Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012818

Physical Location & Seq

Genomic Coordinates Reverse (-)

14603098 .. 14604387

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGTGTTCGAAAAAGAAGCAAACTCGTCATCCAAACGCCTCCGATCACCGCCGGCGACGGAGGAGACGCCGCTGCTCGGAGCCCCAAAGCCGCAGTCGTCCCAATCCAAGACGTTCGCCAATGTCTTCATCGCCATCGTCGGCGCCGGCGTTCTGGGTATGCCGTACTCGTTTAAACGCACCGGTTGGGTCATGAGCCTGCTGACCTTGTTCTTCGTCGCGTTTCTGACCCACCATTGCATGATGCTGTTGGTCTACACGCGCCGGAAGCTCGAGTCTTCCGACGCGGCGACCAAGATCCCGTCGTTTGGGGATTTGGGATTCAGCGTTTGTGGCTCTACGGGGAGGTTAGTGGTTGATGTTCTCATCATTCTTGCCCAGACTGGTTTTTGCGTTGGTTATCTTCTTTTTATTGGTAATACAATGACCCATTTGATCAATCCTGTAACTTCGACTGATTTGAGCCCAAAAATAATGGGGTTGGCTCCCAAAAGCTTTTACATTTGGGGTTGTTTCCCGTTCCAACTAGGATTGAATTCGATAAAGACGCTGACCCATATGGCTCCTTTGAGTATTTTTGCTGATGTGGTTGATCTTGGAGCAATGGGTGTGGTGATCATTGAGGATTTGATGATCATGATGAAAGGGGTGGATTTTGGTGGGTTGAAAAGTTTTGGGGATGTTTCTTTGTTCTTTTATGCATTGGGTGTGTCTGTGTACTCGTTTGAAGGGGTTGGGATGGTTTTGCCTTTGGAGTCGGAGGCGAAAGATAAGGACAAGTTTGGGAGGGTGTTGGGTTTCACAATGTTGTTCATTGCTTTGATGTATGGATGCTTTGGAGCATTCGGTTACTTTGCTTTCGGGGAACAGACTAAGGACTTGATCACGGCTAACCTTGGGAAAGGCGTGATTTCCACTCTGGTGAAGCTTGGTCTTGTGATCAATCTGTTCTTCACATTGCCTATAATGATGAACCCGGTTTATGAAATCGTGGAGAGGCGGCTGTGGGGTGGGAGGTTCTGCTTGTGGTTGAGGTGGCTGCTCGTGTTGGTGGTGTGTTTGGTGGCTTTGTTGGTCCCCAACTTTGCTGATTTCATGGCTTTGGTTGGGAGTGGTGTATGCTGTGTTCTGGGGTTTGTTTTGCCTAGTTTGTTTCATCTCTTGGTCTTCAAGGGTGAGATGGGGTGGAAGCAATGGCTCTCAGATGTAAGCATTTTGGCATTGGGAATTGTTCTTGGGATTTCGGGGACATGGTTTGCTCTGCAAGAAATTTTCGCTTCCAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015318 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

430

Amino Acids

46.94

Weight (kDa)

8.49

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	33 - 421	1.4e-73	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42005 AT4G38250
fragaria_vesca	FvH4_2g16760
malus_domestica	MD10G1141500.v1.1
prunus_persica	Prupe.8G179700_v2.0.a1
pyrus_communis	pycom05g13360 pycom10g12110
rosa_chinensis	RchiOBHm_Chr6g0280881
rosa_laevigata	RLG00000013023
rosa_multiflora	Rmu_sc0004772.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187530
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248800 Rh6BG250500 Rh6BG250700 Rh6CG251500 Rh6DG243200
rosa_wichuraiana	Rw6G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	3 cut(s)	221, 262, 287
AciI	CCGC	5 cut(s)	50, 71, 92, 287, 1000
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	535, 1269
AcyI	GRCGYC	2 cut(s)	68, 144
AfaI	GTAC	2 cut(s)	167, 719
AfiI	CCNNNNNNNGG	2 cut(s)	77, 308
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	535, 667, 728, 1171
AleI	CACNNNNGTG	1 cut(s)	920
AluBI	AGCT	3 cut(s)	271, 495, 928
AluI	AGCT	3 cut(s)	271, 495, 928
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	73, 1039
ApoI	RAATTY	2 cut(s)	535, 1269
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	146, 264
AspS9I	GGNCC	1 cut(s)	1075
AsuC2I	CCSGG	1 cut(s)	977
AsuHPI	GGTGA	4 cut(s)	39, 625, 934, 1187
AsuII	TTCGAA	1 cut(s)	9
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	1075
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	85, 467
BauI	CACGAG	1 cut(s)	1043
BbsI	GAAGAC	3 cut(s)	118, 270, 1159
BbvI	GCAGC	2 cut(s)	60, 1026
BccI	CCATC	3 cut(s)	143, 733, 1174
BceAI	ACGGC	2 cut(s)	148, 903
BclI	TGATCA	5 cut(s)	435, 615, 633, 882, 939
BcnI	CCSGG	1 cut(s)	977
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	527, 1146
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	6 cut(s)	71, 74, 92, 288, 1001, 1040
BlsI	GCNGC	6 cut(s)	72, 75, 93, 289, 1002, 1041
Bme1390I	CCNGG	1 cut(s)	977
Bme18I	GGWCC	1 cut(s)	1075
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	1075
BmiI	GGNNCC	5 cut(s)	82, 145, 486, 564, 1077
BmrFI	CCNGG	1 cut(s)	977
BmsI	GCATC	2 cut(s)	234, 821
BpiI	GAAGAC	3 cut(s)	118, 270, 1159
Bpu14I	TTCGAA	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	977
BsaHI	GRCGYC	2 cut(s)	68, 144
BsaJI	CCNNGG	1 cut(s)	895
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 308
Bse118I	RCCGGY	3 cut(s)	52, 146, 182
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	5 cut(s)	235, 609, 813, 956, 1199
BseDI	CCNNGG	1 cut(s)	895
BseGI	GGATG	4 cut(s)	29, 685, 744, 836
BseLI	CCNNNNNNNGG	2 cut(s)	77, 308
BseMI	GCAATG	5 cut(s)	235, 609, 813, 956, 1199
BseMII	CTCAG	1 cut(s)	1215
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	60, 1026
Bsh1236I	CGCG	3 cut(s)	221, 262, 287
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	5 cut(s)	53, 147, 183, 265, 977
BslFI	GGGAC	3 cut(s)	85, 1061, 1261
BslI	CCNNNNNNNGG	2 cut(s)	77, 308
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	3 cut(s)	85, 1061, 1261
BsmI	GAATGC	1 cut(s)	842
BsoBI	CYCGRG	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	85, 467
Bsp143I	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
BspACI	CCGC	5 cut(s)	50, 71, 92, 287, 1000
BspCNI	CTCAG	1 cut(s)	1214
BspFNI	CGCG	3 cut(s)	221, 262, 287
BspHI	TCATGA	2 cut(s)	192, 636
BspLI	GGNNCC	5 cut(s)	82, 145, 486, 564, 1077
BspPI	GGATC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	5 cut(s)	235, 609, 813, 956, 1199
BsrFI	RCCGGY	3 cut(s)	52, 146, 182
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	3 cut(s)	52, 146, 182
BssECI	CCNNGG	1 cut(s)	895
BssMI	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
BssNI	GRCGYC	2 cut(s)	68, 144
BssSI	CACGAG	1 cut(s)	1043
BssT1I	CCWWGG	1 cut(s)	895
Bst2BI	CACGAG	1 cut(s)	1043
BstACI	GRCGYC	2 cut(s)	68, 144
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	54, 148, 200
BstDEI	CTNAG	2 cut(s)	873, 1201
BstF5I	GGATG	4 cut(s)	29, 685, 744, 836
BstFNI	CGCG	3 cut(s)	221, 262, 287
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 264
BstKTI	GATC	8 cut(s)	47, 300, 438, 595, 618, 636, 885, 942
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 333
BstSCI	CCNGG	1 cut(s)	975
BstUI	CGCG	3 cut(s)	221, 262, 287
BstV1I	GCAGC	2 cut(s)	60, 1026
BstV2I	GAAGAC	3 cut(s)	118, 270, 1159
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	4 cut(s)	29, 685, 744, 836
Cac8I	GCNNGC	3 cut(s)	54, 148, 200
CciI	TCATGA	2 cut(s)	192, 636
CfoI	GCGC	2 cut(s)	146, 264
Cfr10I	RCCGGY	3 cut(s)	52, 146, 182
Cfr13I	GGNCC	1 cut(s)	1075
CseI	GACGC	3 cut(s)	76, 293, 556
Csp6I	GTAC	2 cut(s)	166, 718
CspAI	ACCGGT	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	5 cut(s)	193, 241, 637, 1096, 1251
CviQI	GTAC	2 cut(s)	166, 718
DdeI	CTNAG	2 cut(s)	873, 1201
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	8 cut(s)	46, 299, 437, 594, 617, 635, 884, 941
DpnII	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
DraI	TTTAAA	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	895
Eco24I	GRGCYC	2 cut(s)	85, 467
Eco47I	GGWCC	1 cut(s)	1075
Eco88I	CYCGRG	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	895
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	85, 467
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	895
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	5 cut(s)	196, 244, 640, 1099, 1254
FaqI	GGGAC	3 cut(s)	85, 1061, 1261
FatI	CATG	5 cut(s)	192, 240, 636, 1095, 1250
FauNDI	CATATG	1 cut(s)	558
FbaI	TGATCA	5 cut(s)	435, 615, 633, 882, 939
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	6 cut(s)	71, 74, 92, 288, 1001, 1040
FokI	GGATG	4 cut(s)	16, 692, 751, 843
FriOI	GRGCYC	2 cut(s)	85, 467
Fsp4HI	GCNGC	6 cut(s)	71, 74, 92, 288, 1001, 1040
FspBI	CTAG	2 cut(s)	527, 1146
GlaI	GCGC	2 cut(s)	145, 263
GluI	GCNGC	6 cut(s)	71, 74, 92, 288, 1001, 1040
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	5 cut(s)	53, 147, 183, 265, 977
HgaI	GACGC	3 cut(s)	76, 293, 556
HhaI	GCGC	2 cut(s)	146, 264
Hin1I	GRCGYC	2 cut(s)	68, 144
Hin1II	CATG	5 cut(s)	196, 244, 640, 1099, 1254
Hin6I	GCGC	2 cut(s)	144, 262
HinP1I	GCGC	2 cut(s)	144, 262
HindIII	AAGCTT	2 cut(s)	493, 926
HinfI	GANTC	3 cut(s)	275, 321, 755
HpaII	CCGG	5 cut(s)	53, 147, 183, 265, 977
HphI	GGTGA	4 cut(s)	39, 625, 934, 1187
Hpy166II	GTNNAC	2 cut(s)	256, 718
Hpy188I	TCNGA	6 cut(s)	44, 80, 228, 283, 760, 1204
Hpy188III	TCNNGA	2 cut(s)	193, 637
Hpy8I	GTNNAC	2 cut(s)	256, 718
Hpy99I	CGWCG	5 cut(s)	61, 143, 221, 287, 307
HpyAV	CCTTC	1 cut(s)	722
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	240, 701, 1264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 333
HpyF3I	CTNAG	2 cut(s)	873, 1201
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	2 cut(s)	68, 144
Hsp92II	CATG	5 cut(s)	196, 244, 640, 1099, 1254
HspAI	GCGC	2 cut(s)	144, 262
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	52, 146
KroNI	GCCGGC	2 cut(s)	54, 148
Ksp22I	TGATCA	5 cut(s)	435, 615, 633, 882, 939
Kzo9I	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
LmnI	GCTCC	5 cut(s)	80, 490, 568, 599, 839
Lsp1109I	GCAGC	2 cut(s)	60, 1026
LweI	GCATC	2 cut(s)	234, 821
MaeI	CTAG	2 cut(s)	527, 1146
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	445, 848
MalI	GATC	8 cut(s)	46, 299, 437, 594, 617, 635, 884, 941
MboI	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
MboII	GAAGA	6 cut(s)	118, 205, 270, 395, 943, 1159
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	85, 467
MluCI	AATT	3 cut(s)	535, 1227, 1269
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	284, 764
MmeI	TCCRAC	3 cut(s)	306, 547, 738
MnlI	CCTC	9 cut(s)	50, 55, 339, 616, 754, 780, 990, 1008, 1026
Mph1103I	ATGCAT	1 cut(s)	703
MreI	CGCCGGCG	2 cut(s)	52, 146
MroNI	GCCGGC	2 cut(s)	52, 146
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	5 cut(s)	53, 147, 183, 265, 977
MspR9I	CCNGG	1 cut(s)	977
MssI	GTTTAAAC	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	842
MvnI	CGCG	3 cut(s)	221, 262, 287
MwoI	GCNNNNNNNGC	2 cut(s)	268, 333
NaeI	GCCGGC	2 cut(s)	54, 148
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	977
NdeI	CATATG	1 cut(s)	558
NdeII	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
NgoMIV	GCCGGC	2 cut(s)	52, 146
NlaIII	CATG	5 cut(s)	196, 244, 640, 1099, 1254
NlaIV	GGNNCC	5 cut(s)	82, 145, 486, 564, 1077
NsiI	ATGCAT	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	9
OliI	CACNNNNGTG	1 cut(s)	920
PaeR7I	CTCGAG	1 cut(s)	272
PagI	TCATGA	2 cut(s)	192, 636
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 279
PctI	GAATGC	1 cut(s)	842
PdiI	GCCGGC	2 cut(s)	54, 148
PfeI	GAWTC	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	6 cut(s)	72, 75, 93, 289, 1002, 1041
PleI	GAGTC	2 cut(s)	283, 763
PluTI	GGCGCC	1 cut(s)	147
PmeI	GTTTAAAC	1 cut(s)	175
PpsI	GAGTC	2 cut(s)	283, 763
PspN4I	GGNNCC	5 cut(s)	82, 145, 486, 564, 1077
PspPI	GGNCC	1 cut(s)	1075
PspXI	VCTCGAGB	1 cut(s)	272
PsrI	GAACNNNNNNTAC	2 cut(s)	1110, 1142
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	2 cut(s)	167, 719
RsaNI	GTAC	2 cut(s)	166, 718
RseI	CAYNNNNRTG	1 cut(s)	920
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	6 cut(s)	71, 74, 92, 288, 1001, 1040
Sau3AI	GATC	8 cut(s)	44, 297, 435, 592, 615, 633, 882, 939
Sau96I	GGNCC	1 cut(s)	1075
SchI	GAGTC	2 cut(s)	284, 764
ScrFI	CCNGG	1 cut(s)	977
SduI	GDGCHC	2 cut(s)	85, 467
SetI	ASST	9 cut(s)	116, 209, 273, 350, 497, 897, 930, 1019, 1037
SfaNI	GCATC	2 cut(s)	234, 821
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	9
SgrAI	CRCCGGYG	2 cut(s)	52, 146
SinI	GGWCC	1 cut(s)	1075
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	535, 1227, 1269
SsiI	CCGC	5 cut(s)	50, 71, 92, 287, 1000
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	527, 1146
StyD4I	CCNGG	1 cut(s)	975
StyI	CCWWGG	1 cut(s)	895
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	9, 273, 452, 539
TasI	AATT	3 cut(s)	535, 1227, 1269
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	4 cut(s)	73, 94, 290, 1003
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	2 cut(s)	73, 1039
TspDTI	ATGAA	7 cut(s)	118, 656, 802, 986, 999, 1084, 1145
TspGWI	ACGGA	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	1075
XapI	RAATTY	2 cut(s)	535, 1269
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	527, 1146
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.