Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012818

Physical Location & Seq

Genomic Coordinates Reverse (-)

17530960 .. 17532689

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42005.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGTTTGGAGGAACAAGGAAGGGCGAGAGAAGACACACCTCTTCTTGGTAAAGGAAGACCATTGTCGAGCAAGTTCAAGACTTTCGCTAATGTCTTCATTGCTATCGTTGGTGCTGGTGTCCTTGGTCTTCCTTACGCCTTCAAACGAACCGGATGGCTCATGGGTTTGCTTACGCTCTTTTCCGTCGCTGCTTTGATCAACCATTGCATGATGCTTCTTGTTCATATCCGTCGCAAGCTTGGTGTCTCCAATATCGGATCTTTTGGGGACCTTGGTTTCGCTGCCTGCGGCAATCTCGGGAGGTTCGTCGTCGACATTCTTATTATTTTGTCTCAGGCTGGGTTTTGTGTTGGATACCTTATCTTCATCGGTAATACTTTAGCTAATCTCTCTAAGCCAACCAAGAGTACGACTTTGATGAGTCTGAGGCATTTAATGGGTGTGTCTCCTAAGAGTCTCTACATATGGGGATGTTTTCCGTTTCAGCTGGGTTTGAATTCTATTAAGACACTCACTCACTTGGCTCCTCTGAGCATATTTGCTGATGTGGTCGATTTGGGTGCAATGGCGGTGGTGATTGTGGAGGACATCAAGATTACGGTGGTGCAAAGGCCTCAAGTTGTCGCCTTTGGTGGCATGTCTGTGTTCTTCTATGGTATGGGAGTGGCTGTTTACGCCTTTGAAGGGGTTGGAATGGTTTTGCCTCTTGAATCCGAGACTAAGGATAAGGACAAGTTTGGCAAAGTGTTGGCACTCAGCATGCTATTCATTGCAGTGATGTATGGATCTTTTGGTGTGTTAGGCTACATGGCTTTTGGGGATGATACAATGGATATAATCACAGCTAACTTAGGGGCAGGAGTGGTGAGCAGTCTTGTGCAGCTGGGGCTCTGTATCAACCTTTTCTTCACCTTTCCCTTGATGATGAACCCTGTGTTTGAGATTGTGGAGAGACGTTTCTGGAGTGGAATGTACTGCGTCTGGCTCAGATGGCTGCTCGTCTTGGCAGTGACTTTGGTGGCTCTCTTGGTGCCAAACTTTGCTGATTTTTTGTCATTGGTTGGCAGCAGCGTCTGTTGTGCGTTGGGCTTTGTGTTGCCTTCTTTGTTTCATCTGATGGTCTTCAAAGACGAAATGGAGTGGAAGCAACGAGCTTTAGACGTGGGGATCCTGCTGCTGGGTGTCATTCTTGGTGTCTCAGGTACTTGGAGTTCTCTGACTGAGATCTTCCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015318 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

413

Amino Acids

44.96

Weight (kDa)

8.07

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	24 - 406	1.5e-72	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42005 AT4G38250
fragaria_vesca	FvH4_2g16760
malus_domestica	MD10G1141500.v1.1
prunus_persica	Prupe.8G179700_v2.0.a1
pyrus_communis	pycom05g13360 pycom10g12110
rosa_chinensis	RchiOBHm_Chr6g0280881
rosa_laevigata	RLG00000013023
rosa_multiflora	Rmu_sc0004772.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187530
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248800 Rh6BG250500 Rh6BG250700 Rh6CG251500 Rh6DG243200
rosa_wichuraiana	Rw6G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1033
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	291, 572
AclWI	GGATC	4 cut(s)	268, 796, 1165, 1178
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	3 cut(s)	412, 977, 1207
AfiI	CCNNNNNNNGG	3 cut(s)	47, 687, 1180
AgsI	TTSAA	6 cut(s)	79, 145, 499, 686, 713, 1129
AjiI	CACGTC	1 cut(s)	1165
AluBI	AGCT	6 cut(s)	241, 386, 490, 848, 886, 1157
AluI	AGCT	6 cut(s)	241, 386, 490, 848, 886, 1157
Alw26I	GTCTC	7 cut(s)	253, 339, 453, 464, 713, 949, 1204
AlwI	GGATC	4 cut(s)	268, 796, 1165, 1178
AlwNI	CAGNNNCTG	1 cut(s)	1077
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	7 cut(s)	191, 284, 883, 997, 1068, 1071, 1177
ApoI	RAATTY	1 cut(s)	499
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	589, 880, 904
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	1170
BanI	GGYRCC	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	894
BbsI	GAAGAC	5 cut(s)	39, 64, 88, 122, 1117
BbvI	GCAGC	7 cut(s)	178, 271, 895, 984, 1080, 1083, 1164
BccI	CCATC	3 cut(s)	150, 987, 1114
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciVI	GTATCC	1 cut(s)	350
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	7 cut(s)	253, 339, 453, 464, 713, 949, 1204
BfuI	GTATCC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	1227
BisI	GCNGC	8 cut(s)	192, 285, 292, 884, 998, 1069, 1072, 1178
BlsI	GCNGC	8 cut(s)	193, 286, 293, 885, 999, 1070, 1073, 1179
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	1165
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	4 cut(s)	272, 528, 1035, 1172
BmsI	GCATC	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	64
BpiI	GAAGAC	5 cut(s)	39, 64, 88, 122, 1117
BpmI	CTGGAG	1 cut(s)	985
BpuEI	CTTGAG	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	124, 274
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 687, 1180
Bse3DI	GCAATG	4 cut(s)	99, 205, 573, 771
BseDI	CCNNGG	2 cut(s)	124, 274
BseGI	GGATG	3 cut(s)	161, 479, 829
BseLI	CCNNNNNNNGG	3 cut(s)	47, 687, 1180
BseMI	GCAATG	4 cut(s)	99, 205, 573, 771
BseMII	CTCAG	7 cut(s)	350, 419, 524, 772, 1003, 1215, 1215
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	7 cut(s)	178, 271, 895, 984, 1080, 1083, 1164
BseYI	CCCAGC	4 cut(s)	341, 490, 886, 1180
BsgI	GTGCAG	1 cut(s)	902
BshFI	GGCC	1 cut(s)	616
BshNI	GGYRCC	1 cut(s)	1033
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	47, 687, 1180
BsmAI	GTCTC	7 cut(s)	253, 339, 453, 464, 713, 949, 1204
BsmBI	CGTCTC	1 cut(s)	949
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	616
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	5 cut(s)	198, 260, 788, 1170, 1227
BspACI	CCGC	2 cut(s)	291, 572
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	7 cut(s)	349, 420, 525, 771, 1002, 1214, 1216
BspLI	GGNNCC	4 cut(s)	272, 528, 1035, 1172
BspPI	GGATC	4 cut(s)	268, 796, 1165, 1178
BspT107I	GGYRCC	1 cut(s)	1033
BsrDI	GCAATG	4 cut(s)	99, 205, 573, 771
BssECI	CCNNGG	2 cut(s)	124, 274
BssMI	GATC	5 cut(s)	198, 260, 788, 1170, 1227
BssT1I	CCWWGG	2 cut(s)	124, 274
Bst4CI	ACNGT	1 cut(s)	604
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	239, 289, 764
BstF5I	GGATG	3 cut(s)	161, 479, 829
BstKTI	GATC	5 cut(s)	201, 263, 791, 1173, 1230
BstMAI	GTCTC	7 cut(s)	253, 339, 453, 464, 713, 949, 1204
BstMBI	GATC	5 cut(s)	198, 260, 788, 1170, 1227
BstMWI	GCNNNNNNNGC	3 cut(s)	677, 889, 994
BstNSI	RCATGY	2 cut(s)	643, 766
BstPAI	GACNNNNGTC	1 cut(s)	64
BstV1I	GCAGC	7 cut(s)	178, 271, 895, 984, 1080, 1083, 1164
BstV2I	GAAGAC	5 cut(s)	39, 64, 88, 122, 1117
BstX2I	RGATCY	4 cut(s)	260, 788, 1170, 1227
BstYI	RGATCY	4 cut(s)	260, 788, 1170, 1227
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	616
BtrI	CACGTC	1 cut(s)	1165
BtsCI	GGATG	3 cut(s)	161, 479, 829
BtsI	GCAGTG	2 cut(s)	783, 1017
BtsIMutI	CAGTG	2 cut(s)	783, 1017
Cac8I	GCNNGC	3 cut(s)	239, 289, 764
CaiI	CAGNNNCTG	1 cut(s)	1077
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	2 cut(s)	970, 1063
Csp6I	GTAC	3 cut(s)	411, 976, 1206
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	5 cut(s)	163, 211, 640, 763, 811
CviQI	GTAC	3 cut(s)	411, 976, 1206
DpnI	GATC	5 cut(s)	200, 262, 790, 1172, 1229
DpnII	GATC	5 cut(s)	198, 260, 788, 1170, 1227
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	124, 274
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	894
Eco47I	GGWCC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	124, 274
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	2 cut(s)	124, 274
Esp3I	CGTCTC	1 cut(s)	949
FaeI	CATG	5 cut(s)	166, 214, 643, 766, 814
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	162, 210, 639, 762, 810
FauNDI	CATATG	1 cut(s)	467
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	8 cut(s)	192, 285, 292, 884, 998, 1069, 1072, 1178
FokI	GGATG	3 cut(s)	168, 486, 836
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	8 cut(s)	192, 285, 292, 884, 998, 1069, 1072, 1178
GluI	GCNGC	8 cut(s)	192, 285, 292, 884, 998, 1069, 1072, 1178
GsaI	CCCAGC	4 cut(s)	345, 494, 890, 1184
GsuI	CTGGAG	1 cut(s)	985
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	2 cut(s)	970, 1063
Hin1II	CATG	5 cut(s)	166, 214, 643, 766, 814
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	3 cut(s)	424, 457, 713
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	589, 880, 904
Hpy166II	GTNNAC	2 cut(s)	316, 676
Hpy188I	TCNGA	7 cut(s)	260, 429, 534, 718, 992, 1119, 1221
Hpy188III	TCNNGA	5 cut(s)	79, 301, 595, 710, 964
Hpy8I	GTNNAC	2 cut(s)	316, 676
Hpy99I	CGWCG	4 cut(s)	191, 237, 314, 317
HpyAV	CCTTC	4 cut(s)	15, 151, 680, 1113
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4IV	ACGT	2 cut(s)	958, 1164
HpyCH4V	TGCA	5 cut(s)	210, 566, 610, 776, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	677, 889, 994
HpySE526I	ACGT	2 cut(s)	958, 1164
Hsp92II	CATG	5 cut(s)	166, 214, 643, 766, 814
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	198, 260, 788, 1170, 1227
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	7 cut(s)	178, 271, 895, 984, 1080, 1083, 1164
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	2 cut(s)	958, 1164
MaeIII	GTNAC	1 cut(s)	1012
MalI	GATC	5 cut(s)	200, 262, 790, 1172, 1229
MboI	GATC	5 cut(s)	198, 260, 788, 1170, 1227
MflI	RGATCY	4 cut(s)	260, 788, 1170, 1227
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	1 cut(s)	499
MlyI	GAGTC	2 cut(s)	433, 466
MmeI	TCCRAC	2 cut(s)	334, 673
MnlI	CCTC	8 cut(s)	4, 51, 297, 423, 540, 580, 627, 717
MseI	TTAA	2 cut(s)	437, 507
MslI	CAYNNNNRTG	2 cut(s)	644, 776
MspA1I	CMGCKG	2 cut(s)	490, 886
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	677, 889, 994
NdeI	CATATG	1 cut(s)	467
NdeII	GATC	5 cut(s)	198, 260, 788, 1170, 1227
NlaIII	CATG	5 cut(s)	166, 214, 643, 766, 814
NlaIV	GGNNCC	4 cut(s)	272, 528, 1035, 1172
NmuCI	GTSAC	1 cut(s)	1012
NspI	RCATGY	2 cut(s)	643, 766
PaeI	GCATGC	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	713
PkrI	GCNGC	8 cut(s)	193, 286, 293, 885, 999, 1070, 1073, 1179
PleI	GAGTC	2 cut(s)	432, 465
PpsI	GAGTC	2 cut(s)	432, 465
PpuMI	RGGWCCY	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	271
PspFI	CCCAGC	4 cut(s)	341, 490, 886, 1180
PspN4I	GGNNCC	4 cut(s)	272, 528, 1035, 1172
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PsrI	GAACNNNNNNTAC	2 cut(s)	1198, 1230
PstNI	CAGNNNCTG	1 cut(s)	1077
PsuI	RGATCY	4 cut(s)	260, 788, 1170, 1227
PvuII	CAGCTG	2 cut(s)	490, 886
RsaI	GTAC	3 cut(s)	412, 977, 1207
RsaNI	GTAC	3 cut(s)	411, 976, 1206
RseI	CAYNNNNRTG	2 cut(s)	644, 776
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	437, 507
SatI	GCNGC	8 cut(s)	192, 285, 292, 884, 998, 1069, 1072, 1178
Sau3AI	GATC	5 cut(s)	198, 260, 788, 1170, 1227
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	2 cut(s)	433, 466
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	644, 776
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
SphI	GCATGC	1 cut(s)	766
Sse9I	AATT	1 cut(s)	499
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	2 cut(s)	291, 572
StuI	AGGCCT	1 cut(s)	616
StyI	CCWWGG	2 cut(s)	124, 274
TaaI	ACNGT	1 cut(s)	604
TaiI	ACGT	2 cut(s)	961, 1167
TaqI	TCGA	3 cut(s)	68, 315, 555
TasI	AATT	1 cut(s)	499
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	2 cut(s)	437, 507
Tru9I	TTAA	2 cut(s)	437, 507
TscAI	CASTG	2 cut(s)	783, 1017
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	7 cut(s)	191, 284, 883, 997, 1068, 1071, 1177
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	6 cut(s)	88, 215, 358, 760, 944, 1103
TspGWI	ACGGA	3 cut(s)	175, 221, 471
TspRI	CASTG	2 cut(s)	783, 1017
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	499
XceI	RCATGY	2 cut(s)	643, 766
XmiI	GTMKAC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.