Rorug03G0177900

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014158
Physical Location & Seq
Forward (+)
15124504 .. 15125551
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0177900.1

Sequence Viewer

Length: 825 bp
ATGGGAAACTTTAACCTCCCCGATGACGTCTGGTTCGTTTTCAACCTCATCTCCCCCGGTGACGTCATCATCGCCACCACCACCCGCAACGTCAAATACAGCTCCAGCGTGAAGACCAAGCTCTGCGCTAAGGTGGAAACTCACTCCAACCCTAACAAGTACTTCGAGAACATTTTCCGGGCTTTCGTGAAGCACGTTGATCTGAGCGTCGTACGGTGCGTTGTAATAGGGAGTCAGGGAAACGCGAAGGACGAGTTCCGTCGTTTTATGATTGCGAAGGCGAATAGGTTGAAGGTCAAGTCAGTAGAGAACAACAAGCAACGCATTGTCGTTTTTAACACGAGGAGCAAAGGGCACGACTGGAACAGTAGTTTGCATAAGGTTTTGCATGACAGTACCGTGATGAACTTGATCAGAGACACCAAGGCTGTGATGGAGATCAAGGCTTTTAAGGAGTTTTTGGATTTGCTAACAACGGATTTGGACCGAGTGTGTTATGGTACCAAGAATGTGGAGATGGCGCATGAGTTAAAGGCCATTGAAACGCTCTTGATTACCGATGACTTGTACGAGAGTGTAGAGATTGAGACGAGGTATAAGTATATAGGGTTTGGGGAGTCGGTGAAAAAGGCAGGAGGGAAGGCTTTTGTGTTTTCGTCAAAGCATGTATCTGGAGAGGCGCTAGCTAATCTGAGCGGCATTGCGGCAATTCTGAGGTTTCCACTGCCTGATCTTGATGGTTTCTTAAATCCTTCAGTACTGTATAGGCTTTCAGTTTTGTTTACTCTGTTCGTAATCGACAATTTTGTTAGTTTAGCGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

274

Amino Acids

30.88

Weight (kDa)

9.1

Isoelectric Point (pI)

25.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eRF1_2 PF03464 47 - 136 2.3e-06 eRF1 domain 2
eRF1_3 PF03465 144 - 242 1.1e-22 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 30, 66
Acc65I GGTACC 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 500
AccBSI CCGCTC 1 cut(s) 696
AccII CGCG 1 cut(s) 245
AciI CCGC 4 cut(s) 85, 696, 704, 818
AcuI CTGAAG 1 cut(s) 738
AcyI GRCGYC 2 cut(s) 27, 63
AfaI GTAC 6 cut(s) 161, 213, 397, 502, 569, 759
AgsI TTSAA 3 cut(s) 43, 292, 542
AluBI AGCT 3 cut(s) 102, 121, 686
AluI AGCT 3 cut(s) 102, 121, 686
Alw26I GTCTC 2 cut(s) 411, 581
AoxI GGCC 1 cut(s) 534
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 500
AspLEI GCGC 3 cut(s) 128, 523, 682
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 2 cut(s) 57, 179
AsuHPI GGTGA 2 cut(s) 71, 634
AsuNHI GCTAGC 1 cut(s) 682
AvaII GGWCC 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 500
BauI CACGAG 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 119
BccI CCATC 3 cut(s) 427, 511, 731
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 2 cut(s) 57, 179
BcoDI GTCTC 2 cut(s) 411, 581
BfaI CTAG 1 cut(s) 683
BfoI RGCGCY 1 cut(s) 683
BisI GCNGC 3 cut(s) 697, 705, 819
BlsI GCNGC 3 cut(s) 698, 706, 820
BmcAI AGTACT 2 cut(s) 161, 759
Bme1390I CCNGG 2 cut(s) 57, 179
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 2 cut(s) 57, 179
BmtI GCTAGC 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 2 cut(s) 88, 693
Bpu10I CCTNAGC 1 cut(s) 129
BpuMI CCSGG 2 cut(s) 57, 179
BsaBI GATNNNNATC 1 cut(s) 437
BsaHI GRCGYC 2 cut(s) 27, 63
BsaJI CCNNGG 2 cut(s) 55, 423
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 55, 423
BseJI GATNNNNATC 1 cut(s) 437
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 3 cut(s) 194, 683, 704
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 358
BseSI GKGCMC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 500
BsiSI CCGG 2 cut(s) 57, 178
BsiWI CGTACG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 411, 581
BsmBI CGTCTC 1 cut(s) 581
BsnI GGCC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 4 cut(s) 199, 411, 438, 730
BspACI CCGC 4 cut(s) 85, 696, 704, 818
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 3 cut(s) 195, 684, 705
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 502
BspOI GCTAGC 1 cut(s) 686
BspT107I GGYRCC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 696
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 55, 423
BssMI GATC 4 cut(s) 199, 411, 438, 730
BssNI GRCGYC 2 cut(s) 27, 63
BssSI CACGAG 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 340
Bst4CI ACNGT 5 cut(s) 216, 368, 395, 400, 762
BstACI GRCGYC 2 cut(s) 27, 63
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 4 cut(s) 129, 203, 692, 713
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 683
BstHHI GCGC 3 cut(s) 128, 523, 682
BstKTI GATC 4 cut(s) 202, 414, 441, 733
BstMAI GTCTC 2 cut(s) 411, 581
BstMBI GATC 4 cut(s) 199, 411, 438, 730
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 2 cut(s) 55, 177
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 511
BsuRI GGCC 1 cut(s) 536
BtgZI GCGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 1 cut(s) 722
Cac8I GCNNGC 1 cut(s) 684
CfoI GCGC 3 cut(s) 128, 523, 682
Cfr13I GGNCC 1 cut(s) 484
CseI GACGC 1 cut(s) 196
Csp6I GTAC 6 cut(s) 160, 212, 396, 501, 568, 758
CviAII CATG 4 cut(s) 389, 524, 665, 822
CviJI RGCY 9 cut(s) 102, 121, 182, 428, 446, 536, 644, 686, 769
CviKI_1 RGCY 9 cut(s) 102, 121, 182, 428, 446, 536, 644, 686, 769
CviQI GTAC 6 cut(s) 160, 212, 396, 501, 568, 758
DdeI CTNAG 4 cut(s) 129, 203, 692, 713
DpnI GATC 4 cut(s) 201, 413, 440, 732
DpnII GATC 4 cut(s) 199, 411, 438, 730
Eco130I CCWWGG 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 581
FaeI CATG 4 cut(s) 392, 527, 668, 825
FatI CATG 4 cut(s) 388, 523, 664, 821
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 697, 705, 819
Fsp4HI GCNGC 3 cut(s) 697, 705, 819
FspBI CTAG 1 cut(s) 683
GlaI GCGC 3 cut(s) 127, 522, 681
GluI GCNGC 3 cut(s) 697, 705, 819
GsuI CTGGAG 2 cut(s) 88, 693
HaeII RGCGCY 1 cut(s) 683
HaeIII GGCC 1 cut(s) 536
HapII CCGG 2 cut(s) 57, 178
HgaI GACGC 1 cut(s) 196
HhaI GCGC 3 cut(s) 128, 523, 682
Hin1I GRCGYC 2 cut(s) 27, 63
Hin1II CATG 4 cut(s) 392, 527, 668, 825
Hin6I GCGC 3 cut(s) 126, 521, 680
HinP1I GCGC 3 cut(s) 126, 521, 680
HinfI GANTC 2 cut(s) 232, 617
HpaII CCGG 2 cut(s) 57, 178
HphI GGTGA 2 cut(s) 71, 634
Hpy166II GTNNAC 1 cut(s) 783
Hpy188I TCNGA 4 cut(s) 204, 416, 693, 714
Hpy188III TCNNGA 5 cut(s) 166, 187, 550, 672, 734
Hpy8I GTNNAC 1 cut(s) 783
Hpy99I CGWCG 2 cut(s) 212, 264
HpyAV CCTTC 5 cut(s) 241, 271, 286, 634, 762
HpyCH4III ACNGT 5 cut(s) 216, 368, 395, 400, 762
HpyCH4IV ACGT 4 cut(s) 27, 63, 90, 195
HpyCH4V TGCA 2 cut(s) 376, 388
HpyF3I CTNAG 4 cut(s) 129, 203, 692, 713
HpySE526I ACGT 4 cut(s) 27, 63, 90, 195
Hsp92I GRCGYC 2 cut(s) 27, 63
Hsp92II CATG 4 cut(s) 392, 527, 668, 825
HspAI GCGC 3 cut(s) 126, 521, 680
KpnI GGTACC 1 cut(s) 504
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 4 cut(s) 199, 411, 438, 730
LmnI GCTCC 2 cut(s) 107, 345
LpnPI CCDG 9 cut(s) 16, 70, 118, 191, 221, 346, 618, 657, 741
MaeI CTAG 1 cut(s) 683
MaeII ACGT 4 cut(s) 27, 63, 90, 195
MaeIII GTNAC 1 cut(s) 59
MalI GATC 4 cut(s) 201, 413, 440, 732
MbiI CCGCTC 1 cut(s) 696
MboI GATC 4 cut(s) 199, 411, 438, 730
MboII GAAGA 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 2 cut(s) 708, 802
MlyI GAGTC 2 cut(s) 241, 626
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 26, 56, 336, 585, 629, 670, 708
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 5 cut(s) 12, 336, 450, 530, 746
MspI CCGG 2 cut(s) 57, 178
MspR9I CCNGG 2 cut(s) 57, 179
MvnI CGCG 1 cut(s) 245
NciI CCSGG 2 cut(s) 57, 179
NdeII GATC 4 cut(s) 199, 411, 438, 730
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 4 cut(s) 392, 527, 668, 825
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 668
PcsI WCGNNNNNNNCGW 4 cut(s) 33, 192, 216, 249
PdmI GAANNNNTTC 1 cut(s) 173
Pfl23II CGTACG 1 cut(s) 211
PkrI GCNGC 3 cut(s) 698, 706, 820
PleI GAGTC 2 cut(s) 240, 625
PpsI GAGTC 2 cut(s) 240, 625
PspLI CGTACG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 484
RsaI GTAC 6 cut(s) 161, 213, 397, 502, 569, 759
RsaNI GTAC 6 cut(s) 160, 212, 396, 501, 568, 758
SaqAI TTAA 5 cut(s) 12, 336, 450, 530, 746
SatI GCNGC 3 cut(s) 697, 705, 819
Sau3AI GATC 4 cut(s) 199, 411, 438, 730
Sau96I GGNCC 1 cut(s) 484
ScaI AGTACT 2 cut(s) 161, 759
SchI GAGTC 2 cut(s) 241, 626
ScrFI CCNGG 2 cut(s) 57, 179
SduI GDGCHC 1 cut(s) 357
SinI GGWCC 1 cut(s) 484
Sse9I AATT 2 cut(s) 708, 802
SsiI CCGC 4 cut(s) 85, 696, 704, 818
SspMI CTAG 1 cut(s) 683
StyD4I CCNGG 2 cut(s) 55, 177
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 5 cut(s) 216, 368, 395, 400, 762
TaiI ACGT 4 cut(s) 30, 66, 93, 198
TaqI TCGA 2 cut(s) 165, 798
TaqII GACCGA 1 cut(s) 501
TasI AATT 2 cut(s) 708, 802
TatI WGTACW 2 cut(s) 159, 757
TauI GCSGC 3 cut(s) 699, 707, 821
Tru1I TTAA 5 cut(s) 12, 336, 450, 530, 746
Tru9I TTAA 5 cut(s) 12, 336, 450, 530, 746
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 419
TspGWI ACGGA 2 cut(s) 248, 491
TspRI CASTG 1 cut(s) 729
VpaK11BI GGWCC 1 cut(s) 484
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 683
ZraI GACGTC 2 cut(s) 28, 64
ZrmI AGTACT 2 cut(s) 161, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.