Rroxscaffold_6G00402040

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014158
Physical Location & Seq
Forward (+)
24446063 .. 24446631
569 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00402040.1

Sequence Viewer

Length: 483 bp
ATGGAGGAGATGATGATGATGAGCAAGAAGCAAACTTGGGGAACAAGTACTACCAATTCTTGCTCAAATGCTTTGGCCATTCACAGAGACTCACAGACAATATCAAAACCAAAACCCAAAATCAGAATCATCCACATATTTGCACCCGAAATCATCAAGACCGACGTGGCCAATTTCCGGGAGCTAGTCCAGAGACTCACCGGAAAACCATCCGACAACGGCTACACCAACAACAAGAAGAAGAGGGCGCATGGAGTTCCCAGCAGAGGGTCAGAAGCTCATCAGAGAAGTGCATTCATGGCCGAGACCAAGAAAATGGAGCTGATGAGTAGTACCGGAGCCGGTGGGTTTTTGGAGAGGTTTGCAGATTTGGAAGGGTTTATACAAGAGCTTGGTGAATTTCCTATGCTACCCAATTTGGATTCTACTTCTGCTTCAAATTCCCACTTGCTGCATGGTTTTGAAGGCACCCAACTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

160

Amino Acids

17.77

Weight (kDa)

9.1

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 46 - 72 8.6e-13 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 467
AcoI YGGCCR 3 cut(s) 75, 168, 300
AcsI RAATTY 2 cut(s) 398, 439
AfaI GTAC 2 cut(s) 49, 334
AfiI CCNNNNNNNGG 3 cut(s) 177, 266, 267
AgsI TTSAA 2 cut(s) 438, 464
AjiI CACGTC 1 cut(s) 166
AluBI AGCT 4 cut(s) 184, 278, 322, 391
AluI AGCT 4 cut(s) 184, 278, 322, 391
Alw26I GTCTC 3 cut(s) 81, 187, 299
AoxI GGCC 3 cut(s) 75, 168, 300
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 2 cut(s) 398, 439
AspLEI GCGC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 190, 407
BalI TGGCCA 2 cut(s) 77, 170
BanI GGYRCC 1 cut(s) 467
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbvI GCAGC 1 cut(s) 438
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 81, 187, 299
BfaI CTAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 340, 469
BmrFI CCNGG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 299
BsaWI WCCGGW 2 cut(s) 200, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 266, 267
Bse118I RCCGGY 1 cut(s) 341
BseGI GGATG 2 cut(s) 129, 209
BseLI CCNNNNNNNGG 3 cut(s) 177, 266, 267
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 260
BshFI GGCC 3 cut(s) 77, 170, 302
BshNI GGYRCC 1 cut(s) 467
BsiSI CCGG 4 cut(s) 178, 201, 336, 342
BslI CCNNNNNNNGG 3 cut(s) 177, 266, 267
BsmAI GTCTC 3 cut(s) 81, 187, 299
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 3 cut(s) 77, 170, 302
Bso31I GGTCTC 1 cut(s) 299
BspANI GGCC 3 cut(s) 77, 170, 302
BspLI GGNNCC 2 cut(s) 340, 469
BspT107I GGYRCC 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 236
BstF5I GGATG 2 cut(s) 129, 209
BstHHI GCGC 1 cut(s) 250
BstMAI GTCTC 3 cut(s) 81, 187, 299
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 438
BstXI CCANNNNNNTGG 1 cut(s) 316
BsuRI GGCC 3 cut(s) 77, 170, 302
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 129, 209
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 341
Csp6I GTAC 2 cut(s) 48, 333
CviAII CATG 3 cut(s) 251, 298, 455
CviJI RGCY 9 cut(s) 77, 170, 184, 222, 278, 302, 322, 341, 391
CviKI_1 RGCY 9 cut(s) 77, 170, 184, 222, 278, 302, 322, 341, 391
CviQI GTAC 2 cut(s) 48, 333
EaeI YGGCCR 3 cut(s) 75, 168, 300
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 299
FaeI CATG 3 cut(s) 254, 301, 458
FaiI YATR 6 cut(s) 137, 252, 299, 383, 407, 456
FatI CATG 3 cut(s) 250, 297, 454
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 2 cut(s) 116, 196
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 452
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 3 cut(s) 77, 170, 302
HapII CCGG 4 cut(s) 178, 201, 336, 342
HhaI GCGC 1 cut(s) 250
Hin1II CATG 3 cut(s) 254, 301, 458
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 4 cut(s) 89, 126, 195, 422
HpaII CCGG 4 cut(s) 178, 201, 336, 342
HphI GGTGA 2 cut(s) 190, 407
Hpy188I TCNGA 4 cut(s) 125, 214, 274, 285
Hpy188III TCNNGA 2 cut(s) 157, 190
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 368, 458
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 143, 293, 365, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 254, 301, 458
HspAI GCGC 1 cut(s) 248
LmnI GCTCC 3 cut(s) 181, 319, 338
LpnPI CCDG 6 cut(s) 191, 203, 214, 274, 349, 355
Lsp1109I GCAGC 1 cut(s) 438
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 165
MboII GAAGA 2 cut(s) 250, 253
MlsI TGGCCA 2 cut(s) 77, 170
MluCI AATT 5 cut(s) 55, 172, 398, 415, 439
MluNI TGGCCA 2 cut(s) 77, 170
MlyI GAGTC 2 cut(s) 83, 189
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 237, 260, 351
Mox20I TGGCCA 2 cut(s) 77, 170
MscI TGGCCA 2 cut(s) 77, 170
Msp20I TGGCCA 2 cut(s) 77, 170
MspI CCGG 4 cut(s) 178, 201, 336, 342
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 1 cut(s) 179
NlaIII CATG 3 cut(s) 254, 301, 458
NlaIV GGNNCC 2 cut(s) 340, 469
NmeAIII GCCGAG 1 cut(s) 328
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 126, 422
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 1 cut(s) 453
PleI GAGTC 2 cut(s) 83, 189
PpsI GAGTC 2 cut(s) 83, 189
PspFI CCCAGC 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 340, 469
PsrI GAACNNNNNNTAC 2 cut(s) 34, 66
RsaI GTAC 2 cut(s) 49, 334
RsaNI GTAC 2 cut(s) 48, 333
SatI GCNGC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 83, 189
ScrFI CCNGG 1 cut(s) 179
SetI ASST 6 cut(s) 168, 186, 280, 324, 362, 393
Sse9I AATT 5 cut(s) 55, 172, 398, 415, 439
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 177
TaiI ACGT 1 cut(s) 168
TaqII GACCGA 1 cut(s) 176
TasI AATT 5 cut(s) 55, 172, 398, 415, 439
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 126, 422
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 286
XapI RAATTY 2 cut(s) 398, 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XspI CTAG 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.