AT2G42230

Tubulin binding cofactor C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005065
Physical Location & Seq
Reverse (-)
17593411 .. 17596665
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42230.2

Sequence Viewer

Length: 1260 bp
ATGACGGAAGAGCTCATCGACCAATCACCACCACCTGACCCAGACCCGATTCAAAATTCGAATTTAATAATCCACCCAAGACGTGTTCCTTTCGAGCACGGCCTTCTTCCGATCCAGAAGCTCGTTTTTACCGACCCGATTCAAACTCTAGCTCCGATCAAGCAAAAGTTAGCTTCTTTGGCGACGAATCATCGCGTCGGATCTGCTGCCATTTCCGATGCACTCTCGATCTCCGATGACCATGCGCGCCTCGTTCTCGAAACTCTCTCTTCGGTGCTCCATTGCGAGACTGACCCATTGGTTTTGGCCAAACCTGAGGAAGTTGATTCCGTGGGAGCTGATTTGAGGGATCTGATATTGTTTCTCTACATTCAATCGTATAAGAAGTTATTGCCTAGGACGCATAAAGACTCTGCTTCTGTGGCTGATGTTTGGCCTTCGACTTCTGCTTTTGATGGATACTTGTCGGCATTATCTCCAATTCAGCTTGTTCGTAGCAACAGCCGTCGGTTTATGCCATCACCGACAGATGAAGAAGCTCATCAATTATCGTATCTGCAAAAGCACATTGCAAATATTATTTCTCTCCTTGCAGAGCCTGTGGAGGGACAAGGAGATGATTCTTTGGTCCTGTCTATGGAGAGTTTGGAGCACATTGGGTTTCTTGTTCATTATGGTGATAAGGGATTTGATGTACCTTCTTTAAGCCAAGCTACTCCTTTTTTTGCGAATTCTGATCCTGATATGCCCGCTGTCCCCGTTCCTGCTTCCCAAGTGAATGATTGGCTTCTCAAAGACATAGCTTCCGCCTTAGAAAGCATTTCTAACAGAATCTCTGGGAAAGAAAATGGGGCATCTAATGCCTCTGATCAGAATGCTGCAATGGCTGATTCTAGTGTAGCTCTTAATAAAGTTTCATCTAACGACAGAGGTCCATGTATTATTGAGGGAGTCTCTAAGACCTCACTTTTCAAGCAGGCTTCTGATCTTAAGGGTAGATCAGTGAAGGTTGCCAATTGCCATGATTCTGTTATTTATCTGTTAGCGCCATTGAGATATGCAACTGTGTATGGGTGTTCTGATTCTACTATCGTTCTGGGAGCTGCTGGCAAGGCAGTAAAAGTTGAGCATTGTGAGAGAGTTCATGTGATTGTAGCTACCAAACGAATTTGCATCGCCAATTGCCGTGAATGTGTGTTCTTTTTGGGAGTCAATCAGCGACCTCTTATAGTTGGTGATAACCACAAACTACAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

419

Amino Acids

45.45

Weight (kDa)

5.59

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCC PF07986 332 - 447 9e-33 Tubulin binding cofactor C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 195, 247
AciI CCGC 2 cut(s) 750, 807
AclWI GGATC 4 cut(s) 106, 208, 357, 731
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 4 cut(s) 55, 61, 730, 1167
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 2 cut(s) 605, 637
AflII CTTAAG 1 cut(s) 989
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 4 cut(s) 53, 143, 374, 973
AjiI CACGTC 1 cut(s) 83
Alw21I GWGCWC 4 cut(s) 15, 99, 279, 654
Alw26I GTCTC 2 cut(s) 281, 958
AlwI GGATC 4 cut(s) 106, 208, 357, 731
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 3 cut(s) 100, 306, 434
ApeKI GCWGC 3 cut(s) 206, 878, 1103
ApoI RAATTY 4 cut(s) 55, 61, 730, 1167
AspA2I CCTAGG 1 cut(s) 395
AspLEI GCGC 3 cut(s) 247, 249, 1048
AspS9I GGNCC 2 cut(s) 628, 932
AsuHPI GGTGA 4 cut(s) 18, 513, 689, 1247
AsuII TTCGAA 1 cut(s) 59
AvaII GGWCC 2 cut(s) 628, 932
AvrII CCTAGG 1 cut(s) 395
AxyI CCTNAGG 1 cut(s) 315
BalI TGGCCA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 4 cut(s) 15, 99, 279, 654
BbvI GCAGC 3 cut(s) 193, 865, 1090
BccI CCATC 2 cut(s) 449, 526
BceAI ACGGC 3 cut(s) 115, 489, 1170
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciVI GTATCC 1 cut(s) 452
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 281, 958
BfaI CTAG 3 cut(s) 149, 396, 894
BfmI CTRYAG 1 cut(s) 1250
BfoI RGCGCY 1 cut(s) 1049
BfrI CTTAAG 1 cut(s) 989
BfuI GTATCC 1 cut(s) 452
BisI GCNGC 3 cut(s) 207, 879, 1104
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 3 cut(s) 208, 880, 1105
Bme18I GGWCC 2 cut(s) 628, 932
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 628, 932
BmsI GCATC 3 cut(s) 208, 863, 1182
BoxI GACNNNNGTC 1 cut(s) 930
BplI GAGNNNNNCTC 2 cut(s) 938, 970
Bpu14I TTCGAA 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 330, 395
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 637
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 3 cut(s) 280, 567, 888
BseDI CCNNGG 2 cut(s) 330, 395
BseLI CCNNNNNNNGG 2 cut(s) 605, 637
BseMI GCAATG 3 cut(s) 280, 567, 888
BseMII CTCAG 1 cut(s) 306
BsePI GCGCGC 1 cut(s) 245
BseXI GCAGC 3 cut(s) 193, 865, 1090
Bsh1236I CGCG 2 cut(s) 195, 247
BshFI GGCC 3 cut(s) 102, 308, 436
BsiHKAI GWGCWC 4 cut(s) 15, 99, 279, 654
BslFI GGGAC 2 cut(s) 621, 740
BslI CCNNNNNNNGG 2 cut(s) 605, 637
BsmAI GTCTC 2 cut(s) 281, 958
BsmFI GGGAC 2 cut(s) 621, 740
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 3 cut(s) 102, 308, 436
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 4 cut(s) 15, 99, 279, 654
Bsp143I GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
BspACI CCGC 2 cut(s) 750, 807
BspANI GGCC 3 cut(s) 102, 308, 436
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 2 cut(s) 195, 247
BspHI TCATGA 1 cut(s) 1256
BspPI GGATC 4 cut(s) 106, 208, 357, 731
BspQI GCTCTTC 1 cut(s) 3
BspT104I TTCGAA 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 989
BsrDI GCAATG 3 cut(s) 280, 567, 888
BssECI CCNNGG 2 cut(s) 330, 395
BssHII GCGCGC 1 cut(s) 245
BssMI GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 2 cut(s) 1066, 1254
Bst6I CTCTTC 2 cut(s) 3, 274
BstAFI CTTAAG 1 cut(s) 989
BstAPI GCANNNNNTGC 1 cut(s) 860
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 247, 750, 978, 1108
BstDEI CTNAG 3 cut(s) 315, 811, 957
BstDSI CCRYGG 1 cut(s) 330
BstFNI CGCG 2 cut(s) 195, 247
BstH2I RGCGCY 1 cut(s) 1049
BstHHI GCGC 3 cut(s) 247, 249, 1048
BstKTI GATC 9 cut(s) 114, 159, 203, 231, 352, 739, 871, 988, 1001
BstMAI GTCTC 2 cut(s) 281, 958
BstMBI GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
BstMWI GCNNNNNNNGC 6 cut(s) 179, 400, 422, 860, 884, 1112
BstPAI GACNNNNGTC 1 cut(s) 930
BstSFI CTRYAG 1 cut(s) 1250
BstUI CGCG 2 cut(s) 195, 247
BstV1I GCAGC 3 cut(s) 193, 865, 1090
BstX2I RGATCY 2 cut(s) 200, 349
BstYI RGATCY 2 cut(s) 200, 349
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 3 cut(s) 102, 308, 436
BtgI CCRYGG 1 cut(s) 330
BtgZI GCGATG 2 cut(s) 176, 1159
BtrI CACGTC 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 1008
Cac8I GCNNGC 4 cut(s) 247, 750, 978, 1108
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 1256
CfoI GCGC 3 cut(s) 247, 249, 1048
Cfr13I GGNCC 2 cut(s) 628, 932
CseI GACGC 2 cut(s) 184, 409
Csp6I GTAC 1 cut(s) 695
CviAII CATG 5 cut(s) 242, 936, 1022, 1145, 1257
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 3 cut(s) 315, 811, 957
DpnI GATC 9 cut(s) 113, 158, 202, 230, 351, 738, 870, 987, 1000
DpnII GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 3, 274
EarI CTCTTC 2 cut(s) 3, 274
EciI GGCGGA 1 cut(s) 796
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 628, 932
Eco53kI GAGCTC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 5 cut(s) 245, 939, 1025, 1148, 1260
FaqI GGGAC 2 cut(s) 621, 740
FatI CATG 5 cut(s) 241, 935, 1021, 1144, 1256
FauI CCCGC 1 cut(s) 757
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 3 cut(s) 207, 879, 1104
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 207, 879, 1104
FspBI CTAG 3 cut(s) 149, 396, 894
GlaI GCGC 3 cut(s) 246, 248, 1047
GluI GCNGC 3 cut(s) 207, 879, 1104
HaeII RGCGCY 1 cut(s) 1049
HaeIII GGCC 3 cut(s) 102, 308, 436
HgaI GACGC 2 cut(s) 184, 409
HhaI GCGC 3 cut(s) 247, 249, 1048
Hin1II CATG 5 cut(s) 245, 939, 1025, 1148, 1260
Hin6I GCGC 3 cut(s) 245, 247, 1046
HinP1I GCGC 3 cut(s) 245, 247, 1046
HphI GGTGA 4 cut(s) 18, 513, 689, 1247
Hpy188III TCNNGA 5 cut(s) 115, 226, 257, 740, 1257
Hpy99I CGWCG 3 cut(s) 187, 200, 510
HpyAV CCTTC 4 cut(s) 113, 447, 708, 1000
HpyCH4III ACNGT 2 cut(s) 1066, 1254
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 7 cut(s) 221, 559, 572, 593, 881, 1061, 1173
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 400, 422, 860, 884, 1112
HpyF3I CTNAG 3 cut(s) 315, 811, 957
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 5 cut(s) 245, 939, 1025, 1148, 1260
HspAI GCGC 3 cut(s) 245, 247, 1046
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 5 cut(s) 157, 282, 335, 649, 1100
Lsp1109I GCAGC 3 cut(s) 193, 865, 1090
LweI GCATC 3 cut(s) 208, 863, 1182
MaeI CTAG 3 cut(s) 149, 396, 894
MaeII ACGT 1 cut(s) 82
MalI GATC 9 cut(s) 113, 158, 202, 230, 351, 738, 870, 987, 1000
MboI GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
MboII GAAGA 4 cut(s) 20, 98, 261, 545
MfeI CAATTG 2 cut(s) 1015, 1180
MflI RGATCY 2 cut(s) 200, 349
MhlI GDGCHC 4 cut(s) 15, 99, 279, 654
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 8 cut(s) 55, 61, 480, 545, 730, 1015, 1167, 1180
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 3 cut(s) 404, 960, 1218
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 9 cut(s) 260, 310, 339, 598, 874, 923, 940, 973, 1233
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 4 cut(s) 65, 704, 906, 990
MslI CAYNNNNRTG 1 cut(s) 675
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 752
MspCI CTTAAG 1 cut(s) 989
MunI CAATTG 2 cut(s) 1015, 1180
Mva1269I GAATGC 1 cut(s) 880
MvnI CGCG 2 cut(s) 195, 247
MwoI GCNNNNNNNGC 6 cut(s) 179, 400, 422, 860, 884, 1112
NdeII GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
NlaIII CATG 5 cut(s) 245, 939, 1025, 1148, 1260
NspV TTCGAA 1 cut(s) 59
PagI TCATGA 1 cut(s) 1256
PauI GCGCGC 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 9 cut(s) 49, 139, 187, 326, 620, 831, 890, 1025, 1082
PkrI GCNGC 3 cut(s) 208, 880, 1105
PleI GAGTC 3 cut(s) 404, 959, 1217
PpsI GAGTC 3 cut(s) 404, 959, 1217
PshAI GACNNNNGTC 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 628, 932
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 200, 349
PteI GCGCGC 1 cut(s) 245
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
RseI CAYNNNNRTG 1 cut(s) 675
SacI GAGCTC 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 4 cut(s) 65, 704, 906, 990
SatI GCNGC 3 cut(s) 207, 879, 1104
Sau3AI GATC 9 cut(s) 111, 156, 200, 228, 349, 736, 868, 985, 998
Sau96I GGNCC 2 cut(s) 628, 932
SchI GAGTC 3 cut(s) 404, 960, 1218
SduI GDGCHC 4 cut(s) 15, 99, 279, 654
SfaNI GCATC 3 cut(s) 208, 863, 1182
SfcI CTRYAG 1 cut(s) 1250
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 2 cut(s) 628, 932
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
Sse9I AATT 8 cut(s) 55, 61, 480, 545, 730, 1015, 1167, 1180
SsiI CCGC 2 cut(s) 750, 807
SspI AATATT 1 cut(s) 577
SspMI CTAG 3 cut(s) 149, 396, 894
SstI GAGCTC 1 cut(s) 15
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 1066, 1254
TaiI ACGT 1 cut(s) 85
TaqI TCGA 6 cut(s) 18, 59, 93, 227, 258, 440
TasI AATT 8 cut(s) 55, 61, 480, 545, 730, 1015, 1167, 1180
TfiI GAWTC 9 cut(s) 49, 139, 187, 326, 620, 831, 890, 1025, 1082
Tru1I TTAA 4 cut(s) 65, 704, 906, 990
Tru9I TTAA 4 cut(s) 65, 704, 906, 990
TscAI CASTG 1 cut(s) 1008
TseI GCWGC 3 cut(s) 206, 878, 1103
TspDTI ATGAA 4 cut(s) 546, 659, 906, 1133
TspGWI ACGGA 2 cut(s) 20, 319
TspRI CASTG 1 cut(s) 1008
Vha464I CTTAAG 1 cut(s) 989
VpaK11BI GGWCC 2 cut(s) 628, 932
XapI RAATTY 4 cut(s) 55, 61, 730, 1167
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 3 cut(s) 149, 396, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.