Rh3BG261600

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014158
Physical Location & Seq
Reverse (-)
25327719 .. 25327991
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG261600.1

Sequence Viewer

Length: 273 bp
ATGGCCGAGACCAAGAAAATGGAGCTGATGAGAAGTACCGGAGCCGGTGACGGGTTCCGGGGGTTGGAACAGTTTCCGAGATCGGAGAGAGTGATCAAGGAAGAAGAGATGATGTGGAATGCGGACAAGTCAGGTGGGTTTTTGGAGAGGTTTGCAGATTTGGAGGGGTTTATACAAGAGCTTGGTGAATTTCCTATGCTACCCAATTTGGATTCTTCTTCTGCTTCAAATTCTCACTTGCTGCATGGTTTTGAAGGCACCCAACTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

90

Amino Acids

10.1

Weight (kDa)

4.7

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 188, 229
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 2 cut(s) 51, 64
AgsI TTSAA 2 cut(s) 228, 254
AluBI AGCT 2 cut(s) 25, 181
AluI AGCT 2 cut(s) 25, 181
Alw26I GTCTC 1 cut(s) 2
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 2 cut(s) 188, 229
Asp700I GAANNNNTTC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 59, 197
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 228
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 2
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 59
BmiI GGNNCC 3 cut(s) 43, 56, 259
BmrFI CCNGG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 64
Bse118I RCCGGY 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 51, 64
BseXI GCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 3 cut(s) 39, 45, 58
BslI CCNNNNNNNGG 2 cut(s) 51, 64
BsmAI GTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 2
Bsp143I GATC 2 cut(s) 80, 93
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 43, 56, 259
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 80, 93
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 99
BstKTI GATC 2 cut(s) 83, 96
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 80, 93
BstSCI CCNGG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 5
Cfr10I RCCGGY 1 cut(s) 44
Csp6I GTAC 1 cut(s) 36
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 1 cut(s) 245
CviJI RGCY 4 cut(s) 5, 25, 44, 181
CviKI_1 RGCY 4 cut(s) 5, 25, 44, 181
CviQI GTAC 1 cut(s) 36
DpnI GATC 2 cut(s) 82, 95
DpnII GATC 2 cut(s) 80, 93
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 2
FaeI CATG 1 cut(s) 248
FaiI YATR 3 cut(s) 173, 197, 246
FatI CATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 39, 45, 58
Hin1II CATG 1 cut(s) 248
HinfI GANTC 1 cut(s) 212
HpaII CCGG 3 cut(s) 39, 45, 58
HphI GGTGA 2 cut(s) 59, 197
Hpy188I TCNGA 2 cut(s) 78, 85
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 155, 244
Hsp92II CATG 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 2 cut(s) 80, 93
LmnI GCTCC 2 cut(s) 22, 41
LpnPI CCDG 4 cut(s) 52, 58, 71, 117
Lsp1109I GCAGC 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 82, 95
MboI GATC 2 cut(s) 80, 93
MboII GAAGA 4 cut(s) 113, 116, 207, 210
MluCI AATT 3 cut(s) 188, 205, 229
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 2 cut(s) 141, 157
MroXI GAANNNNTTC 1 cut(s) 72
MspI CCGG 3 cut(s) 39, 45, 58
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 80, 93
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 3 cut(s) 43, 56, 259
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 47
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 43, 56, 259
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 2 cut(s) 80, 93
ScrFI CCNGG 1 cut(s) 59
SetI ASST 4 cut(s) 27, 136, 152, 183
Sse9I AATT 3 cut(s) 188, 205, 229
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 72
TasI AATT 3 cut(s) 188, 205, 229
TfiI GAWTC 1 cut(s) 212
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 47
XapI RAATTY 2 cut(s) 188, 229
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.