AT2G42140

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014158
Physical Location & Seq
Reverse (-)
17568677 .. 17569669
993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42140.1

Sequence Viewer

Length: 519 bp
ATGGAAATTGAAGCTACTACTGTTCAGAAAAGAAGAAGCTTACCAACAATAGCCATGCACAAACAGTCAAGAACACTCACCAAATCTAAACCTAAGATCCGAATCATTCACATATTCGCACCGGAGATCATTAAGACCGATGTCGCCAACTTCCGGGAAATCGTCCAGAATCTCACCGGGAAACAAGATCATCATCACCACGATCTCCCCCACCAAAAGGGTCTCAAAAGAAACCCTAGATCTAGAAGAAGTCATGATCATCATGAAGTCCATGACATGAACAAGAGCCATGGATTTTGCATAAACTCAGATGAAGAGGAAGAAGGGATGGTGTCGATGACGTGGAACGGAAATGGTGACGAGAGCTCCGGTGGGTTCTTGAACGGGTTAGGAGATCTCGACGGCTTCATTCAGGAGCTAGGTGAATTTCCTTATTTACCCTTCACCATTGACCCTGCCGTTGCTTCTTCCTCCCACTTACATGGCAACGTTTTCGCAGAACCTCACCATTACGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

172

Amino Acids

19.5

Weight (kDa)

6.45

Isoelectric Point (pI)

67.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 38 - 64 1.8e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 489
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 153, 217
AgsI TTSAA 2 cut(s) 11, 382
AjiI CACGTC 1 cut(s) 342
AluBI AGCT 4 cut(s) 14, 39, 366, 418
AluI AGCT 4 cut(s) 14, 39, 366, 418
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 425
AsuC2I CCSGG 2 cut(s) 155, 178
AsuHPI GGTGA 7 cut(s) 70, 166, 188, 368, 434, 436, 497
BanII GRGCYC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 368
BccI CCATC 1 cut(s) 322
BceAI ACGGC 2 cut(s) 418, 443
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 2 cut(s) 155, 178
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 3 cut(s) 237, 243, 419
BglII AGATCT 2 cut(s) 239, 394
Bme1390I CCNGG 2 cut(s) 155, 178
BmgBI CACGTC 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 155, 178
BoxI GACNNNNGTC 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 155, 178
BsaBI GATNNNNATC 2 cut(s) 101, 192
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 2 cut(s) 121, 368
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 217
Bse8I GATNNNNATC 2 cut(s) 101, 192
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 333
BseJI GATNNNNATC 2 cut(s) 101, 192
BseLI CCNNNNNNNGG 2 cut(s) 153, 217
BseMII CTCAG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 4 cut(s) 122, 154, 177, 369
BslI CCNNNNNNNGG 2 cut(s) 153, 217
BsmAI GTCTC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
Bsp19I CCATGG 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 320
BspHI TCATGA 2 cut(s) 253, 262
BspPI GGATC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 22, 66
Bst6I CTCTTC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 93, 307
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 7 cut(s) 99, 129, 190, 205, 242, 259, 397
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 153, 176
BstX2I RGATCY 3 cut(s) 96, 239, 394
BstXI CCANNNNNNTGG 1 cut(s) 482
BstYI RGATCY 3 cut(s) 96, 239, 394
BtgI CCRYGG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 333
CciI TCATGA 2 cut(s) 253, 262
CviAII CATG 7 cut(s) 55, 254, 263, 272, 277, 290, 482
CviJI RGCY 7 cut(s) 14, 39, 53, 288, 366, 405, 418
CviKI_1 RGCY 7 cut(s) 14, 39, 53, 288, 366, 405, 418
DdeI CTNAG 2 cut(s) 93, 307
DpnI GATC 7 cut(s) 98, 128, 189, 204, 241, 258, 396
DpnII GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 7 cut(s) 58, 257, 266, 275, 280, 293, 485
FaiI YATR 9 cut(s) 56, 113, 255, 264, 273, 278, 291, 302, 483
FatI CATG 7 cut(s) 54, 253, 262, 271, 276, 289, 481
FbaI TGATCA 1 cut(s) 256
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 1 cut(s) 368
FspBI CTAG 3 cut(s) 237, 243, 419
HapII CCGG 4 cut(s) 122, 154, 177, 369
Hin1II CATG 7 cut(s) 58, 257, 266, 275, 280, 293, 485
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 2 cut(s) 102, 169
HpaII CCGG 4 cut(s) 122, 154, 177, 369
HphI GGTGA 7 cut(s) 70, 166, 188, 368, 434, 436, 497
Hpy188I TCNGA 3 cut(s) 27, 101, 310
Hpy188III TCNNGA 8 cut(s) 69, 166, 243, 254, 263, 379, 398, 413
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 2 cut(s) 317, 451
HpyCH4III ACNGT 2 cut(s) 22, 66
HpyCH4IV ACGT 2 cut(s) 341, 489
HpyCH4V TGCA 2 cut(s) 58, 300
HpyF3I CTNAG 2 cut(s) 93, 307
HpySE526I ACGT 2 cut(s) 341, 489
Hsp92II CATG 7 cut(s) 58, 257, 266, 275, 280, 293, 485
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
LmnI GCTCC 2 cut(s) 371, 415
LpnPI CCDG 7 cut(s) 135, 167, 179, 190, 382, 398, 468
MaeI CTAG 3 cut(s) 237, 243, 419
MaeII ACGT 2 cut(s) 341, 489
MaeIII GTNAC 1 cut(s) 356
MalI GATC 7 cut(s) 98, 128, 189, 204, 241, 258, 396
MboI GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
MboII GAAGA 5 cut(s) 45, 258, 326, 332, 459
MflI RGATCY 3 cut(s) 96, 239, 394
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 2 cut(s) 6, 425
MnlI CCTC 3 cut(s) 310, 481, 513
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 4 cut(s) 122, 154, 177, 369
MspR9I CCNGG 2 cut(s) 155, 178
NciI CCSGG 2 cut(s) 155, 178
NcoI CCATGG 1 cut(s) 289
NdeII GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
NlaIII CATG 7 cut(s) 58, 257, 266, 275, 280, 293, 485
NmuCI GTSAC 1 cut(s) 356
PagI TCATGA 2 cut(s) 253, 262
PfeI GAWTC 2 cut(s) 102, 169
PfoI TCCNGGA 1 cut(s) 153
PshAI GACNNNNGTC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 368
Psp1406I AACGTT 1 cut(s) 489
PsuI RGATCY 3 cut(s) 96, 239, 394
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 7 cut(s) 96, 126, 187, 202, 239, 256, 394
ScrFI CCNGG 2 cut(s) 155, 178
SduI GDGCHC 1 cut(s) 368
SetI ASST 9 cut(s) 16, 41, 94, 344, 368, 420, 424, 492, 505
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 2 cut(s) 6, 425
SspMI CTAG 3 cut(s) 237, 243, 419
SstI GAGCTC 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 153, 176
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 22, 66
TaiI ACGT 2 cut(s) 344, 492
TaqI TCGA 2 cut(s) 335, 399
TaqII GACCGA 1 cut(s) 152
TasI AATT 2 cut(s) 6, 425
TfiI GAWTC 2 cut(s) 102, 169
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 4 cut(s) 279, 293, 327, 397
TspGWI ACGGA 1 cut(s) 363
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 242
XspI CTAG 3 cut(s) 237, 243, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.