FvH4_6g22390

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014158
Physical Location & Seq
Reverse (-)
16062199 .. 16063342
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22390.t1

Sequence Viewer

Length: 555 bp
ATGGAGGAGATGATGATGAGCAAGAAACAAACTTGGGGAACAAGCTCAAATGCTTTGGCCGTTCACAGAGACTCGCAAACAATATCAAAACCAAAACCCAAAATCAGAATCATCCACATATTTGCACCCGAGATCATCAAGACCGACGTGGCCAATTTCCGGGAACTAGTCCAGAGACTCACCGGAAAGCCATCCGACAACGGTTGTAGCAACAAGAAGAAGAGGGCGCAAGGAGTTTCACGAAGAGCGTCGGAAGCTCATCATCAGAGAAGTGCATTCATGGCCGAGGCCAAGAAAATGGAGCTGCTGAGAAGTAACGGAGGCGGTTCCGGGTTCCGGGGTTTCGAGCAGCTTCAGAGATCGGAGAGAGTGATCAAGGAAGAAGAGATGATGTGGAATGCAGAGAAGTCAGGTGGGTTTTTGGAGAGGTTTGCAGATTTGGAAGGGTTTATCCAAGAGCTTGGTGAATATCCTATGCTGCCCAATTTGGAGTCTGCTTCTGCTGCTCCAAATTCTCACTTGCTGCATGGTTTTGAAGGCACCCAACTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

185

Amino Acids

20.68

Weight (kDa)

9.27

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 40 - 66 1.1e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AciI CCGC 1 cut(s) 324
AcoI YGGCCR 3 cut(s) 57, 150, 282
AcsI RAATTY 1 cut(s) 511
AcuI CTGAAG 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 159, 336
AgsI TTSAA 1 cut(s) 536
AhlI ACTAGT 1 cut(s) 166
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 5 cut(s) 45, 257, 304, 352, 460
AluI AGCT 5 cut(s) 45, 257, 304, 352, 460
Alw26I GTCTC 2 cut(s) 63, 169
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 4 cut(s) 57, 150, 282, 288
ApeKI GCWGC 5 cut(s) 304, 349, 478, 503, 523
ApoI RAATTY 1 cut(s) 511
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 3 cut(s) 161, 331, 338
AsuHPI GGTGA 2 cut(s) 172, 476
AvaI CYCGRG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 539
BbvI GCAGC 5 cut(s) 291, 361, 465, 490, 510
BccI CCATC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 44
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 3 cut(s) 161, 331, 338
BcoDI GTCTC 2 cut(s) 63, 169
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 1 cut(s) 167
BisI GCNGC 5 cut(s) 305, 350, 479, 504, 524
BlsI GCNGC 5 cut(s) 306, 351, 480, 505, 525
Bme1390I CCNGG 3 cut(s) 161, 331, 338
BmeT110I CYCGRG 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 148
BmiI GGNNCC 3 cut(s) 328, 335, 541
BmrFI CCNGG 3 cut(s) 161, 331, 338
BpuMI CCSGG 3 cut(s) 161, 331, 338
BsaJI CCNNGG 2 cut(s) 285, 337
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 336
BseDI CCNNGG 2 cut(s) 285, 337
BseGI GGATG 2 cut(s) 111, 191
BseLI CCNNNNNNNGG 2 cut(s) 159, 336
BseMII CTCAG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 5 cut(s) 291, 361, 465, 490, 510
BshFI GGCC 4 cut(s) 59, 152, 284, 290
BshNI GGYRCC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 4 cut(s) 160, 183, 330, 337
BslI CCNNNNNNNGG 2 cut(s) 159, 336
BsmAI GTCTC 2 cut(s) 63, 169
BsmI GAATGC 2 cut(s) 275, 403
BsnI GGCC 4 cut(s) 59, 152, 284, 290
BsoBI CYCGRG 1 cut(s) 128
Bsp143I GATC 3 cut(s) 132, 359, 372
BspACI CCGC 1 cut(s) 324
BspANI GGCC 4 cut(s) 59, 152, 284, 290
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 328, 335, 541
BspQI GCTCTTC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 539
BssECI CCNNGG 2 cut(s) 285, 337
BssMI GATC 3 cut(s) 132, 359, 372
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 3 cut(s) 215, 238, 378
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 111, 191
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 135, 362, 375
BstMAI GTCTC 2 cut(s) 63, 169
BstMBI GATC 3 cut(s) 132, 359, 372
BstMWI GCNNNNNNNGC 3 cut(s) 254, 281, 503
BstSCI CCNGG 3 cut(s) 159, 329, 336
BstV1I GCAGC 5 cut(s) 291, 361, 465, 490, 510
BstXI CCANNNNNNTGG 2 cut(s) 298, 461
BsuRI GGCC 4 cut(s) 59, 152, 284, 290
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 111, 191
CfoI GCGC 1 cut(s) 229
CseI GACGC 1 cut(s) 237
CviAII CATG 2 cut(s) 280, 527
DdeI CTNAG 1 cut(s) 308
DpnI GATC 3 cut(s) 134, 361, 374
DpnII GATC 3 cut(s) 132, 359, 372
EaeI YGGCCR 3 cut(s) 57, 150, 282
Eam1104I CTCTTC 3 cut(s) 215, 238, 378
EarI CTCTTC 3 cut(s) 215, 238, 378
Eco57I CTGAAG 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 128
FaeI CATG 2 cut(s) 283, 530
FaiI YATR 4 cut(s) 119, 281, 476, 528
FatI CATG 2 cut(s) 279, 526
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 305, 350, 479, 504, 524
FokI GGATG 2 cut(s) 98, 178
Fsp4HI GCNGC 5 cut(s) 305, 350, 479, 504, 524
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 228
GluI GCNGC 5 cut(s) 305, 350, 479, 504, 524
HaeIII GGCC 4 cut(s) 59, 152, 284, 290
HapII CCGG 4 cut(s) 160, 183, 330, 337
HgaI GACGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 229
Hin1II CATG 2 cut(s) 283, 530
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 4 cut(s) 71, 108, 177, 491
HpaII CCGG 4 cut(s) 160, 183, 330, 337
HphI GGTGA 2 cut(s) 172, 476
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 6 cut(s) 107, 196, 253, 267, 357, 364
Hpy188III TCNNGA 3 cut(s) 139, 172, 240
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 2 cut(s) 149, 253
HpyAV CCTTC 2 cut(s) 437, 530
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 5 cut(s) 125, 275, 401, 434, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 281, 503
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 283, 530
HspAI GCGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 3 cut(s) 132, 359, 372
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 301, 511
LpnPI CCDG 6 cut(s) 173, 185, 196, 343, 350, 396
Lsp1109I GCAGC 5 cut(s) 291, 361, 465, 490, 510
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 314
MalI GATC 3 cut(s) 134, 361, 374
MboI GATC 3 cut(s) 132, 359, 372
MboII GAAGA 5 cut(s) 229, 232, 255, 392, 395
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 3 cut(s) 154, 484, 511
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 3 cut(s) 65, 171, 500
MmeI TCCRAC 2 cut(s) 219, 231
MnlI CCTC 4 cut(s) 216, 280, 314, 420
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 4 cut(s) 160, 183, 330, 337
MspR9I CCNGG 3 cut(s) 161, 331, 338
Mva1269I GAATGC 2 cut(s) 275, 403
MwoI GCNNNNNNNGC 3 cut(s) 254, 281, 503
NciI CCSGG 3 cut(s) 161, 331, 338
NdeII GATC 3 cut(s) 132, 359, 372
NlaIII CATG 2 cut(s) 283, 530
NlaIV GGNNCC 3 cut(s) 328, 335, 541
NmeAIII GCCGAG 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 238
PctI GAATGC 2 cut(s) 275, 403
PfeI GAWTC 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 5 cut(s) 306, 351, 480, 505, 525
PleI GAGTC 3 cut(s) 65, 171, 499
PpsI GAGTC 3 cut(s) 65, 171, 499
PspN4I GGNNCC 3 cut(s) 328, 335, 541
SapI GCTCTTC 1 cut(s) 238
SatI GCNGC 5 cut(s) 305, 350, 479, 504, 524
Sau3AI GATC 3 cut(s) 132, 359, 372
SchI GAGTC 3 cut(s) 65, 171, 500
ScrFI CCNGG 3 cut(s) 161, 331, 338
SetI ASST 8 cut(s) 47, 150, 259, 306, 354, 415, 431, 462
SpeI ACTAGT 1 cut(s) 166
Sse9I AATT 3 cut(s) 154, 484, 511
SsiI CCGC 1 cut(s) 324
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 3 cut(s) 159, 329, 336
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 345
TaqII GACCGA 1 cut(s) 158
TasI AATT 3 cut(s) 154, 484, 511
TfiI GAWTC 1 cut(s) 108
TseI GCWGC 5 cut(s) 304, 349, 478, 503, 523
TspDTI ATGAA 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 333
XapI RAATTY 1 cut(s) 511
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.