 201, 281, 410
SatI	GCNGC	8 cut(s)	268, 456, 492, 595, 598, 601, 655, 658
Sau3AI	GATC	3 cut(s)	172, 276, 352
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	264, 366
SetI	ASST	8 cut(s)	77, 103, 482, 496, 517, 630, 656, 673
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	368
Sse9I	AATT	4 cut(s)	88, 223, 469, 676
SsiI	CCGC	3 cut(s)	340, 603, 660
StyD4I	CCNGG	2 cut(s)	262, 364
TaaI	ACNGT	4 cut(s)	52, 121, 319, 329
TaqI	TCGA	2 cut(s)	351, 505
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	88, 223, 469, 676
TfiI	GAWTC	3 cut(s)	160, 348, 442
Tru1I	TTAA	4 cut(s)	81, 201, 281, 410
Tru9I	TTAA	4 cut(s)	81, 201, 281, 410
TscAI	CASTG	4 cut(s)	124, 211, 332, 644
TseFI	GTSAC	3 cut(s)	101, 115, 671
TseI	GCWGC	8 cut(s)	267, 455, 491, 594, 597, 600, 654, 657
Tsp45I	GTSAC	3 cut(s)	101, 115, 671
TspDTI	ATGAA	3 cut(s)	143, 183, 486
TspRI	CASTG	4 cut(s)	124, 211, 332, 644
VpaK11BI	GGWCC	1 cut(s)	368
XceI	RCATGY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.