AT3G58000

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014158
Physical Location & Seq
Forward (+)
21474870 .. 21475750
881 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58000.1

Sequence Viewer

Length: 528 bp
ATGGAAGCCACGATCTTCGAGAAAAGAAGAAGCTCGTTATCAAGCATAGCGGTGCACAAACAGTCATACTCGATAACCAAATCAAAGCCAAAGATCCGTATAATTCACATATTTGCTCCGGAGATCATCAAGACCGACGTTGCCAACTTCCGTGAGCTCGTCCAAAGCCTCACCGGCAAACCAGACGACCAGAGAACTTCCAAGGCAAAACCTAGAAGAGATATGCATCGTCTTCATCGTCAAGTCCAAGACATGATCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGAGTTCTGCTTAAACGCAGAAGAGCTCTCGATGACTTGGAACGGTAATAATGGCGCTGGTGAAAGCTCTGGAGGGTTCTTGAATGGTTTGGGAGATTTCGAAGGGTTTATTCAAGAACTTGGTGAATTTCCTTATTTGCCCTTGTCCTCCATTGATGCTTCTGCTTCTTCTAACTCCTCTTCTTCCTCTCATTTACATGGTGGATCAGTTTTCTCAGATCAATTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

175

Amino Acids

19.52

Weight (kDa)

6.16

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 37 - 62 4.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 50
AclWI GGATC 2 cut(s) 88, 508
AcsI RAATTY 1 cut(s) 422
AgsI TTSAA 2 cut(s) 379, 410
AluBI AGCT 4 cut(s) 33, 157, 322, 363
AluI AGCT 4 cut(s) 33, 157, 322, 363
Alw21I GWGCWC 3 cut(s) 57, 159, 324
Alw44I GTGCAC 1 cut(s) 53
AlwI GGATC 2 cut(s) 88, 508
Ama87I CYCGRG 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 118
ApaLI GTGCAC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 422
AspLEI GCGC 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 163, 368, 431
AsuII TTCGAA 1 cut(s) 396
AvaI CYCGRG 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 57
BanII GRGCYC 2 cut(s) 159, 324
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 3 cut(s) 57, 159, 324
BclI TGATCA 2 cut(s) 255, 292
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 354
BglI GCCNNNNNGGC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 281
BmsI GCATC 2 cut(s) 235, 442
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 225
BseAI TCCGGA 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 463
BseSI GKGCMC 1 cut(s) 57
BsiHKAI GWGCWC 3 cut(s) 57, 159, 324
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 119, 174
BsoBI CYCGRG 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 3 cut(s) 57, 159, 324
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 524
BspEI TCCGGA 1 cut(s) 118
BspPI GGATC 2 cut(s) 88, 508
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 63, 341
Bst6I CTCTTC 3 cut(s) 211, 312, 481
BstBI TTCGAA 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 272, 511
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 7 cut(s) 15, 96, 126, 258, 295, 503, 517
BstMBI GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 173
CviAII CATG 2 cut(s) 253, 494
CviJI RGCY 7 cut(s) 8, 33, 88, 157, 168, 322, 363
CviKI_1 RGCY 7 cut(s) 8, 33, 88, 157, 168, 322, 363
DdeI CTNAG 2 cut(s) 272, 511
DpnI GATC 7 cut(s) 14, 95, 125, 257, 294, 502, 516
DpnII GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
Eam1104I CTCTTC 3 cut(s) 211, 312, 481
EarI CTCTTC 3 cut(s) 211, 312, 481
Ecl136II GAGCTC 2 cut(s) 157, 322
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 2 cut(s) 159, 324
Eco53kI GAGCTC 2 cut(s) 157, 322
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 2 cut(s) 157, 322
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 228
EcoT38I GRGCYC 2 cut(s) 159, 324
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 256, 497
FaiI YATR 7 cut(s) 47, 67, 101, 110, 224, 254, 495
FatI CATG 2 cut(s) 252, 493
FbaI TGATCA 2 cut(s) 255, 292
FriOI GRGCYC 2 cut(s) 159, 324
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 352
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 354
HapII CCGG 2 cut(s) 119, 174
HhaI GCGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 256, 497
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HpaII CCGG 2 cut(s) 119, 174
HphI GGTGA 3 cut(s) 163, 368, 431
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 8 cut(s) 19, 119, 130, 296, 325, 366, 376, 410
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 63, 341
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 55, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 272, 511
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 256, 497
HspAI GCGC 1 cut(s) 351
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 2 cut(s) 255, 292
Kzo9I GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 132, 187, 195, 203, 339, 351
LweI GCATC 2 cut(s) 235, 442
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 138
MalI GATC 7 cut(s) 14, 95, 125, 257, 294, 502, 516
MboI GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
MboII GAAGA 8 cut(s) 7, 39, 224, 228, 329, 456, 468, 471
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 57, 159, 324
MluCI AATT 3 cut(s) 102, 422, 518
MnlI CCTC 5 cut(s) 179, 362, 454, 484, 493
Mph1103I ATGCAT 1 cut(s) 228
MroI TCCGGA 1 cut(s) 118
MseI TTAA 2 cut(s) 308, 526
MslI CAYNNNNRTG 2 cut(s) 50, 492
MspI CCGG 2 cut(s) 119, 174
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
NlaIII CATG 2 cut(s) 256, 497
NsiI ATGCAT 1 cut(s) 228
NspV TTCGAA 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 235
Psp124BI GAGCTC 2 cut(s) 159, 324
PsuI RGATCY 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 50, 492
SacI GAGCTC 2 cut(s) 159, 324
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 308, 526
Sau3AI GATC 7 cut(s) 12, 93, 123, 255, 292, 500, 514
SduI GDGCHC 3 cut(s) 57, 159, 324
SetI ASST 6 cut(s) 35, 141, 159, 214, 324, 365
SfaNI GCATC 2 cut(s) 235, 442
SfuI TTCGAA 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 50, 492
Sse9I AATT 3 cut(s) 102, 422, 518
SsiI CCGC 1 cut(s) 50
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 2 cut(s) 159, 324
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 63, 341
TaiI ACGT 1 cut(s) 141
TaqI TCGA 4 cut(s) 18, 71, 326, 396
TaqII GACCGA 1 cut(s) 149
TasI AATT 3 cut(s) 102, 422, 518
Tru1I TTAA 2 cut(s) 308, 526
Tru9I TTAA 2 cut(s) 308, 526
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 3 cut(s) 86, 140, 278
VneI GTGCAC 1 cut(s) 53
XapI RAATTY 1 cut(s) 422
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.