MD14G1058100.v1.1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014158
Physical Location & Seq
Reverse (-)
5978693 .. 5979217
525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1058100.v1.1.491

Sequence Viewer

Length: 525 bp
ATGGAGGAGGCTCAGACGCTAACCAAGAAGCATACTTTCTGCTCAAACTTTCCAGCAATCCACAGAGACTCACAGATAATATCAAAATCAAAGCCCAAAATCCGAATTATTCACATATTTGCCCCAGAGATCATCAAGACTGACGTGGCAAACTTCAGGGAGCTGGTTCAGAGACTCACTGGAAAACCATCGGAAAACGGCGGCTGCAGCAACAAGAGGAACATCAAGGAAAACCCAACAAGCATACCTAGCAAAGAAGAACCCAAACCCAGCAAAAAGAATGCATTGATCATGGCTGACAAGATGAGAGCTGGGTGCAGGGGATTTGTGGACCAATCGAGAGACAGGGTTAAGGGAGAAGAAGGGCTGATGTGGAATGCAGAAAACTCTGGTGGGTTTCTTGACAGATTTGCCGACTTGGAGGGGTTTATTCAGGAATTTGGTGGTGAATTTCCTTTGCTGCCCATTTTGGATGCTCCAAATTCTCACCTCCTGCATGGTTTTGAAGGAACCCAACTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

175

Amino Acids

19.48

Weight (kDa)

8.44

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 39 - 64 2.1e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AcsI RAATTY 3 cut(s) 437, 449, 481
AcuI CTGAAG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 506
AjiI CACGTC 1 cut(s) 145
AluBI AGCT 2 cut(s) 163, 311
AluI AGCT 2 cut(s) 163, 311
Alw26I GTCTC 3 cut(s) 60, 166, 336
ApeKI GCWGC 3 cut(s) 204, 207, 460
ApoI RAATTY 3 cut(s) 437, 449, 481
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 458, 479
AvaII GGWCC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 191, 219, 447
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 214
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 60, 166, 336
BfaI CTAG 2 cut(s) 249, 523
BfmI CTRYAG 1 cut(s) 205
BisI GCNGC 4 cut(s) 202, 205, 208, 461
BlsI GCNGC 4 cut(s) 203, 206, 209, 462
Bme18I GGWCC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 511
BmsI GCATC 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 191, 219, 447
BseYI CCCAGC 2 cut(s) 269, 311
BsgI GTGCAG 1 cut(s) 337
BsmAI GTCTC 3 cut(s) 60, 166, 336
BsmI GAATGC 2 cut(s) 286, 382
Bsp143I GATC 2 cut(s) 129, 288
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 511
BspMAI CTGCAG 1 cut(s) 209
BsrI ACTGG 1 cut(s) 184
BssMI GATC 2 cut(s) 129, 288
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 2 cut(s) 132, 291
BstMAI GTCTC 3 cut(s) 60, 166, 336
BstMBI GATC 2 cut(s) 129, 288
BstMWI GCNNNNNNNGC 2 cut(s) 207, 249
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 3 cut(s) 191, 219, 447
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 1 cut(s) 25
CviAII CATG 2 cut(s) 292, 497
CviJI RGCY 7 cut(s) 11, 94, 163, 204, 296, 311, 367
CviKI_1 RGCY 7 cut(s) 11, 94, 163, 204, 296, 311, 367
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 131, 290
DpnII GATC 2 cut(s) 129, 288
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 286
FaeI CATG 2 cut(s) 295, 500
FaiI YATR 5 cut(s) 33, 116, 245, 293, 498
FatI CATG 2 cut(s) 291, 496
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 202, 205, 208, 461
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 4 cut(s) 202, 205, 208, 461
FspBI CTAG 2 cut(s) 249, 523
GluI GCNGC 4 cut(s) 202, 205, 208, 461
GsaI CCCAGC 2 cut(s) 273, 315
HgaI GACGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 295, 500
HinfI GANTC 2 cut(s) 68, 174
HphI GGTGA 2 cut(s) 458, 479
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 4 cut(s) 15, 104, 171, 193
Hpy188III TCNNGA 4 cut(s) 136, 339, 401, 434
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 356, 500
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 5 cut(s) 207, 284, 318, 380, 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 249
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 295, 500
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 129, 288
LmnI GCTCC 2 cut(s) 160, 481
Lsp1109I GCAGC 3 cut(s) 191, 219, 447
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 249, 523
MaeII ACGT 1 cut(s) 144
MalI GATC 2 cut(s) 131, 290
MboI GATC 2 cut(s) 129, 288
MboII GAAGA 2 cut(s) 269, 371
MluCI AATT 4 cut(s) 105, 437, 449, 481
MlyI GAGTC 2 cut(s) 62, 168
MnlI CCTC 3 cut(s) 210, 415, 500
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 1 cut(s) 351
Mva1269I GAATGC 2 cut(s) 286, 382
MwoI GCNNNNNNNGC 2 cut(s) 207, 249
NdeII GATC 2 cut(s) 129, 288
NlaIII CATG 2 cut(s) 295, 500
NlaIV GGNNCC 1 cut(s) 511
NsiI ATGCAT 1 cut(s) 286
PctI GAATGC 2 cut(s) 286, 382
PkrI GCNGC 4 cut(s) 203, 206, 209, 462
PleI GAGTC 2 cut(s) 62, 168
PpsI GAGTC 2 cut(s) 62, 168
PspFI CCCAGC 2 cut(s) 269, 311
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 1 cut(s) 331
PstI CTGCAG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 202, 205, 208, 461
Sau3AI GATC 2 cut(s) 129, 288
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 2 cut(s) 62, 168
SetI ASST 5 cut(s) 147, 165, 250, 313, 492
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 1 cut(s) 331
Sse9I AATT 4 cut(s) 105, 437, 449, 481
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 249, 523
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 338
TasI AATT 4 cut(s) 105, 437, 449, 481
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 184
TseI GCWGC 3 cut(s) 204, 207, 460
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 3 cut(s) 437, 449, 481
XspI CTAG 2 cut(s) 249, 523
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.