Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012818

Physical Location & Seq

Genomic Coordinates Reverse (-)

15716708 .. 15717992

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGTGGCGACAAGGAGGCAACCTCCTCGTCCCAGCGTCTCAGGCAGCCGCCCCCGACGGAGAGCACGCCGCTGATCGGCGACCCCAAGCCGCTGTCGTCCCAATCCAAGACCTTCGCCAACGTCTTCATCGCCGTCGTCGGAGCCGGCGTTCTTGGCCTCCCGTATTCCTTCAAGCGCACCGGGTGGCTCATGAGCCTCCTCACGCTCCTCCTCGTTCTCGAGTCTTCCAATGGGTTCACAAGGATCCCGTCTTTTGGGGATTTGGGTTTCGCCGTCTGCGGCGTTTGGGGGCGCTTGCTGGTGGATGTTCTGATCATTCTCGCTCAGGCCGGGTTCTGCGTCGGGTATCTCATTTTCATCGGTAATACTTTAGCACATTTGCTCAATGCACCCACAGCATCCGATTTGACACCCCAGATTTTGGGATTGGCACCCAAAAGCTTCTACATTTGGGGGTGTTTTCCCTTCCAATTGGGGTTGAATTCGATTGCAACACTGACCCATTTGGCCCCGTTGAGTATTTTTGCGGATGTGATTGATCTCGGAGCAATGGGGGTTGTGATGGTGGAGGATGTGGTGGTTATGTTGAAAAAAATGCCGGAAGTGAAGGCATTTGGAGACCTTTCTCTGTTCTTTTACGGGCTAGGCGTGGCAGTGTACTCCTTCGAAGGGGTTGGGATGGTTCTGCCATTGGAGTCGGAGGCGAAAGACAAGGACAAGTTTGGGAAGGTTCTGGCTTGGACAATGACATTCATTTCTCTGATGTATGGAAGCTTTGGAGCTCTTGGTTATTTTGCATTTGGGGACCAAACCAAGGATATGATCACGGCTAATTACGGTGCAGGATTGATTAGTACCCTGGTGAAGCTTGGCCTTGTGGTGAATCTGTTCTTCACATTGCCTATAATGATGAACCCGGTGTATGAGATTGTCGAAAGGCGGTTTTGGGGAGGGAGGTATTGCTTGTGGATGAGATGGATGCTGGTTTTGGCAGTGATCTTGGTGGCATTGTTGGTCCCCAATTTTGCGGATTTCATGTCGTTGGTGGGGAGTGGTGTGTGCTGTGCATTAGGGTTTGTGGTGCCGACTCTGTTTCATCTGATCGTGTTCAAGAGTGAGATGGGGTGGGGGCAATGGTGCTCTGATGTGAGCATTTTGGTGTTGGGAGTTGTTCTTGCGGTTTCAGGAACTTGGTCTGCTCTCCAGGAGATATTTGCTGCCAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015318 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

411

Amino Acids

44.38

Weight (kDa)

5.96

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42005 AT4G38250
fragaria_vesca	FvH4_2g16760
malus_domestica	MD10G1141500.v1.1
prunus_persica	Prupe.8G179700_v2.0.a1
pyrus_communis	pycom05g13360 pycom10g12110
rosa_chinensis	RchiOBHm_Chr6g0280881
rosa_laevigata	RLG00000013023
rosa_multiflora	Rmu_sc0004772.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187530
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248800 Rh6BG250500 Rh6BG250700 Rh6CG251500 Rh6DG243200
rosa_wichuraiana	Rw6G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	433, 1084
AccB7I	CCANNNNNTGG	1 cut(s)	424
AciI	CCGC	8 cut(s)	50, 71, 92, 282, 530, 943, 1031, 1181
AclWI	GGATC	2 cut(s)	241, 254
AcsI	RAATTY	1 cut(s)	484
AdeI	CACNNNGTG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	662, 859
AfiI	CCNNNNNNNGG	5 cut(s)	77, 257, 424, 672, 817
AgsI	TTSAA	4 cut(s)	175, 484, 592, 1114
AjnI	CCWGG	2 cut(s)	861, 1206
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	4 cut(s)	444, 777, 785, 871
AluI	AGCT	4 cut(s)	444, 777, 785, 871
Alw21I	GWGCWC	3 cut(s)	68, 787, 1145
Alw26I	GTCTC	2 cut(s)	44, 615
AlwI	GGATC	2 cut(s)	241, 254
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	157, 330, 510, 874
ApeKI	GCWGC	2 cut(s)	46, 1220
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	1 cut(s)	890
AspLEI	GCGC	2 cut(s)	180, 297
AspS9I	GGNCC	3 cut(s)	511, 808, 1018
AsuC2I	CCSGG	3 cut(s)	184, 334, 920
AsuHPI	GGTGA	2 cut(s)	877, 895
AsuII	TTCGAA	1 cut(s)	669
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	808, 1018
BamHI	GGATCC	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	433, 1084
BanII	GRGCYC	1 cut(s)	787
BbsI	GAAGAC	2 cut(s)	118, 219
Bbv12I	GWGCWC	3 cut(s)	68, 787, 1145
BbvI	GCAGC	2 cut(s)	58, 1207
BccI	CCATC	4 cut(s)	559, 676, 972, 1117
BceAI	ACGGC	3 cut(s)	119, 260, 846
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	2 cut(s)	863, 1208
BclI	TGATCA	2 cut(s)	315, 825
BcnI	CCSGG	3 cut(s)	184, 334, 920
BcoDI	GTCTC	2 cut(s)	44, 615
BfaI	CTAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	298
BisI	GCNGC	6 cut(s)	47, 50, 71, 92, 283, 1221
BlsI	GCNGC	6 cut(s)	48, 51, 72, 93, 284, 1222
Bme1390I	CCNGG	5 cut(s)	184, 334, 863, 920, 1208
Bme18I	GGWCC	2 cut(s)	808, 1018
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	511, 808, 1018
BmiI	GGNNCC	7 cut(s)	145, 248, 435, 513, 809, 1020, 1086
BmrFI	CCNGG	5 cut(s)	184, 334, 863, 920, 1208
BmsI	GCATC	2 cut(s)	410, 972
BpiI	GAAGAC	2 cut(s)	118, 219
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpmI	CTGGAG	1 cut(s)	1190
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	669
BpuMI	CCSGG	3 cut(s)	184, 334, 920
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	816, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 257, 424, 672, 817
Bse118I	RCCGGY	1 cut(s)	146
Bse3DI	GCAATG	3 cut(s)	558, 899, 1142
BseBI	CCWGG	2 cut(s)	863, 1208
BseDI	CCNNGG	2 cut(s)	816, 861
BseGI	GGATG	7 cut(s)	313, 401, 538, 580, 687, 978, 987
BseLI	CCNNNNNNNGG	5 cut(s)	77, 257, 424, 672, 817
BseMI	GCAATG	3 cut(s)	558, 899, 1142
BseMII	CTCAG	2 cut(s)	55, 341
BseRI	GAGGAG	4 cut(s)	16, 191, 200, 203
BseXI	GCAGC	2 cut(s)	58, 1207
BseYI	CCCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	4 cut(s)	159, 332, 512, 876
BshNI	GGYRCC	2 cut(s)	433, 1084
BsiHKAI	GWGCWC	3 cut(s)	68, 787, 1145
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	5 cut(s)	147, 183, 333, 602, 920
BslFI	GGGAC	4 cut(s)	16, 85, 821, 1004
BslI	CCNNNNNNNGG	5 cut(s)	77, 257, 424, 672, 817
BsmAI	GTCTC	2 cut(s)	44, 615
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	4 cut(s)	16, 85, 821, 1004
BsnI	GGCC	4 cut(s)	159, 332, 512, 876
Bso31I	GGTCTC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	669
Bsp1286I	GDGCHC	3 cut(s)	68, 787, 1145
Bsp143I	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
BspACI	CCGC	8 cut(s)	50, 71, 92, 282, 530, 943, 1031, 1181
BspANI	GGCC	4 cut(s)	159, 332, 512, 876
BspCNI	CTCAG	2 cut(s)	54, 340
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	7 cut(s)	145, 248, 435, 513, 809, 1020, 1086
BspPI	GGATC	2 cut(s)	241, 254
BspT104I	TTCGAA	1 cut(s)	669
BspT107I	GGYRCC	2 cut(s)	433, 1084
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	3 cut(s)	558, 899, 1142
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	816, 861
BssMI	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	2 cut(s)	863, 1208
Bst4CI	ACNGT	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	3 cut(s)	68, 148, 299
BstDEI	CTNAG	2 cut(s)	41, 327
BstF5I	GGATG	7 cut(s)	313, 401, 538, 580, 687, 978, 987
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	180, 297
BstKTI	GATC	7 cut(s)	78, 249, 318, 544, 828, 1002, 1107
BstMAI	GTCTC	2 cut(s)	44, 615
BstMBI	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 156, 398
BstNI	CCWGG	2 cut(s)	863, 1208
BstSCI	CCNGG	5 cut(s)	182, 332, 861, 918, 1206
BstV1I	GCAGC	2 cut(s)	58, 1207
BstV2I	GAAGAC	2 cut(s)	118, 219
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	4 cut(s)	159, 332, 512, 876
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	7 cut(s)	313, 401, 538, 580, 687, 978, 987
BtsI	GCAGTG	2 cut(s)	663, 1002
BtsIMutI	CAGTG	3 cut(s)	497, 663, 1002
Cac8I	GCNNGC	3 cut(s)	68, 148, 299
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	2 cut(s)	180, 297
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	511, 808, 1018
CseI	GACGC	2 cut(s)	26, 331
Csp6I	GTAC	2 cut(s)	661, 858
CviAII	CATG	2 cut(s)	193, 1039
CviQI	GTAC	2 cut(s)	661, 858
DdeI	CTNAG	2 cut(s)	41, 327
DpnI	GATC	7 cut(s)	77, 248, 317, 543, 827, 1001, 1106
DpnII	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
DraIII	CACNNNGTG	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	1 cut(s)	787
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	808, 1018
Eco53kI	GAGCTC	1 cut(s)	785
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	861, 1206
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	2 cut(s)	196, 1042
FaiI	YATR	8 cut(s)	194, 587, 771, 824, 908, 927, 1040, 1231
FaqI	GGGAC	4 cut(s)	16, 85, 821, 1004
FatI	CATG	2 cut(s)	192, 1038
FbaI	TGATCA	2 cut(s)	315, 825
Fnu4HI	GCNGC	6 cut(s)	47, 50, 71, 92, 283, 1221
FokI	GGATG	7 cut(s)	320, 388, 545, 587, 694, 985, 994
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	6 cut(s)	47, 50, 71, 92, 283, 1221
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	2 cut(s)	179, 296
GluI	GCNGC	6 cut(s)	47, 50, 71, 92, 283, 1221
GsaI	CCCAGC	1 cut(s)	37
GsuI	CTGGAG	1 cut(s)	1190
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	4 cut(s)	159, 332, 512, 876
HapII	CCGG	5 cut(s)	147, 183, 333, 602, 920
HgaI	GACGC	2 cut(s)	26, 331
HhaI	GCGC	2 cut(s)	180, 297
Hin1II	CATG	2 cut(s)	196, 1042
Hin6I	GCGC	2 cut(s)	178, 295
HinP1I	GCGC	2 cut(s)	178, 295
HindIII	AAGCTT	3 cut(s)	442, 775, 869
HinfI	GANTC	4 cut(s)	224, 698, 886, 1090
HpaII	CCGG	5 cut(s)	147, 183, 333, 602, 920
HphI	GGTGA	2 cut(s)	877, 895
Hpy166II	GTNNAC	2 cut(s)	240, 661
Hpy188I	TCNGA	8 cut(s)	143, 315, 406, 548, 703, 765, 1104, 1147
Hpy188III	TCNNGA	4 cut(s)	193, 221, 1114, 1188
Hpy8I	GTNNAC	2 cut(s)	240, 661
Hpy99I	CGWCG	4 cut(s)	61, 140, 143, 347
HpyAV	CCTTC	7 cut(s)	124, 181, 478, 604, 665, 676, 724
HpyCH4III	ACNGT	1 cut(s)	842
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	5 cut(s)	392, 494, 800, 845, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 156, 398
HpyF3I	CTNAG	2 cut(s)	41, 327
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	196, 1042
HspAI	GCGC	2 cut(s)	178, 295
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	2 cut(s)	315, 825
Kzo9I	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
LmnI	GCTCC	4 cut(s)	143, 213, 548, 782
Lsp1109I	GCAGC	2 cut(s)	58, 1207
LweI	GCATC	2 cut(s)	410, 972
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	1 cut(s)	123
MalI	GATC	7 cut(s)	77, 248, 317, 543, 827, 1001, 1106
MboI	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
MboII	GAAGA	3 cut(s)	118, 219, 886
MfeI	CAATTG	1 cut(s)	473
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	68, 787, 1145
MluCI	AATT	4 cut(s)	473, 484, 835, 1024
MlyI	GAGTC	3 cut(s)	233, 707, 1084
MmeI	TCCRAC	2 cut(s)	121, 681
MroNI	GCCGGC	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	890
MslI	CAYNNNNRTG	1 cut(s)	1160
MspA1I	CMGCKG	2 cut(s)	73, 94
MspI	CCGG	5 cut(s)	147, 183, 333, 602, 920
MspR9I	CCNGG	5 cut(s)	184, 334, 863, 920, 1208
MunI	CAATTG	1 cut(s)	473
MvaI	CCWGG	2 cut(s)	863, 1208
MwoI	GCNNNNNNNGC	3 cut(s)	43, 156, 398
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	3 cut(s)	184, 334, 920
NdeII	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	196, 1042
NlaIV	GGNNCC	7 cut(s)	145, 248, 435, 513, 809, 1020, 1086
NspV	TTCGAA	1 cut(s)	669
PaeR7I	CTCGAG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 648
PdiI	GCCGGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	1 cut(s)	886
PflMI	CCANNNNNTGG	1 cut(s)	424
PfoI	TCCNGGA	1 cut(s)	1206
PkrI	GCNGC	6 cut(s)	48, 51, 72, 93, 284, 1222
PleI	GAGTC	3 cut(s)	232, 706, 1084
PpsI	GAGTC	3 cut(s)	232, 706, 1084
Psp124BI	GAGCTC	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	861, 1206
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	2 cut(s)	861, 1206
PspN4I	GGNNCC	7 cut(s)	145, 248, 435, 513, 809, 1020, 1086
PspPI	GGNCC	3 cut(s)	511, 808, 1018
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	2 cut(s)	662, 859
RsaNI	GTAC	2 cut(s)	661, 858
RseI	CAYNNNNRTG	1 cut(s)	1160
SacI	GAGCTC	1 cut(s)	787
SatI	GCNGC	6 cut(s)	47, 50, 71, 92, 283, 1221
Sau3AI	GATC	7 cut(s)	75, 246, 315, 541, 825, 999, 1104
Sau96I	GGNCC	3 cut(s)	511, 808, 1018
SchI	GAGTC	3 cut(s)	233, 707, 1084
ScrFI	CCNGG	5 cut(s)	184, 334, 863, 920, 1208
SduI	GDGCHC	3 cut(s)	68, 787, 1145
SfaNI	GCATC	2 cut(s)	410, 972
Sfr274I	CTCGAG	1 cut(s)	221
SfuI	TTCGAA	1 cut(s)	669
SinI	GGWCC	2 cut(s)	808, 1018
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	1160
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	473, 484, 835, 1024
SsiI	CCGC	8 cut(s)	50, 71, 92, 282, 530, 943, 1031, 1181
SspMI	CTAG	1 cut(s)	647
SstI	GAGCTC	1 cut(s)	787
StyD4I	CCNGG	5 cut(s)	182, 332, 861, 918, 1206
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	1 cut(s)	842
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	222, 488, 669, 936
TasI	AATT	4 cut(s)	473, 484, 835, 1024
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	4 cut(s)	52, 73, 94, 285
TfiI	GAWTC	1 cut(s)	886
TscAI	CASTG	3 cut(s)	504, 663, 1002
TseI	GCWGC	2 cut(s)	46, 1220
TspDTI	ATGAA	6 cut(s)	118, 349, 745, 929, 1027, 1088
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	3 cut(s)	504, 663, 1002
Van91I	CCANNNNNTGG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	808, 1018
XapI	RAATTY	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.