MD10G1141500.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
22742842 .. 22744125
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1141500.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGGGTGGCGACAAGGAGGCAACCTCCTCGTCCCAGCGTCTCAGGCAGCCGCCCCTGACGGAGAACACGCCGCTGATCGGAGACCCCAAGCCGCTGTCGTCCCAATCCAAGACCTTCGCCAACGTCTTTATCGCCGTCGTCGGAGCCGGCGTTCTTGGCCTCCCGTATTCCTTCAAGCGCACCGGGTGGCTCATGAGCCTCCTCACGCTCCTACTCGTTGCGTTCCTCACCCACCATTGCATGATGCTGATTGTTTATACCAGAAGAAAGCTCGAGTCTTCCAATGGGTTCACAAAGATCCCGTCTTTTGGGGATTTGGGTTTCGCCGTCTGCGGCGTTTGGGGGCGCTTGCTGGTGGATGTTCTGATCATTCTCGCTCAGGCCGGGTTCTGCGTCGGGTATCTCATTTTCATCGGCAATACTTTAGCACATTTGCTCAATGCACCCACAGCATCCGATTTGACACCCCAGATTTTGGGATTGGCACCCAAAAGCTTCTACATTTGGGGGTGTTTTCCCTTCCAATTGGGGTTGAATTCGATTGCAACACTGACCCATTTGGCCCCGTTGAGTATTTTTGCTGATGTGATTGATCTCGGAGCAATGGGGGTTGTGATGGTGGAGGATGTGGTGGTTATGTTGAAAAAAATGCCGGAAGTGAAGGCATTTGGAGACCTTTCTCTGTTCTTTTACGGACTAGGCGTGGCGGTGTACTCCTTCGAAGGGGTTGGGATGGTTCTGCCATTGGAGTCCGAGGCGAAAGACAAGGACAAGTTTGGGAAGGTTCTGGCTTGGACAATGACATTCATTTCTCTCATGTATGGAAGCTTTGGAGCTCTTGGTTATTTTGCATTTGGGGACCAAACCAAGGATATGATCACGGCTAATTACGGTGCAGGATTGATTAGTACCCTGGTGAAGCTTGGCCTTGTGGTGAATCTGTTCTTCACATTGCCTATTATGATGAACCCGGTGTATGAGATTGTCGAAAGGCGGTTTTGGGGAGGGAGGTATTGCTTGTGGATGAGATGGGTGCTGGTTTTGGCAGTGATATTGGTGGCATTGTTGGTCCCCAATTTCGCGGATTTCATGTCGTTGGTGGGGAGTGGTGTGTGCTGTGCATTAGGGTTTGTGGTGCCGACTCTGTTTCATCTGATCGTGTTCAAGAGTGAGATGGGGTGGGGGCAATGGTGCTCTGATGTGAGCATTTTGGTGTTGGGAGTTGTTCTTGCGGTTTCAGGAACTTGGTCTGCTCTCCAGGAGATATTTGCTGCCAAAGTATAG

Protein Analysis

428

Amino Acids

46.46

Weight (kDa)

7.54

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 34 - 418 1.5e-71 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42005 AT4G38250
fragaria_vesca FvH4_2g16760
malus_domestica MD10G1141500.v1.1
prunus_persica Prupe.8G179700_v2.0.a1
pyrus_communis pycom05g13360 pycom10g12110
rosa_chinensis RchiOBHm_Chr6g0280881
rosa_laevigata RLG00000013023
rosa_multiflora Rmu_sc0004772.1_g000003
rosa_roxburghii Rroxscaffold_7G00187530
rosa_rugosa Rorug06G0136000
rosa_samantha Rh6AG248800 Rh6BG250500 Rh6BG250700 Rh6CG251500 Rh6DG243200
rosa_wichuraiana Rw6G021510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 484, 1135
AccB7I CCANNNNNTGG 1 cut(s) 475
AccII CGCG 1 cut(s) 1082
AciI CCGC 8 cut(s) 50, 71, 92, 333, 707, 994, 1082, 1232
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 535
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 2 cut(s) 713, 910
AfiI CCNNNNNNNGG 5 cut(s) 77, 308, 475, 723, 868
AgsI TTSAA 4 cut(s) 175, 535, 643, 1165
AjnI CCWGG 2 cut(s) 912, 1257
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 5 cut(s) 271, 495, 828, 836, 922
AluI AGCT 5 cut(s) 271, 495, 828, 836, 922
Alw21I GWGCWC 2 cut(s) 838, 1196
Alw26I GTCTC 3 cut(s) 44, 75, 666
AlwI GGATC 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 4 cut(s) 157, 381, 561, 925
ApeKI GCWGC 2 cut(s) 46, 1271
ApoI RAATTY 1 cut(s) 535
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 1 cut(s) 941
AspLEI GCGC 2 cut(s) 180, 348
AspS9I GGNCC 3 cut(s) 562, 859, 1069
AsuC2I CCSGG 3 cut(s) 184, 385, 971
AsuHPI GGTGA 3 cut(s) 220, 928, 946
AsuII TTCGAA 1 cut(s) 720
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 859, 1069
BanI GGYRCC 2 cut(s) 484, 1135
BanII GRGCYC 1 cut(s) 838
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 2 cut(s) 838, 1196
BbvI GCAGC 2 cut(s) 58, 1258
BccI CCATC 4 cut(s) 610, 727, 1023, 1168
BceAI ACGGC 3 cut(s) 119, 311, 897
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BciT130I CCWGG 2 cut(s) 914, 1259
BclI TGATCA 2 cut(s) 366, 876
BcnI CCSGG 3 cut(s) 184, 385, 971
BcoDI GTCTC 3 cut(s) 44, 75, 666
BfaI CTAG 1 cut(s) 698
BfoI RGCGCY 1 cut(s) 349
BisI GCNGC 6 cut(s) 47, 50, 71, 92, 334, 1272
BlsI GCNGC 6 cut(s) 48, 51, 72, 93, 335, 1273
Bme1390I CCNGG 5 cut(s) 184, 385, 914, 971, 1259
Bme18I GGWCC 2 cut(s) 859, 1069
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 562, 859, 1069
BmiI GGNNCC 6 cut(s) 145, 486, 564, 860, 1071, 1137
BmrFI CCNGG 5 cut(s) 184, 385, 914, 971, 1259
BmsI GCATC 2 cut(s) 234, 461
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpmI CTGGAG 1 cut(s) 1241
Bpu10I CCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 720
BpuMI CCSGG 3 cut(s) 184, 385, 971
BsaI GGTCTC 2 cut(s) 75, 666
BsaJI CCNNGG 3 cut(s) 753, 867, 912
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 308, 475, 723, 868
Bse118I RCCGGY 1 cut(s) 146
Bse3DI GCAATG 4 cut(s) 235, 609, 950, 1193
BseBI CCWGG 2 cut(s) 914, 1259
BseDI CCNNGG 3 cut(s) 753, 867, 912
BseGI GGATG 5 cut(s) 364, 452, 631, 738, 1029
BseLI CCNNNNNNNGG 5 cut(s) 77, 308, 475, 723, 868
BseMI GCAATG 4 cut(s) 235, 609, 950, 1193
BseMII CTCAG 2 cut(s) 55, 392
BseRI GAGGAG 2 cut(s) 16, 191
BseXI GCAGC 2 cut(s) 58, 1258
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 1 cut(s) 1082
BshFI GGCC 4 cut(s) 159, 383, 563, 927
BshNI GGYRCC 2 cut(s) 484, 1135
BsiHKAI GWGCWC 2 cut(s) 838, 1196
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 5 cut(s) 147, 183, 384, 653, 971
BslFI GGGAC 4 cut(s) 16, 85, 872, 1055
BslI CCNNNNNNNGG 5 cut(s) 77, 308, 475, 723, 868
BsmAI GTCTC 3 cut(s) 44, 75, 666
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 4 cut(s) 16, 85, 872, 1055
BsnI GGCC 4 cut(s) 159, 383, 563, 927
Bso31I GGTCTC 2 cut(s) 75, 666
BsoBI CYCGRG 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 2 cut(s) 838, 1196
Bsp143I GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
BspACI CCGC 8 cut(s) 50, 71, 92, 333, 707, 994, 1082, 1232
BspANI GGCC 4 cut(s) 159, 383, 563, 927
BspCNI CTCAG 2 cut(s) 54, 391
BspFNI CGCG 1 cut(s) 1082
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 6 cut(s) 145, 486, 564, 860, 1071, 1137
BspPI GGATC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 720
BspT107I GGYRCC 2 cut(s) 484, 1135
BspTNI GGTCTC 2 cut(s) 75, 666
BsrDI GCAATG 4 cut(s) 235, 609, 950, 1193
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 753, 867, 912
BssMI GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
BssT1I CCWWGG 1 cut(s) 867
Bst2UI CCWGG 2 cut(s) 914, 1259
Bst4CI ACNGT 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 2 cut(s) 148, 350
BstDEI CTNAG 2 cut(s) 41, 378
BstF5I GGATG 5 cut(s) 364, 452, 631, 738, 1029
BstFNI CGCG 1 cut(s) 1082
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 180, 348
BstKTI GATC 6 cut(s) 78, 300, 369, 595, 879, 1158
BstMAI GTCTC 3 cut(s) 44, 75, 666
BstMBI GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
BstMWI GCNNNNNNNGC 3 cut(s) 43, 156, 449
BstNI CCWGG 2 cut(s) 914, 1259
BstSCI CCNGG 5 cut(s) 182, 383, 912, 969, 1257
BstUI CGCG 1 cut(s) 1082
BstV1I GCAGC 2 cut(s) 58, 1258
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuRI GGCC 4 cut(s) 159, 383, 563, 927
BtsCI GGATG 5 cut(s) 364, 452, 631, 738, 1029
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 2 cut(s) 548, 1053
Cac8I GCNNGC 2 cut(s) 148, 350
CciI TCATGA 1 cut(s) 192
CfoI GCGC 2 cut(s) 180, 348
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 562, 859, 1069
CseI GACGC 2 cut(s) 26, 382
Csp6I GTAC 2 cut(s) 712, 909
CviAII CATG 4 cut(s) 193, 241, 817, 1090
CviQI GTAC 2 cut(s) 712, 909
DdeI CTNAG 2 cut(s) 41, 378
DpnI GATC 6 cut(s) 77, 299, 368, 594, 878, 1157
DpnII GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
DraIII CACNNNGTG 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 836
Eco130I CCWWGG 1 cut(s) 867
Eco24I GRGCYC 1 cut(s) 838
Eco31I GGTCTC 2 cut(s) 75, 666
Eco47I GGWCC 2 cut(s) 859, 1069
Eco53kI GAGCTC 1 cut(s) 836
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 836
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 912, 1257
EcoT14I CCWWGG 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 867
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 4 cut(s) 196, 244, 820, 1093
FaqI GGGAC 4 cut(s) 16, 85, 872, 1055
FatI CATG 4 cut(s) 192, 240, 816, 1089
FbaI TGATCA 2 cut(s) 366, 876
Fnu4HI GCNGC 6 cut(s) 47, 50, 71, 92, 334, 1272
FokI GGATG 5 cut(s) 371, 439, 638, 745, 1036
FriOI GRGCYC 1 cut(s) 838
Fsp4HI GCNGC 6 cut(s) 47, 50, 71, 92, 334, 1272
FspBI CTAG 1 cut(s) 698
GlaI GCGC 2 cut(s) 179, 347
GluI GCNGC 6 cut(s) 47, 50, 71, 92, 334, 1272
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 1241
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 4 cut(s) 159, 383, 563, 927
HapII CCGG 5 cut(s) 147, 183, 384, 653, 971
HgaI GACGC 2 cut(s) 26, 382
HhaI GCGC 2 cut(s) 180, 348
Hin1II CATG 4 cut(s) 196, 244, 820, 1093
Hin6I GCGC 2 cut(s) 178, 346
HinP1I GCGC 2 cut(s) 178, 346
HindIII AAGCTT 3 cut(s) 493, 826, 920
HinfI GANTC 4 cut(s) 275, 749, 937, 1141
HpaII CCGG 5 cut(s) 147, 183, 384, 653, 971
HphI GGTGA 3 cut(s) 220, 928, 946
Hpy166II GTNNAC 2 cut(s) 291, 712
Hpy188I TCNGA 8 cut(s) 80, 143, 366, 457, 599, 754, 1155, 1198
Hpy188III TCNNGA 3 cut(s) 193, 1165, 1239
Hpy8I GTNNAC 2 cut(s) 291, 712
Hpy99I CGWCG 3 cut(s) 140, 143, 398
HpyAV CCTTC 7 cut(s) 124, 181, 529, 655, 716, 727, 775
HpyCH4III ACNGT 1 cut(s) 893
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 6 cut(s) 240, 443, 545, 851, 896, 1121
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 156, 449
HpyF3I CTNAG 2 cut(s) 41, 378
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 4 cut(s) 196, 244, 820, 1093
HspAI GCGC 2 cut(s) 178, 346
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 2 cut(s) 366, 876
Kzo9I GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
LmnI GCTCC 4 cut(s) 143, 213, 599, 833
Lsp1109I GCAGC 2 cut(s) 58, 1258
LweI GCATC 2 cut(s) 234, 461
MaeI CTAG 1 cut(s) 698
MaeII ACGT 1 cut(s) 123
MalI GATC 6 cut(s) 77, 299, 368, 594, 878, 1157
MboI GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
MboII GAAGA 3 cut(s) 270, 276, 937
MfeI CAATTG 1 cut(s) 524
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 2 cut(s) 838, 1196
MluCI AATT 4 cut(s) 524, 535, 886, 1075
MlyI GAGTC 3 cut(s) 284, 758, 1135
MmeI TCCRAC 1 cut(s) 121
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 941
MslI CAYNNNNRTG 1 cut(s) 1211
MspA1I CMGCKG 2 cut(s) 73, 94
MspI CCGG 5 cut(s) 147, 183, 384, 653, 971
MspR9I CCNGG 5 cut(s) 184, 385, 914, 971, 1259
MunI CAATTG 1 cut(s) 524
MvaI CCWGG 2 cut(s) 914, 1259
MvnI CGCG 1 cut(s) 1082
MwoI GCNNNNNNNGC 3 cut(s) 43, 156, 449
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 3 cut(s) 184, 385, 971
NdeII GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 4 cut(s) 196, 244, 820, 1093
NlaIV GGNNCC 6 cut(s) 145, 486, 564, 860, 1071, 1137
NspV TTCGAA 1 cut(s) 720
PaeR7I CTCGAG 1 cut(s) 272
PagI TCATGA 1 cut(s) 192
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 699
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 941
PfeI GAWTC 1 cut(s) 937
PflMI CCANNNNNTGG 1 cut(s) 475
PfoI TCCNGGA 1 cut(s) 1257
PkrI GCNGC 6 cut(s) 48, 51, 72, 93, 335, 1273
PleI GAGTC 3 cut(s) 283, 757, 1135
PpsI GAGTC 3 cut(s) 283, 757, 1135
Psp124BI GAGCTC 1 cut(s) 838
Psp6I CCWGG 2 cut(s) 912, 1257
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 2 cut(s) 912, 1257
PspN4I GGNNCC 6 cut(s) 145, 486, 564, 860, 1071, 1137
PspPI GGNCC 3 cut(s) 562, 859, 1069
PspXI VCTCGAGB 1 cut(s) 272
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 713, 910
RsaNI GTAC 2 cut(s) 712, 909
RseI CAYNNNNRTG 1 cut(s) 1211
SacI GAGCTC 1 cut(s) 838
SatI GCNGC 6 cut(s) 47, 50, 71, 92, 334, 1272
Sau3AI GATC 6 cut(s) 75, 297, 366, 592, 876, 1155
Sau96I GGNCC 3 cut(s) 562, 859, 1069
SchI GAGTC 3 cut(s) 284, 758, 1135
ScrFI CCNGG 5 cut(s) 184, 385, 914, 971, 1259
SduI GDGCHC 2 cut(s) 838, 1196
SfaNI GCATC 2 cut(s) 234, 461
Sfr274I CTCGAG 1 cut(s) 272
SfuI TTCGAA 1 cut(s) 720
SinI GGWCC 2 cut(s) 859, 1069
SlaI CTCGAG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 1211
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 524, 535, 886, 1075
SsiI CCGC 8 cut(s) 50, 71, 92, 333, 707, 994, 1082, 1232
SspMI CTAG 1 cut(s) 698
SstI GAGCTC 1 cut(s) 838
StyD4I CCNGG 5 cut(s) 182, 383, 912, 969, 1257
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 1 cut(s) 893
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 273, 539, 720, 987
TasI AATT 4 cut(s) 524, 535, 886, 1075
TatI WGTACW 1 cut(s) 711
TauI GCSGC 4 cut(s) 52, 73, 94, 336
TfiI GAWTC 1 cut(s) 937
TscAI CASTG 2 cut(s) 555, 1053
TseI GCWGC 2 cut(s) 46, 1271
TspDTI ATGAA 5 cut(s) 400, 796, 980, 1078, 1139
TspGWI ACGGA 2 cut(s) 74, 708
TspRI CASTG 2 cut(s) 555, 1053
Van91I CCANNNNNTGG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 859, 1069
XapI RAATTY 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 941
XspI CTAG 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.