Prupe.7G076600_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014158
Physical Location & Seq
Forward (+)
11329895 .. 11330935
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G076600.1

Sequence Viewer

Length: 513 bp
ATGGAGGAGACATTAACCAAGAAGCAAACTTGTTGCTCAAATTTACCAGCAGCCCTAGCCATCCACAGAGACTCACAAACAATATCAAAAGCCAAGCCCAAAATTCGAATCATTCACATATTTGCACCAGAGATCATCAAGACAGACGTGGCAAACTTCAGGGAGTTAGTGCAGAGACTCACAGGAAAACCATCTGAAAATGGCTGCAGCAAGAAGAAGAATAAGAGGCCAAGGAATTTAATTCCCAGCAGCAGAGAAGAACCCAAGAAAAATGCATCATCAATGGCTGACAAGCTGGAGCTAATGAGAACTGGGTACATGGGTTTGGATCAATCAAGAGAGAGAGTCAAGGAAGAGGGGATGATGTGGAATGCAGAGAACTCAGGTGGGTTCTTGGAGAGATTTGCAGATTTGGAAGGGTTTATTCAGGAATTTGGTGAATTTCCTCTGCTACCCAATTTGGATGCCTCAAATTCTCACCTGCATGGTTTTGAAGGAACCCAACTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

171

Amino Acids

19.19

Weight (kDa)

8.77

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42140 AT3G58000
fragaria_vesca FvH4_6g22390
malus_domestica MD12G1057500.v1.1 MD14G1058100.v1.1
prunus_persica Prupe.7G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479721
rosa_laevigata RLG00000023546
rosa_multiflora Rmu_sc0003755.1_g000010 Rmu_sc0031395.1_g000004
rosa_roxburghii Rroxscaffold_6G00402040
rosa_rugosa Rorug03G0177900
rosa_samantha Rh3BG261600 Rh3CG258700 Rh3DG254900
rosa_wichuraiana Rw0G015320 Rw3G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 489
Acc36I ACCTGC 1 cut(s) 489
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 6 cut(s) 40, 102, 235, 431, 440, 472
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 1 cut(s) 494
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 2 cut(s) 295, 301
AluI AGCT 2 cut(s) 295, 301
Alw26I GTCTC 3 cut(s) 2, 63, 169
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 4 cut(s) 50, 204, 207, 249
ApoI RAATTY 6 cut(s) 40, 102, 235, 431, 440, 472
AsuHPI GGTGA 2 cut(s) 449, 470
AsuII TTCGAA 1 cut(s) 106
BaeI ACNNNNGTAYC 2 cut(s) 307, 340
BbvI GCAGC 4 cut(s) 62, 191, 219, 261
BccI CCATC 2 cut(s) 68, 199
BcoDI GTCTC 3 cut(s) 2, 63, 169
BfaI CTAG 2 cut(s) 56, 511
BfmI CTRYAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 489
BisI GCNGC 4 cut(s) 51, 205, 208, 250
BlsI GCNGC 4 cut(s) 52, 206, 209, 251
BmgBI CACGTC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 499
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 284, 454
BmuI ACTGGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 3 cut(s) 60, 366, 469
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 4 cut(s) 62, 191, 219, 261
BseYI CCCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 229
BsmAI GTCTC 3 cut(s) 2, 63, 169
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 1 cut(s) 229
Bsp119I TTCGAA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 132, 328
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 489
BspPI GGATC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 2 cut(s) 132, 328
BssT1I CCWWGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 3 cut(s) 60, 366, 469
BstKTI GATC 2 cut(s) 135, 331
BstMAI GTCTC 3 cut(s) 2, 63, 169
BstMBI GATC 2 cut(s) 132, 328
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 62, 191, 219, 261
BsuRI GGCC 1 cut(s) 229
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 60, 366, 469
BveI ACCTGC 1 cut(s) 489
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 319, 485
CviJI RGCY 9 cut(s) 53, 59, 92, 97, 204, 229, 287, 295, 301
CviKI_1 RGCY 9 cut(s) 53, 59, 92, 97, 204, 229, 287, 295, 301
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 382
DpnI GATC 2 cut(s) 134, 330
DpnII GATC 2 cut(s) 132, 328
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 322, 488
FaiI YATR 3 cut(s) 119, 320, 486
FatI CATG 2 cut(s) 318, 484
Fnu4HI GCNGC 4 cut(s) 51, 205, 208, 250
FokI GGATG 3 cut(s) 47, 373, 476
Fsp4HI GCNGC 4 cut(s) 51, 205, 208, 250
FspBI CTAG 2 cut(s) 56, 511
GluI GCNGC 4 cut(s) 51, 205, 208, 250
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 229
Hin1II CATG 2 cut(s) 322, 488
HinfI GANTC 4 cut(s) 71, 108, 177, 345
HphI GGTGA 2 cut(s) 449, 470
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 139, 336, 428
HpyAV CCTTC 2 cut(s) 410, 488
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 7 cut(s) 125, 172, 207, 275, 374, 407, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 322, 488
Kzo9I GATC 2 cut(s) 132, 328
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 4 cut(s) 62, 191, 219, 261
LweI GCATC 2 cut(s) 284, 454
MaeI CTAG 2 cut(s) 56, 511
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 134, 330
MboI GATC 2 cut(s) 132, 328
MboII GAAGA 4 cut(s) 226, 229, 269, 365
MluCI AATT 8 cut(s) 40, 102, 235, 240, 431, 440, 457, 472
MlyI GAGTC 3 cut(s) 65, 171, 354
MnlI CCTC 4 cut(s) 219, 349, 456, 478
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 2 cut(s) 14, 239
MslI CAYNNNNRTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 2 cut(s) 132, 328
NlaIII CATG 2 cut(s) 322, 488
NlaIV GGNNCC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 277
NspV TTCGAA 1 cut(s) 106
PaqCI CACCTGC 1 cut(s) 489
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 52, 206, 209, 251
PleI GAGTC 3 cut(s) 65, 171, 353
PpsI GAGTC 3 cut(s) 65, 171, 353
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 499
PstI CTGCAG 1 cut(s) 209
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 2 cut(s) 14, 239
SatI GCNGC 4 cut(s) 51, 205, 208, 250
Sau3AI GATC 2 cut(s) 132, 328
SchI GAGTC 3 cut(s) 65, 171, 354
SetI ASST 5 cut(s) 150, 297, 303, 388, 483
SfaNI GCATC 2 cut(s) 284, 454
SfcI CTRYAG 1 cut(s) 205
SfuI TTCGAA 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 483
Sse9I AATT 8 cut(s) 40, 102, 235, 240, 431, 440, 457, 472
SspMI CTAG 2 cut(s) 56, 511
StyI CCWWGG 1 cut(s) 230
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 106
TasI AATT 8 cut(s) 40, 102, 235, 240, 431, 440, 457, 472
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 2 cut(s) 14, 239
Tru9I TTAA 2 cut(s) 14, 239
TseI GCWGC 4 cut(s) 50, 204, 207, 249
XapI RAATTY 6 cut(s) 40, 102, 235, 431, 440, 472
XspI CTAG 2 cut(s) 56, 511
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.