AT2G41920

Protein kinase, catalytic domain (InterPro IPR000719), Serine threonine-protein kinase-like domain (InterPro IPR017442), Protein kinase-like domain (InterPro IPR011009), Serine threonine-protein kinase, active site (InterPro IPR008271)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018742
Physical Location & Seq
Forward (+)
17499404 .. 17500452
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41920.1

Sequence Viewer

Length: 957 bp
ATGGTGGCGTTAGATTTGGAGTTCGAAAGGTATCCGGGGGAACGTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACAAAAGACAACGCGACGGCGAGACTCAATACGCCGCCGTGAAAACATCTAGCGACGAAAATGCTAAGTCTCTCTACAAAGAGTTTCAGATCCTCTCTCAATTCAAGGGTTGTTCGAGAATCGTCCAATGCTACGGGAATGGAGTAAAAGAGATATTTAACGACAAGGGTTACGTAGAATACAAGATTGCCATGGAGTACGCATTTGGAGGAAGCTTGAGCGATTTCATGGACCGATTCAAAGACAGAAAATTGTCTGATTCGATGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCACGATTCACAGACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCTAGTTCTGTCTACAAGAACGGCGCGTGGATCAGATCCTACGAATTGAAGATTTCTGATTTCGGGATGTCGAAAAGAGATGGAGACACTCAGTGGTGGCAACCTCGCAAACCATATGTGGGAACACCGATCTATATGTCGCCTGAGTCGATCTCTCACGGGGAGATAGGGAAAGGACTTGATTTATGGTCGTTGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGAAGCCATGGTGGCATACTAACTATGAATTAGAAGAGCTCATGAAGTGTTATGAGCCGTTGTTTCCGCGTAATCTTCCTTGCGATGCAAAACTCTTTCTCATGACCTGCTTTGCGTCCGAACCAGATGAGAGGAAAGATGCGTTGACATTGTTGAGGCAAAGCTTCTTGCATGGAGATGTCAATAAGTTCACAAACCGTCAGATGAATGTGAAGATTGACAGTGCGGATGATTTTACCCTGCAACTGGAGAAAGTTAGCCAGATGCTTTCGGAAATTAGGACTATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

318

Amino Acids

37.08

Weight (kDa)

7.0

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 8 - 272 1.1e-27 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 13 - 277 1.1e-40 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018742)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05060 AT2G34290 AT2G41910 AT2G41920 AT2G41930 AT2G42550 AT5G12090 AT5G27510 AT5G27790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 779
AccI GTMKAC 1 cut(s) 450
AccII CGCG 3 cut(s) 87, 464, 733
AciI CCGC 3 cut(s) 108, 731, 890
AclI AACGTT 1 cut(s) 43
AclWI GGATC 3 cut(s) 157, 468, 476
AdeI CACNNNGTG 1 cut(s) 531
AfaI GTAC 3 cut(s) 74, 272, 656
AfiI CCNNNNNNNGG 2 cut(s) 557, 910
AgsI TTSAA 4 cut(s) 70, 178, 313, 487
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 3 cut(s) 288, 703, 828
AluI AGCT 3 cut(s) 288, 703, 828
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 4 cut(s) 68, 89, 147, 516
AlwI GGATC 3 cut(s) 157, 468, 476
Ama87I CYCGRG 1 cut(s) 365
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 304
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 705
Bbv12I GWGCWC 1 cut(s) 705
BccI CCATC 1 cut(s) 512
BceAI ACGGC 5 cut(s) 95, 106, 409, 475, 706
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 4 cut(s) 68, 89, 147, 516
BfaI CTAG 3 cut(s) 123, 441, 660
BfuAI ACCTGC 1 cut(s) 779
BfuI GTATCC 1 cut(s) 42
BglI GCCNNNNNGGC 1 cut(s) 676
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 3 cut(s) 739, 793, 918
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpmI CTGGAG 1 cut(s) 932
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 3 cut(s) 35, 264, 671
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 910
Bse1I ACTGG 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 35, 264, 671
BseGI GGATG 4 cut(s) 426, 510, 641, 898
BseLI CCNNNNNNNGG 2 cut(s) 557, 910
BseMII CTCAG 2 cut(s) 542, 573
BseNI ACTGG 1 cut(s) 915
Bsh1236I CGCG 3 cut(s) 87, 464, 733
BsiHKAI GWGCWC 1 cut(s) 705
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 557, 910
BsmAI GTCTC 4 cut(s) 68, 89, 147, 516
BsoBI CYCGRG 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 705
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
Bsp19I CCATGG 2 cut(s) 264, 671
BspACI CCGC 3 cut(s) 108, 731, 890
BspCNI CTCAG 2 cut(s) 541, 574
BspFNI CGCG 3 cut(s) 87, 464, 733
BspHI TCATGA 2 cut(s) 705, 765
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 3 cut(s) 157, 468, 476
BspQI GCTCTTC 1 cut(s) 693
BspT104I TTCGAA 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 1 cut(s) 915
BssECI CCNNGG 3 cut(s) 35, 264, 671
BssMI GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
BssT1I CCWWGG 2 cut(s) 264, 671
Bst4CI ACNGT 2 cut(s) 863, 887
Bst6I CTCTTC 2 cut(s) 71, 693
BstAUI TGTACA 1 cut(s) 654
BstBAI YACGTR 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 24
BstDEI CTNAG 3 cut(s) 138, 528, 582
BstDSI CCRYGG 2 cut(s) 264, 671
BstF5I GGATG 4 cut(s) 426, 510, 641, 898
BstFNI CGCG 3 cut(s) 87, 464, 733
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 7 cut(s) 165, 342, 412, 471, 476, 570, 591
BstMAI GTCTC 4 cut(s) 68, 89, 147, 516
BstMBI GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
BstMWI GCNNNNNNNGC 1 cut(s) 676
BstSCI CCNGG 1 cut(s) 34
BstSNI TACGTA 1 cut(s) 247
BstUI CGCG 3 cut(s) 87, 464, 733
BstX2I RGATCY 2 cut(s) 162, 473
BstYI RGATCY 2 cut(s) 162, 473
BsuI GTATCC 1 cut(s) 42
BtgI CCRYGG 2 cut(s) 264, 671
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 4 cut(s) 426, 510, 641, 898
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 3 cut(s) 403, 536, 892
BveI ACCTGC 1 cut(s) 779
CciI TCATGA 2 cut(s) 705, 765
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 1 cut(s) 768
Csp6I GTAC 3 cut(s) 73, 271, 655
CviAII CATG 6 cut(s) 265, 301, 672, 706, 766, 836
CviJI RGCY 8 cut(s) 288, 377, 396, 670, 703, 721, 828, 924
CviKI_1 RGCY 8 cut(s) 288, 377, 396, 670, 703, 721, 828, 924
CviQI GTAC 3 cut(s) 73, 271, 655
DdeI CTNAG 3 cut(s) 138, 528, 582
DpnI GATC 7 cut(s) 164, 341, 411, 470, 475, 569, 590
DpnII GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
DraIII CACNNNGTG 1 cut(s) 531
Eam1104I CTCTTC 2 cut(s) 71, 693
EarI CTCTTC 2 cut(s) 71, 693
Ecl136II GAGCTC 1 cut(s) 703
Eco105I TACGTA 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 264, 671
Eco24I GRGCYC 1 cut(s) 705
Eco47I GGWCC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 703
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 703
EcoT14I CCWWGG 2 cut(s) 264, 671
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 2 cut(s) 264, 671
FaeI CATG 6 cut(s) 268, 304, 675, 709, 769, 839
FatI CATG 6 cut(s) 264, 300, 671, 705, 765, 835
FauNDI CATATG 1 cut(s) 553
FbaI TGATCA 1 cut(s) 339
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 4 cut(s) 413, 517, 648, 905
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 3 cut(s) 123, 441, 660
GlaI GCGC 1 cut(s) 463
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 932
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 768
HhaI GCGC 1 cut(s) 464
Hin1II CATG 6 cut(s) 268, 304, 675, 709, 769, 839
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HindIII AAGCTT 2 cut(s) 286, 826
HinfI GANTC 7 cut(s) 61, 97, 192, 309, 332, 382, 584
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 6 cut(s) 351, 403, 451, 657, 810, 855
Hpy188I TCNGA 8 cut(s) 162, 331, 344, 473, 496, 784, 867, 937
Hpy188III TCNNGA 5 cut(s) 189, 365, 502, 706, 766
Hpy8I GTNNAC 6 cut(s) 351, 403, 451, 657, 810, 855
Hpy99I CGWCG 2 cut(s) 92, 131
HpyCH4III ACNGT 2 cut(s) 863, 887
HpyCH4IV ACGT 2 cut(s) 43, 246
HpyCH4V TGCA 3 cut(s) 752, 835, 907
HpyF10VI GCNNNNNNNGC 1 cut(s) 676
HpyF3I CTNAG 3 cut(s) 138, 528, 582
HpySE526I ACGT 2 cut(s) 43, 246
Hsp92II CATG 6 cut(s) 268, 304, 675, 709, 769, 839
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
LguI GCTCTTC 1 cut(s) 693
LpnPI CCDG 7 cut(s) 48, 594, 784, 801, 896, 917, 938
LweI GCATC 3 cut(s) 739, 793, 918
MaeI CTAG 3 cut(s) 123, 441, 660
MaeII ACGT 2 cut(s) 43, 246
MaeIII GTNAC 1 cut(s) 242
MalI GATC 7 cut(s) 164, 341, 411, 470, 475, 569, 590
MboI GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
MboII GAAGA 5 cut(s) 58, 499, 710, 731, 889
MflI RGATCY 2 cut(s) 162, 473
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 5 cut(s) 173, 323, 482, 692, 939
MlyI GAGTC 3 cut(s) 70, 91, 593
MmeI TCCRAC 1 cut(s) 627
MnlI CCTC 6 cut(s) 176, 275, 361, 552, 789, 813
MseI TTAA 2 cut(s) 231, 955
MslI CAYNNNNRTG 2 cut(s) 396, 840
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 36
MvnI CGCG 3 cut(s) 87, 464, 733
MwoI GCNNNNNNNGC 1 cut(s) 676
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 2 cut(s) 264, 671
NdeI CATATG 1 cut(s) 553
NdeII GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
NlaIII CATG 6 cut(s) 268, 304, 675, 709, 769, 839
NspV TTCGAA 1 cut(s) 24
PaeR7I CTCGAG 1 cut(s) 365
PagI TCATGA 2 cut(s) 705, 765
PciSI GCTCTTC 1 cut(s) 693
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PfeI GAWTC 4 cut(s) 192, 309, 332, 382
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 3 cut(s) 69, 91, 592
PpsI GAGTC 3 cut(s) 69, 91, 592
Ppu21I YACGTR 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 43
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 2 cut(s) 162, 473
RsaI GTAC 3 cut(s) 74, 272, 656
RsaNI GTAC 3 cut(s) 73, 271, 655
RseI CAYNNNNRTG 2 cut(s) 396, 840
SacI GAGCTC 1 cut(s) 705
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 2 cut(s) 231, 955
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 7 cut(s) 162, 339, 409, 468, 473, 567, 588
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 3 cut(s) 70, 91, 593
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 705
SetI ASST 8 cut(s) 32, 46, 249, 290, 544, 705, 773, 830
SfaNI GCATC 3 cut(s) 739, 793, 918
Sfr274I CTCGAG 1 cut(s) 365
SfuI TTCGAA 1 cut(s) 24
SinI GGWCC 1 cut(s) 304
SlaI CTCGAG 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 396, 840
SmlI CTYRAG 2 cut(s) 289, 365
SmoI CTYRAG 2 cut(s) 289, 365
SnaBI TACGTA 1 cut(s) 247
Sse9I AATT 5 cut(s) 173, 323, 482, 692, 939
SsiI CCGC 3 cut(s) 108, 731, 890
SspMI CTAG 3 cut(s) 123, 441, 660
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 2 cut(s) 264, 671
TaaI ACNGT 2 cut(s) 863, 887
TaiI ACGT 2 cut(s) 46, 249
TaqI TCGA 6 cut(s) 24, 188, 335, 366, 509, 587
TaqII GACCGA 1 cut(s) 321
TasI AATT 5 cut(s) 173, 323, 482, 692, 939
TatI WGTACW 2 cut(s) 72, 654
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 4 cut(s) 192, 309, 332, 382
Tru1I TTAA 2 cut(s) 231, 955
Tru9I TTAA 2 cut(s) 231, 955
TscAI CASTG 3 cut(s) 410, 536, 892
TspDTI ATGAA 4 cut(s) 289, 705, 722, 884
TspRI CASTG 3 cut(s) 410, 536, 892
VpaK11BI GGWCC 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 3 cut(s) 123, 441, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.