Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012818

Physical Location & Seq

Genomic Coordinates Forward (+)

26921336 .. 26922491

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCCGTACTCGTTTAAACGCACCGGTTGGATCATGAGCCTCCTGACGCTCTTCTTCGTCGCGTTTCTGACCCACCATTGCATGATGCTGTTGGTCTACACGCGCCGGAAGCTCGAGTCTCCCGACGGGCCGACGAAGATTGCGTCGTTCGGGGATTTGGGCTTCAGCGTTTGTGGCTCTGCCGGGAGCCCCAACATAATGGGTCTGGCTCCCAAAAGCTTTTACATTTGGGGGTGTTTCCCGTTTCAATTAGGATTGAATTCCATTAAAACGCTTACCCATTTGGCCCCTTTGAGTATTTTTGCTGATGTGGTTGATCTTGGAGCAATGGGCGTGGTGATCATTGAGGATGTGTTGATTATGATCAGAGGGGTGGATTTCTCTTCATTGAAAACGTATGGGGATGTTTCTTTGTTCTTTTATGCCTTGGGTGTGTCTGTGTACTCATTTGAAGGGGTTGGGATGGTTTTGCCTTTGGAGTCGGAGGCCAAGGATAAGGGTAAGTTTGGGAGAGTCTTGGCTGTTACGATGGTGTTCATTGCTCTTTTGTATGGGAGCTTTGGAGCTTTCGGTTACTTTGCTTTCGGGGAACAGACTAAGGATTTGATCACGGCTAACCTTGGTAAAGGCGTGATTTCCACTCTAGTGAAGCTTGGTCTTGTGATCAATCTGTTCTTCACATTGCCTATAATGATGAACCCGGTTTATGAAATCGTGGAGAGGCGGCTGTGGGGTGGGAGATACTGCTTGTGGTTGAGATGGTTGCTCGTGTTGGCGGTGAGTTTGGTGGCTTTGTTGGTCCCCAACTTTGCTGATTTCATGGCTTTGGTTGGGAGTGGTGTGTGCTGTGTTCTGGGGTTTGTTGTGCCTACCTTGTTTCATCTCATGGTCTTCAAGGGGAGAGATGGGGTGGAAGCAATGGCTCTCAGACGTAAGCATTTTGGCAATAGGAATTACTCTTGGGATTTCAGGAACTTGGTTTGCTCTGCAAGAAATTTTTGCTGCCAAGGATGTTTGAGCAATGAGCCTCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015318 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

345

Amino Acids

38.2

Weight (kDa)

8.87

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 62	6.7e-10	Transmembrane amino acid transporter protein
Aa_trans	PF01490	79 - 299	1.2e-39	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42005 AT4G38250
fragaria_vesca	FvH4_2g16760
malus_domestica	MD10G1141500.v1.1
prunus_persica	Prupe.8G179700_v2.0.a1
pyrus_communis	pycom05g13360 pycom10g12110
rosa_chinensis	RchiOBHm_Chr6g0280881
rosa_laevigata	RLG00000013023
rosa_multiflora	Rmu_sc0004772.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187530
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248800 Rh6BG250500 Rh6BG250700 Rh6CG251500 Rh6DG243200
rosa_wichuraiana	Rw6G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	2 cut(s)	62, 103
AciI	CCGC	2 cut(s)	724, 776
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	259, 994
AcuI	CTGAAG	1 cut(s)	148
AfaI	GTAC	2 cut(s)	8, 443
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	248, 259, 391, 452, 895
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	5 cut(s)	112, 219, 558, 566, 652
AluI	AGCT	5 cut(s)	112, 219, 558, 566, 652
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	3 cut(s)	128, 285, 486
ApeKI	GCWGC	1 cut(s)	1002
ApoI	RAATTY	2 cut(s)	259, 994
ArsI	GACNNNNNNTTYG	4 cut(s)	128, 160, 586, 618
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	128, 286, 799
AsuC2I	CCSGG	2 cut(s)	184, 701
AsuHPI	GGTGA	2 cut(s)	349, 790
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	883
BbvI	GCAGC	1 cut(s)	989
BccI	CCATC	4 cut(s)	457, 523, 753, 899
BceAI	ACGGC	1 cut(s)	627
BclI	TGATCA	4 cut(s)	339, 363, 606, 663
BcnI	CCSGG	2 cut(s)	184, 701
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	644
BisI	GCNGC	2 cut(s)	725, 1003
BlsI	GCNGC	2 cut(s)	726, 1004
Bme1390I	CCNGG	2 cut(s)	184, 701
Bme18I	GGWCC	1 cut(s)	799
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	3 cut(s)	128, 286, 799
BmiI	GGNNCC	4 cut(s)	188, 210, 288, 801
BmrFI	CCNGG	2 cut(s)	184, 701
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	883
BpuMI	CCSGG	2 cut(s)	184, 701
BsaBI	GATNNNNATC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	426, 489, 619, 1006
BsaWI	WCCGGW	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
Bse3DI	GCAATG	6 cut(s)	76, 333, 537, 680, 924, 1027
Bse8I	GATNNNNATC	1 cut(s)	362
BseDI	CCNNGG	4 cut(s)	426, 489, 619, 1006
BseGI	GGATG	4 cut(s)	355, 409, 468, 1016
BseJI	GATNNNNATC	1 cut(s)	362
BseMI	GCAATG	6 cut(s)	76, 333, 537, 680, 924, 1027
BseMII	CTCAG	1 cut(s)	940
BseXI	GCAGC	1 cut(s)	989
Bsh1236I	CGCG	2 cut(s)	62, 103
BshFI	GGCC	3 cut(s)	130, 287, 488
BshTI	ACCGGT	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	24, 106, 183, 701
BslFI	GGGAC	1 cut(s)	785
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	785
BsnI	GGCC	3 cut(s)	130, 287, 488
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
BspACI	CCGC	2 cut(s)	724, 776
BspANI	GGCC	3 cut(s)	130, 287, 488
BspCNI	CTCAG	1 cut(s)	939
BspFNI	CGCG	2 cut(s)	62, 103
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	4 cut(s)	188, 210, 288, 801
BspPI	GGATC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	56
BsrDI	GCAATG	6 cut(s)	76, 333, 537, 680, 924, 1027
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	426, 489, 619, 1006
BssMI	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
BssSI	CACGAG	1 cut(s)	767
BssT1I	CCWWGG	4 cut(s)	426, 489, 619, 1006
Bst2BI	CACGAG	1 cut(s)	767
Bst6I	CTCTTC	2 cut(s)	56, 388
BstDEI	CTNAG	2 cut(s)	597, 926
BstF5I	GGATG	4 cut(s)	355, 409, 468, 1016
BstFNI	CGCG	2 cut(s)	62, 103
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	6 cut(s)	33, 319, 342, 366, 609, 666
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 174
BstSCI	CCNGG	2 cut(s)	182, 699
BstUI	CGCG	2 cut(s)	62, 103
BstV1I	GCAGC	1 cut(s)	989
BstV2I	GAAGAC	1 cut(s)	883
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	130, 287, 488
BtsCI	GGATG	4 cut(s)	355, 409, 468, 1016
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	3 cut(s)	128, 286, 799
CseI	GACGC	2 cut(s)	55, 132
Csp6I	GTAC	2 cut(s)	7, 442
CspAI	ACCGGT	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	4 cut(s)	34, 82, 820, 886
CviQI	GTAC	2 cut(s)	7, 442
DdeI	CTNAG	2 cut(s)	597, 926
DpnI	GATC	6 cut(s)	32, 318, 341, 365, 608, 665
DpnII	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	56, 388
EarI	CTCTTC	2 cut(s)	56, 388
Eco130I	CCWWGG	4 cut(s)	426, 489, 619, 1006
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	799
Eco57I	CTGAAG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	259
EcoT14I	CCWWGG	4 cut(s)	426, 489, 619, 1006
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	4 cut(s)	426, 489, 619, 1006
FaeI	CATG	4 cut(s)	37, 85, 823, 889
FaqI	GGGAC	1 cut(s)	785
FatI	CATG	4 cut(s)	33, 81, 819, 885
FbaI	TGATCA	4 cut(s)	339, 363, 606, 663
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	725, 1003
FokI	GGATG	4 cut(s)	362, 416, 475, 1023
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	725, 1003
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	725, 1003
HaeIII	GGCC	3 cut(s)	130, 287, 488
HapII	CCGG	4 cut(s)	24, 106, 183, 701
HgaI	GACGC	2 cut(s)	55, 132
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	37, 85, 823, 889
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	2 cut(s)	217, 650
HinfI	GANTC	3 cut(s)	116, 479, 513
HpaII	CCGG	4 cut(s)	24, 106, 183, 701
HphI	GGTGA	2 cut(s)	349, 790
Hpy166II	GTNNAC	2 cut(s)	97, 442
Hpy188I	TCNGA	4 cut(s)	69, 368, 484, 929
Hpy188III	TCNNGA	4 cut(s)	34, 43, 122, 970
Hpy8I	GTNNAC	2 cut(s)	97, 442
Hpy99I	CGWCG	4 cut(s)	62, 128, 136, 148
HpyAV	CCTTC	1 cut(s)	446
HpyCH4IV	ACGT	2 cut(s)	395, 931
HpyCH4V	TGCA	2 cut(s)	81, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 174
HpyF3I	CTNAG	2 cut(s)	597, 926
HpySE526I	ACGT	2 cut(s)	395, 931
Hsp92II	CATG	4 cut(s)	37, 85, 823, 889
HspAI	GCGC	1 cut(s)	103
Ksp22I	TGATCA	4 cut(s)	339, 363, 606, 663
Kzo9I	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	5 cut(s)	186, 214, 323, 555, 563
LpnPI	CCDG	8 cut(s)	37, 56, 119, 191, 196, 714, 839, 955
Lsp1109I	GCAGC	1 cut(s)	989
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	2 cut(s)	395, 931
MaeIII	GTNAC	2 cut(s)	523, 572
MalI	GATC	6 cut(s)	32, 318, 341, 365, 608, 665
MboI	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
MboII	GAAGA	6 cut(s)	43, 46, 148, 375, 667, 883
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	4 cut(s)	248, 259, 952, 994
MlyI	GAGTC	3 cut(s)	125, 488, 522
MmeI	TCCRAC	2 cut(s)	8, 462
MnlI	CCTC	6 cut(s)	50, 340, 362, 478, 714, 1038
MseI	TTAA	2 cut(s)	15, 267
MslI	CAYNNNNRTG	1 cut(s)	644
MspI	CCGG	4 cut(s)	24, 106, 183, 701
MspR9I	CCNGG	2 cut(s)	184, 701
MssI	GTTTAAAC	1 cut(s)	16
MvnI	CGCG	2 cut(s)	62, 103
MwoI	GCNNNNNNNGC	2 cut(s)	109, 174
NciI	CCSGG	2 cut(s)	184, 701
NdeII	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
NlaIII	CATG	4 cut(s)	37, 85, 823, 889
NlaIV	GGNNCC	4 cut(s)	188, 210, 288, 801
OliI	CACNNNNGTG	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 140
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	726, 1004
PleI	GAGTC	3 cut(s)	124, 487, 521
PmeI	GTTTAAAC	1 cut(s)	16
PpsI	GAGTC	3 cut(s)	124, 487, 521
PspN4I	GGNNCC	4 cut(s)	188, 210, 288, 801
PspPI	GGNCC	3 cut(s)	128, 286, 799
PspXI	VCTCGAGB	1 cut(s)	113
RsaI	GTAC	2 cut(s)	8, 443
RsaNI	GTAC	2 cut(s)	7, 442
RseI	CAYNNNNRTG	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	15, 267
SatI	GCNGC	2 cut(s)	725, 1003
Sau3AI	GATC	6 cut(s)	30, 316, 339, 363, 606, 663
Sau96I	GGNCC	3 cut(s)	128, 286, 799
SchI	GAGTC	3 cut(s)	125, 488, 522
ScrFI	CCNGG	2 cut(s)	184, 701
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	9 cut(s)	114, 221, 398, 560, 568, 621, 654, 875, 934
SfaNI	GCATC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	799
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	248, 259, 952, 994
SsiI	CCGC	2 cut(s)	724, 776
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	182, 699
StyI	CCWWGG	4 cut(s)	426, 489, 619, 1006
TaiI	ACGT	2 cut(s)	398, 934
TaqI	TCGA	1 cut(s)	114
TasI	AATT	4 cut(s)	248, 259, 952, 994
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	727
Tru1I	TTAA	2 cut(s)	15, 267
Tru9I	TTAA	2 cut(s)	15, 267
TseI	GCWGC	1 cut(s)	1002
TspDTI	ATGAA	6 cut(s)	375, 526, 710, 723, 808, 869
VpaK11BI	GGWCC	1 cut(s)	799
XapI	RAATTY	2 cut(s)	259, 994
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.