AT2G41910

Protein kinase, catalytic domain (InterPro IPR000719), Serine threonine-protein kinase-like domain (InterPro IPR017442), Protein kinase-like domain (InterPro IPR011009), Serine threonine-protein kinase, active site (InterPro IPR008271)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018742
Physical Location & Seq
Forward (+)
17496956 .. 17498077
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41910.1

Sequence Viewer

Length: 1122 bp
ATGGTGCCACCAGAGCTAGAATTCAACAAGTATCTCGGAAAGGGTTCATACGGTTCGGTGAGTCTTTTCAAGTATTCGAAACCACGCACGACTCTCTACACCGCGGTGATGACTTGCAACTATAAAAACGCTGAGTCTCTCGAGAAAGAGTTTGGAATCTTGTCTGAATTCAAGGGTTGTTCGAGAATTGTCCAGTGCTATGAAAACAGAGTTATAGAGAATCTGGACGTTGAGGGTAACAAAGAGTATATGATGCTAATGGAGTACGCAGCTGGAGGAAGCTTGAGGACTTTCATGAAACGTTCCGAAGACAAGAAATTGCCTGATCCTTTGATAAGAGAGTTTACTCGAATGATCCTCGAAGGCTTAGCCACAATTCACGGACAGGGCTATGTCCACTGCGATCTCAAACCCGATAACATCCTCGTTTTCCCAAGATGTGTCTACAAGAAGAGAGCATGGAGATCGTCTTACGAATTGAAGATTTCTGATTTTGGATTGTCGAAAAGAGATGGAGACAGTAAGTGGTGGCATCCTCATCGTCCGTTTGTGGGAACTGCGATCTACATGTCGCCGGGATCGGTTTCTCACGGCGAGACAGGGAGAGGACTTGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAAAGAAACCATGGTGGCATAATAACTATGACTTGAAGGATCTCAAGAACTGGTACGCGCCAATGATTCCGAGTGATCTTCCTTGCGATGCAAAACACTTTATTATGGCTTGCTTTGCGTTAAATACAAACGAGAGAAGAGACGCATTGACATTGTTGGAGCATAGCTTCTTGCGTGGGGTGGTTAATAAGATCACAAAGCCTCATGTGAAGAATGAGAATCCGAAAGAAATTGCACTGGCATTGGGGAGAGTTGTGAGGAGACCATCAAAAGTTCTTACGTCCATTTTCAAAAGAGCCGGAGAGTTGATGAAGATCATCAAGAAGCAGCCAAGAGCACCGAGATCCAATTTGCTTCCTGTTCACATTTGTCACTTAGCACAACCATCTCAAAAGATTTGTTTTTTCATTTATTGTTCTCTTTGTGTTGTGTTTATTATCTTAACGGTAGTTTGTATGTTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

373

Amino Acids

42.91

Weight (kDa)

9.36

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 6 - 270 3.4e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 8 - 276 1.2e-41 Protein kinase domain
ABC1 PF03109 81 - 170 9.7e-06 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018742)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05060 AT2G34290 AT2G41910 AT2G41920 AT2G41930 AT2G42550 AT5G12090 AT5G27510 AT5G27790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 444
AccII CGCG 2 cut(s) 104, 713
AciI CCGC 2 cut(s) 102, 104
AclI AACGTT 1 cut(s) 301
AclWI GGATC 5 cut(s) 320, 349, 586, 702, 993
AcsI RAATTY 2 cut(s) 20, 167
AfaI GTAC 3 cut(s) 266, 650, 710
AfiI CCNNNNNNNGG 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 6 cut(s) 25, 70, 172, 481, 691, 946
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 4 cut(s) 16, 272, 282, 822
AluI AGCT 4 cut(s) 16, 272, 282, 822
Alw21I GWGCWC 1 cut(s) 994
Alw26I GTCTC 5 cut(s) 141, 510, 590, 789, 910
AlwI GGATC 5 cut(s) 320, 349, 586, 702, 993
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 269, 982
ApoI RAATTY 2 cut(s) 20, 167
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 715
AsuC2I CCSGG 1 cut(s) 576
AsuHPI GGTGA 2 cut(s) 70, 118
AsuII TTCGAA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 140
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 994
BbvI GCAGC 2 cut(s) 281, 994
BccI CCATC 3 cut(s) 506, 928, 1048
BceAI ACGGC 1 cut(s) 607
BcgI CGANNNNNNTGC 4 cut(s) 447, 481, 521, 555
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 5 cut(s) 141, 510, 590, 789, 910
BfaI CTAG 1 cut(s) 17
BisI GCNGC 2 cut(s) 270, 983
BlpI GCTNAGC 1 cut(s) 367
BlsI GCNGC 2 cut(s) 271, 984
Bme1390I CCNGG 1 cut(s) 576
BmeT110I CYCGRG 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 243, 541, 733
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 367
Bpu14I TTCGAA 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 304, 683
BpuMI CCSGG 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 968
BsaI GGTCTC 1 cut(s) 910
BsaJI CCNNGG 2 cut(s) 102, 665
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 4 cut(s) 193, 658, 710, 897
Bse8I GATNNNNATC 1 cut(s) 968
BseDI CCNNGG 2 cut(s) 102, 665
BseGI GGATG 3 cut(s) 420, 532, 635
BseJI GATNNNNATC 1 cut(s) 968
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 4 cut(s) 193, 658, 710, 897
BseRI GAGGAG 1 cut(s) 928
BseXI GCAGC 2 cut(s) 281, 994
Bsh1236I CGCG 2 cut(s) 104, 713
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 994
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 575, 954
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 5 cut(s) 141, 510, 590, 789, 910
BsmBI CGTCTC 1 cut(s) 789
Bso31I GGTCTC 1 cut(s) 910
BsoBI CYCGRG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 994
Bsp1407I TGTACA 1 cut(s) 648
Bsp1720I GCTNAGC 1 cut(s) 367
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 2 cut(s) 102, 104
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 2 cut(s) 104, 713
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 5 cut(s) 320, 349, 586, 702, 993
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 910
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 4 cut(s) 193, 658, 710, 897
BssECI CCNNGG 2 cut(s) 102, 665
BssT1I CCWWGG 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 53, 521, 1102
Bst6I CTCTTC 2 cut(s) 446, 787
BstAUI TGTACA 1 cut(s) 648
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 3 cut(s) 132, 367, 1030
BstDSI CCRYGG 2 cut(s) 102, 665
BstF5I GGATG 3 cut(s) 420, 532, 635
BstFNI CGCG 2 cut(s) 104, 713
BstHHI GCGC 1 cut(s) 715
BstMAI GTCTC 5 cut(s) 141, 510, 590, 789, 910
BstMWI GCNNNNNNNGC 2 cut(s) 13, 770
BstNSI RCATGY 1 cut(s) 571
BstSCI CCNGG 1 cut(s) 574
BstUI CGCG 2 cut(s) 104, 713
BstV1I GCAGC 2 cut(s) 281, 994
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 2 cut(s) 694, 998
BstYI RGATCY 2 cut(s) 694, 998
BtgI CCRYGG 2 cut(s) 102, 665
BtgZI GCGATG 1 cut(s) 756
BtsCI GGATG 3 cut(s) 420, 532, 635
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 4 cut(s) 200, 397, 651, 890
Cac8I GCNNGC 1 cut(s) 766
CciI TCATGA 1 cut(s) 294
CfoI GCGC 1 cut(s) 715
Cfr42I CCGCGG 1 cut(s) 105
CseI GACGC 1 cut(s) 806
Csp6I GTAC 3 cut(s) 265, 649, 709
CviAII CATG 5 cut(s) 295, 459, 568, 666, 860
CviQI GTAC 3 cut(s) 265, 649, 709
DdeI CTNAG 3 cut(s) 132, 367, 1030
Eam1104I CTCTTC 2 cut(s) 446, 787
EarI CTCTTC 2 cut(s) 446, 787
Eco130I CCWWGG 1 cut(s) 665
Eco31I GGTCTC 1 cut(s) 910
Eco88I CYCGRG 1 cut(s) 140
EcoRI GAATTC 2 cut(s) 20, 167
EcoT14I CCWWGG 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 665
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 5 cut(s) 298, 462, 571, 669, 863
FatI CATG 5 cut(s) 294, 458, 567, 665, 859
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 2 cut(s) 270, 983
FokI GGATG 3 cut(s) 407, 519, 642
Fsp4HI GCNGC 2 cut(s) 270, 983
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 714
GluI GCNGC 2 cut(s) 270, 983
GsuI CTGGAG 1 cut(s) 294
HapII CCGG 2 cut(s) 575, 954
HgaI GACGC 1 cut(s) 806
HhaI GCGC 1 cut(s) 715
Hin1II CATG 5 cut(s) 298, 462, 571, 669, 863
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 7 cut(s) 61, 91, 134, 156, 220, 721, 874
HpaII CCGG 2 cut(s) 575, 954
HphI GGTGA 2 cut(s) 70, 118
Hpy166II GTNNAC 5 cut(s) 345, 397, 445, 651, 1018
Hpy188I TCNGA 6 cut(s) 38, 166, 307, 490, 726, 879
Hpy188III TCNNGA 7 cut(s) 140, 142, 183, 224, 295, 700, 976
Hpy8I GTNNAC 5 cut(s) 345, 397, 445, 651, 1018
HpyAV CCTTC 2 cut(s) 356, 685
HpyCH4III ACNGT 3 cut(s) 53, 521, 1102
HpyCH4IV ACGT 3 cut(s) 228, 301, 935
HpyCH4V TGCA 3 cut(s) 117, 746, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 770
HpyF3I CTNAG 3 cut(s) 132, 367, 1030
HpySE526I ACGT 3 cut(s) 228, 301, 935
Hsp92II CATG 5 cut(s) 298, 462, 571, 669, 863
HspAI GCGC 1 cut(s) 713
KspI CCGCGG 1 cut(s) 105
LmnI GCTCC 1 cut(s) 814
Lsp1109I GCAGC 2 cut(s) 281, 994
LweI GCATC 3 cut(s) 243, 541, 733
MaeI CTAG 1 cut(s) 17
MaeII ACGT 3 cut(s) 228, 301, 935
MaeIII GTNAC 2 cut(s) 236, 1025
MboII GAAGA 7 cut(s) 320, 463, 493, 725, 804, 877, 979
MflI RGATCY 2 cut(s) 694, 998
MhlI GDGCHC 1 cut(s) 994
MluCI AATT 8 cut(s) 20, 167, 186, 317, 375, 476, 885, 1003
MlyI GAGTC 3 cut(s) 70, 85, 143
MmeI TCCRAC 2 cut(s) 621, 792
MnlI CCTC 9 cut(s) 226, 269, 279, 368, 434, 546, 599, 867, 906
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 3 cut(s) 776, 840, 1097
MslI CAYNNNNRTG 2 cut(s) 104, 628
MspA1I CMGCKG 2 cut(s) 104, 272
MspI CCGG 2 cut(s) 575, 954
MspR9I CCNGG 1 cut(s) 576
MvnI CGCG 2 cut(s) 104, 713
MwoI GCNNNNNNNGC 2 cut(s) 13, 770
NciI CCSGG 1 cut(s) 576
NcoI CCATGG 1 cut(s) 665
NlaIII CATG 5 cut(s) 298, 462, 571, 669, 863
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 1025
NspI RCATGY 1 cut(s) 571
NspV TTCGAA 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 294
PciI ACATGT 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 4 cut(s) 156, 220, 721, 874
PkrI GCNGC 2 cut(s) 271, 984
PleI GAGTC 3 cut(s) 69, 85, 142
PpsI GAGTC 3 cut(s) 69, 85, 142
PscI ACATGT 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 694, 998
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 3 cut(s) 266, 650, 710
RsaNI GTAC 3 cut(s) 265, 649, 709
RseI CAYNNNNRTG 2 cut(s) 104, 628
SacII CCGCGG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 776, 840, 1097
SatI GCNGC 2 cut(s) 270, 983
SchI GAGTC 3 cut(s) 70, 85, 143
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 1 cut(s) 994
SetI ASST 7 cut(s) 18, 231, 274, 284, 304, 824, 938
SfaNI GCATC 3 cut(s) 243, 541, 733
Sfr274I CTCGAG 1 cut(s) 140
Sfr303I CCGCGG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 77
SgrBI CCGCGG 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 2 cut(s) 104, 628
SmlI CTYRAG 3 cut(s) 140, 283, 698
SmoI CTYRAG 3 cut(s) 140, 283, 698
Sse9I AATT 8 cut(s) 20, 167, 186, 317, 375, 476, 885, 1003
SsiI CCGC 2 cut(s) 102, 104
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 3 cut(s) 53, 521, 1102
TaiI ACGT 3 cut(s) 231, 304, 938
TaqI TCGA 6 cut(s) 77, 141, 182, 349, 360, 503
TasI AATT 8 cut(s) 20, 167, 186, 317, 375, 476, 885, 1003
TatI WGTACW 1 cut(s) 648
TfiI GAWTC 4 cut(s) 156, 220, 721, 874
Tru1I TTAA 3 cut(s) 776, 840, 1097
Tru9I TTAA 3 cut(s) 776, 840, 1097
TscAI CASTG 4 cut(s) 200, 404, 658, 897
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 2 cut(s) 269, 982
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 6 cut(s) 36, 216, 283, 311, 980, 1051
TspGWI ACGGA 2 cut(s) 396, 534
TspRI CASTG 4 cut(s) 200, 404, 658, 897
XapI RAATTY 2 cut(s) 20, 167
XceI RCATGY 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.