AT2G41930

Protein kinase, catalytic domain (InterPro IPR000719), Serine threonine-protein kinase-like domain (InterPro IPR017442), Protein kinase-like domain (InterPro IPR011009), Serine threonine-protein kinase, active site (InterPro IPR008271)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018742
Physical Location & Seq
Forward (+)
17501629 .. 17502686
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41930.1

Sequence Viewer

Length: 1056 bp
ATGTCGCCGGAGATGGAATTCGTGAAGGTTTTGGGAAAGGGTACTTACGGCTCCGTCGAGCTCTTCAGCCACAAACAAAACGACGGATCGTTGCTCTACAACGCAGTGAAGATCATGGACTCTGAGAACTACGGTTCTATAGACCAAGAGTTTCGAATTCTGTCGGAACTCAGAGGATGTCCTTGTATCGTGCAATTGTGTGGGAACTCTCTTGTTCAAGGAATTGATTGCAATGGAAAAAAAGTTTACATGATGTCAATGGAGTATGCAGCTGCTGGTACTCTAACTAATTTCATCAAAAGAAACCGAACGAAGTTGTCGGATTCTGTTATTAAAGACTTCACTCGTATGATTCTACAAGGATTGGTCTCGATTCATAATCATGGTTATGTTCATTGTGATCTTAAACCGGACAATATCCTTCTTTTTCCTCTTTACGATAAAGATACGTGGAATTGTTCTTACGAGTTGAAGATTTCGGATTTCGGAATATCGACAAGGGCCGGAGACAAATCTGGTTGTTGGAGAGTCGATGAACCGTGGGTGGGAACGTCTATCTACATGTCTCCTGAGTCAGTCAGCGACGGCACCACCGTTGAGAAAACCCTAGATTTGTGGTCACTTGGTTGCATTGTGTTGAAGATGTATACCGGTAAGCGGCCATGGTTAGGGTTTGAGAAAGATGTTAAGTCTCTTCTTTTGAATCAAAAGGCACCAGAGATTCCAGAGACTCTGCCGTGTGATGCAAGGCTGTTTTTGGAGAAGTGTTTCTCAAGAAAACCTGAGGAGAGAGGATCAGCTTCGGAGTTGCTGTTGCATCCGTTTTTGACCGGAGATGAGAAGAAGGGTTCTTCCGTCGCCGGTGGAGAGAGGACGGGGATGGTGTTGAGGCTCAGAAAACCTCCGCCGATATCGAAAGATATTCCAACGAAGCCACGGAAATTGAAGGTTATTTCACAAAAGCCCCAACAGTTAAAGAAAGTCTCGAATAAACCCCTAAAGGTGAAGATTGTTCCTCCGAGACCCCCAAGATCCGATTTTGTCCCCGTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

351

Amino Acids

39.4

Weight (kDa)

9.07

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 6 - 276 1.5e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 270 4.6e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018742)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05060 AT2G34290 AT2G41910 AT2G41920 AT2G41930 AT2G42550 AT5G12090 AT5G27510 AT5G27790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 587, 712
AccI GTMKAC 1 cut(s) 647
AciI CCGC 2 cut(s) 658, 905
AclWI GGATC 3 cut(s) 94, 802, 1026
AcoI YGGCCR 1 cut(s) 659
AcsI RAATTY 2 cut(s) 17, 156
AcuI CTGAAG 1 cut(s) 49
AfaI GTAC 2 cut(s) 43, 280
AfiI CCNNNNNNNGG 3 cut(s) 545, 657, 668
AflIII ACRYGT 1 cut(s) 561
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 5 cut(s) 218, 472, 640, 703, 946
AluBI AGCT 3 cut(s) 61, 272, 800
AluI AGCT 3 cut(s) 61, 272, 800
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 7 cut(s) 373, 501, 570, 696, 722, 988, 1015
AlwI GGATC 3 cut(s) 94, 802, 1026
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 2 cut(s) 501, 659
ApeKI GCWGC 2 cut(s) 269, 272
ApoI RAATTY 2 cut(s) 17, 156
AsiGI ACCGGT 1 cut(s) 650
Asp700I GAANNNNTTC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 1015
AsuII TTCGAA 1 cut(s) 154
AxyI CCTNAGG 1 cut(s) 783
BanI GGYRCC 2 cut(s) 587, 712
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 259, 281
BccI CCATC 2 cut(s) 7, 874
BceAI ACGGC 3 cut(s) 64, 601, 721
BcoDI GTCTC 7 cut(s) 373, 501, 570, 696, 722, 988, 1015
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 3 cut(s) 270, 273, 659
BlsI GCNGC 3 cut(s) 271, 274, 660
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 3 cut(s) 52, 589, 714
BmsI GCATC 2 cut(s) 733, 826
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 757
BsaAI YACGTR 1 cut(s) 450
BsaI GGTCTC 2 cut(s) 373, 1015
BsaJI CCNNGG 3 cut(s) 539, 662, 935
BsaWI WCCGGW 3 cut(s) 409, 650, 830
BsaXI ACNNNNNCTCC 2 cut(s) 797, 827
Bsc4I CCNNNNNNNGG 3 cut(s) 545, 657, 668
Bse118I RCCGGY 2 cut(s) 650, 860
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 238
BseDI CCNNGG 3 cut(s) 539, 662, 935
BseGI GGATG 3 cut(s) 182, 817, 885
BseLI CCNNNNNNNGG 3 cut(s) 545, 657, 668
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 5 cut(s) 114, 184, 561, 774, 907
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 2 cut(s) 259, 281
BshFI GGCC 2 cut(s) 503, 661
BshNI GGYRCC 2 cut(s) 587, 712
BshTI ACCGGT 1 cut(s) 650
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 6 cut(s) 8, 410, 504, 651, 831, 861
BslFI GGGAC 1 cut(s) 1028
BslI CCNNNNNNNGG 3 cut(s) 545, 657, 668
BsmAI GTCTC 7 cut(s) 373, 501, 570, 696, 722, 988, 1015
BsmFI GGGAC 1 cut(s) 1028
BsnI GGCC 2 cut(s) 503, 661
Bso31I GGTCTC 2 cut(s) 373, 1015
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 5 cut(s) 86, 111, 400, 794, 1031
Bsp19I CCATGG 1 cut(s) 662
BspACI CCGC 2 cut(s) 658, 905
BspANI GGCC 2 cut(s) 503, 661
BspCNI CTCAG 5 cut(s) 115, 183, 562, 775, 906
BspLI GGNNCC 3 cut(s) 52, 589, 714
BspPI GGATC 3 cut(s) 94, 802, 1026
BspQI GCTCTTC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 154
BspT107I GGYRCC 2 cut(s) 587, 712
BspTNI GGTCTC 2 cut(s) 373, 1015
BsrDI GCAATG 1 cut(s) 238
BsrFI RCCGGY 2 cut(s) 650, 860
BssAI RCCGGY 2 cut(s) 650, 860
BssECI CCNNGG 3 cut(s) 539, 662, 935
BssMI GATC 5 cut(s) 86, 111, 400, 794, 1031
BssNAI GTATAC 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 662
Bst1107I GTATAC 1 cut(s) 648
Bst4CI ACNGT 4 cut(s) 134, 540, 595, 972
Bst6I CTCTTC 2 cut(s) 68, 699
BstBAI YACGTR 1 cut(s) 450
BstBI TTCGAA 1 cut(s) 154
BstDEI CTNAG 5 cut(s) 123, 170, 570, 783, 893
BstDSI CCRYGG 3 cut(s) 539, 662, 935
BstF5I GGATG 3 cut(s) 182, 817, 885
BstKTI GATC 5 cut(s) 89, 114, 403, 797, 1034
BstMAI GTCTC 7 cut(s) 373, 501, 570, 696, 722, 988, 1015
BstMBI GATC 5 cut(s) 86, 111, 400, 794, 1031
BstNSI RCATGY 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 259, 281
BstX2I RGATCY 1 cut(s) 1031
BstYI RGATCY 1 cut(s) 1031
BstZ17I GTATAC 1 cut(s) 648
Bsu36I CCTNAGG 1 cut(s) 783
BsuRI GGCC 2 cut(s) 503, 661
BtgI CCRYGG 3 cut(s) 539, 662, 935
BtsCI GGATG 3 cut(s) 182, 817, 885
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 275
Cfr10I RCCGGY 2 cut(s) 650, 860
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 2 cut(s) 42, 279
CspAI ACCGGT 1 cut(s) 650
CspCI CAANNNNNGTGG 2 cut(s) 924, 959
CviAII CATG 5 cut(s) 115, 250, 383, 562, 663
CviQI GTAC 2 cut(s) 42, 279
DdeI CTNAG 5 cut(s) 123, 170, 570, 783, 893
DpnI GATC 5 cut(s) 88, 113, 402, 796, 1033
DpnII GATC 5 cut(s) 86, 111, 400, 794, 1031
EaeI YGGCCR 1 cut(s) 659
Eam1104I CTCTTC 2 cut(s) 68, 699
EarI CTCTTC 2 cut(s) 68, 699
EciI GGCGGA 1 cut(s) 894
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 2 cut(s) 373, 1015
Eco32I GATATC 1 cut(s) 912
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 49
Eco81I CCTNAGG 1 cut(s) 783
EcoICRI GAGCTC 1 cut(s) 61
EcoRI GAATTC 2 cut(s) 17, 156
EcoRV GATATC 1 cut(s) 912
EcoT14I CCWWGG 1 cut(s) 662
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 5 cut(s) 118, 253, 386, 565, 666
FaqI GGGAC 1 cut(s) 1028
FatI CATG 5 cut(s) 114, 249, 382, 561, 662
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 3 cut(s) 270, 273, 659
FokI GGATG 3 cut(s) 189, 804, 892
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 3 cut(s) 270, 273, 659
FspBI CTAG 1 cut(s) 608
GluI GCNGC 3 cut(s) 270, 273, 659
HaeIII GGCC 2 cut(s) 503, 661
HapII CCGG 6 cut(s) 8, 410, 504, 651, 831, 861
Hin1II CATG 5 cut(s) 118, 253, 386, 565, 666
HinfI GANTC 9 cut(s) 119, 323, 352, 373, 528, 572, 703, 721, 730
HpaII CCGG 6 cut(s) 8, 410, 504, 651, 831, 861
HphI GGTGA 1 cut(s) 1015
Hpy166II GTNNAC 2 cut(s) 247, 648
Hpy188III TCNNGA 6 cut(s) 22, 370, 569, 725, 774, 985
Hpy8I GTNNAC 2 cut(s) 247, 648
Hpy99I CGWCG 4 cut(s) 59, 86, 587, 860
HpyAV CCTTC 4 cut(s) 19, 431, 838, 940
HpyCH4III ACNGT 4 cut(s) 134, 540, 595, 972
HpyCH4IV ACGT 2 cut(s) 449, 551
HpyCH4V TGCA 6 cut(s) 193, 231, 269, 630, 746, 817
HpyF3I CTNAG 5 cut(s) 123, 170, 570, 783, 893
HpySE526I ACGT 2 cut(s) 449, 551
Hsp92II CATG 5 cut(s) 118, 253, 386, 565, 666
Kzo9I GATC 5 cut(s) 86, 111, 400, 794, 1031
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 259, 281
LweI GCATC 2 cut(s) 733, 826
MaeI CTAG 1 cut(s) 608
MaeII ACGT 2 cut(s) 449, 551
MaeIII GTNAC 1 cut(s) 618
MalI GATC 5 cut(s) 88, 113, 402, 796, 1033
MboI GATC 5 cut(s) 86, 111, 400, 794, 1031
MboII GAAGA 8 cut(s) 55, 121, 484, 652, 686, 843, 853, 1018
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 1 cut(s) 1031
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 7 cut(s) 17, 156, 194, 222, 289, 454, 941
MlyI GAGTC 4 cut(s) 113, 537, 581, 724
MmeI TCCRAC 4 cut(s) 144, 300, 503, 950
MnlI CCTC 8 cut(s) 167, 441, 778, 785, 864, 882, 912, 1026
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 4 cut(s) 333, 405, 687, 974
MslI CAYNNNNRTG 3 cut(s) 347, 381, 387
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 6 cut(s) 8, 410, 504, 651, 831, 861
MunI CAATTG 1 cut(s) 194
NcoI CCATGG 1 cut(s) 662
NdeII GATC 5 cut(s) 86, 111, 400, 794, 1031
NlaIII CATG 5 cut(s) 118, 253, 386, 565, 666
NlaIV GGNNCC 3 cut(s) 52, 589, 714
NmuCI GTSAC 1 cut(s) 618
NspI RCATGY 1 cut(s) 565
NspV TTCGAA 1 cut(s) 154
PciI ACATGT 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 591
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 5 cut(s) 323, 352, 373, 703, 721
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 3 cut(s) 271, 274, 660
PleI GAGTC 4 cut(s) 113, 536, 580, 724
PpsI GAGTC 4 cut(s) 113, 536, 580, 724
Ppu21I YACGTR 1 cut(s) 450
PscI ACATGT 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 52, 589, 714
PspPI GGNCC 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 1031
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 43, 280
RsaNI GTAC 2 cut(s) 42, 279
RseI CAYNNNNRTG 3 cut(s) 347, 381, 387
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 333, 405, 687, 974
SatI GCNGC 3 cut(s) 270, 273, 659
Sau3AI GATC 5 cut(s) 86, 111, 400, 794, 1031
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 4 cut(s) 113, 537, 581, 724
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 2 cut(s) 733, 826
SfcI CTRYAG 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 860
SmiMI CAYNNNNRTG 3 cut(s) 347, 381, 387
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
Sse9I AATT 7 cut(s) 17, 156, 194, 222, 289, 454, 941
SsiI CCGC 2 cut(s) 658, 905
SspMI CTAG 1 cut(s) 608
SstI GAGCTC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 4 cut(s) 134, 540, 595, 972
TaiI ACGT 2 cut(s) 452, 554
TaqI TCGA 7 cut(s) 57, 154, 371, 494, 531, 914, 986
TasI AATT 7 cut(s) 17, 156, 194, 222, 289, 454, 941
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 5 cut(s) 323, 352, 373, 703, 721
Tru1I TTAA 4 cut(s) 333, 405, 687, 974
Tru9I TTAA 4 cut(s) 333, 405, 687, 974
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 2 cut(s) 269, 272
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 4 cut(s) 283, 365, 383, 549
TspGWI ACGGA 5 cut(s) 43, 99, 810, 844, 952
TspRI CASTG 1 cut(s) 111
XapI RAATTY 2 cut(s) 17, 156
XceI RCATGY 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.