Rroxscaffold_6G00401560

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005065
Physical Location & Seq
Forward (+)
23944996 .. 23952203
7208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401560.1

Sequence Viewer

Length: 1695 bp
ATGAGCGAGCCAATTGAGCCTTCAACGTCGTCGTCTTCGACCAAAGACCCCGCCTTTCTGATTCACCCTCGGCGCGAGCCATTCGAGCATGGCTTGCTCTCCATCCCCAAGCTCATCTTCGCCGACCCCACGCAAACCCTAGTCCCTCTCAAGCACAAGCTAATCGAGCAATCGCCGAGCCACCGGGTCAACGCCGCAGCGATCTCCGAGTCGCTGCAGATCTCCATTGATCTCGCCAGGCTCGTCCTCGATACCCTAGCCTCGGTGCTTCATTTGGAGTCGGACCCGCTCGTCCAGGCCAAGCCCGACGGGGTTGATGAGGTCGGAGCCGATGTGCATGATCTGGTCTTGTTCCTCTACATTCAGTCCTACAAGAAATTGCTGCCCAGAACGCACAAGGATTCCGCCGCCGTTGCCGATGTTTGGCCGTCGACGTCGGCTTTCGACGGGTATTTGTCGGCTTTGTCGCCGTTGCAGCTTGTGCGGAGCAATAGCCGTCGGTTTGTGCCATCACAGGCTGATGAAGAGGCCCATCAGTTATCATATCTGCAAAAGCATTTGGGTAACCTGGTCTCACTGTTAGCTGAACCTGTGGAGGGGGAAGGCGAAGAATCTCTGGTTTTAACCATGGAAAGGTTAGAGCACCTTGGGTTTCTGATTCAATTTGGCGATAAAGGATCTGAAAGCGGTCACTTGAGCCAATATGCTCCTTTCTTTGCAAATTCAGATCCTGATATGCCTGCCGTTCCTGTTCCTGCCGCACAAGTTCACGAGTGGATTTTGAATAATATAGCTTCTGCTCTGGAAAATATTTCTGAAAGAATTTCTCCTAAAGAAAATGGCCTGCCCAGTTCCTCAGATCAAGATGTTCCCATGGCTGATGCCTGCACGAGTTCTACCAAGGGCTCAACATGTGTTAGAGGTTCAAGTTTTATCGAAGGGATCTCTAAATCATCACTCGTAAGGCATGCATCTGATCTTAAAGGTCCTTCTGTAAAGGTTTTAAACTGCCATGATTCAGTGATCTATATATTAGCACCTCTGAGATATGCCACAGTCTATGGATGCTCTGATGCTACAATTGTCCTTGGAGCTGTTGGAAAGGCCGTAAGAATTGAACACTGTGAGCGAGTTCATGTGATCACAGCAGCAAATCGAATCTGCATTGCTAACTGCCGCGAATGCATGTTTTTTCTCGGGGTAAACCAACGACCACTTATTGTTGGGGATAACCATAAGCTGCAGGTGGCACCATACAATACATTTTACAGTCAGTTGGAGGAGCACTTGAGTGAAGTTGGCATTGATGCTACTATCAATAGATGGAATGAACCCCTGCCTCTCGGAGCGGTTGATCCACATGATTCACTATCTCATCCAGCAGGTGTCTCTGATGCTCAGGCTGAGTCTGCTACTCGCGTAGACCCTGACCAGTTCACAACCTTTTTGATTCCAAACTGGTGTGGAGGTGAACCACATGGCTCCACAAAGGTCAATCCATTTCCATTACCAGAAGCTTATGTGGAATCTCAAGACAGAAATAAGAATTTAGGGGAGGTGAAGCAATTATTGAGAGAAGCACCCCTTGAGGACAATAGAAAACGGGAATTATCAACTGCTCTTCACGTATATTTTAAAGACTGGTTGTATGCTTCTGGAAACATACGACAGCTTTACTGCCTACAAGGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

564

Amino Acids

61.88

Weight (kDa)

5.34

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCC PF07986 331 - 445 7.3e-32 Tubulin binding cofactor C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1234, 1373
AasI GACNNNNNNGTC 1 cut(s) 290
AatII GACGTC 1 cut(s) 437
Acc36I ACCTGC 2 cut(s) 1234, 1373
AccB1I GGYRCC 1 cut(s) 1249
AccBSI CCGCTC 2 cut(s) 289, 1349
AccI GTMKAC 2 cut(s) 431, 1422
AccII CGCG 3 cut(s) 75, 1179, 1419
AclWI GGATC 4 cut(s) 685, 722, 950, 1349
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 3 cut(s) 721, 822, 1546
AcyI GRCGYC 1 cut(s) 434
AfiI CCNNNNNNNGG 4 cut(s) 262, 423, 596, 633
AflIII ACRYGT 1 cut(s) 911
AgsI TTSAA 5 cut(s) 24, 662, 784, 927, 1118
AjnI CCWGG 3 cut(s) 236, 294, 567
AjuI GAANNNNNNNTTGG 3 cut(s) 36, 101, 133
AleI CACNNNNGTG 1 cut(s) 1290
AluBI AGCT 9 cut(s) 112, 160, 478, 584, 794, 1094, 1240, 1517, 1672
AluI AGCT 9 cut(s) 112, 160, 478, 584, 794, 1094, 1240, 1517, 1672
Alw21I GWGCWC 2 cut(s) 645, 1287
Alw26I GTCTC 2 cut(s) 577, 1393
AlwI GGATC 4 cut(s) 685, 722, 950, 1349
AlwNI CAGNNNCTG 1 cut(s) 731
Ama87I CYCGRG 1 cut(s) 1196
AoxI GGCC 5 cut(s) 297, 425, 528, 841, 1104
ApeKI GCWGC 6 cut(s) 197, 214, 382, 475, 1148, 1240
ApoI RAATTY 3 cut(s) 721, 822, 1546
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 3 cut(s) 283, 529, 986
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 56, 1481, 1570
AvaI CYCGRG 1 cut(s) 1196
AvaII GGWCC 2 cut(s) 283, 986
BanI GGYRCC 1 cut(s) 1249
BanII GRGCYC 1 cut(s) 908
BauI CACGAG 2 cut(s) 770, 889
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 645, 1287
BbvI GCAGC 6 cut(s) 201, 209, 369, 487, 1160, 1227
BccI CCATC 4 cut(s) 110, 517, 540, 1317
BceAI ACGGC 6 cut(s) 395, 412, 454, 480, 728, 1091
BciT130I CCWGG 3 cut(s) 238, 296, 569
BclI TGATCA 1 cut(s) 1140
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 577, 1393
BfaI CTAG 2 cut(s) 140, 257
BfmI CTRYAG 2 cut(s) 215, 1241
BfuAI ACCTGC 2 cut(s) 1234, 1373
BglII AGATCT 1 cut(s) 219
Bme1390I CCNGG 4 cut(s) 185, 238, 296, 569
Bme18I GGWCC 2 cut(s) 283, 986
BmeT110I CYCGRG 1 cut(s) 1196
BmgT120I GGNCC 3 cut(s) 283, 529, 986
BmiI GGNNCC 4 cut(s) 285, 328, 1251, 1483
BmrFI CCNGG 4 cut(s) 185, 238, 296, 569
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 6 cut(s) 871, 980, 1055, 1063, 1297, 1384
BmuI ACTGGG 1 cut(s) 843
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 1398
BpuEI CTTGAG 5 cut(s) 134, 715, 1309, 1515, 1607
BpuMI CCSGG 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 1627
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 7 cut(s) 68, 261, 627, 646, 873, 900, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 423, 596, 633
Bse1I ACTGG 4 cut(s) 849, 1432, 1463, 1646
Bse3DI GCAATG 1 cut(s) 1164
BseBI CCWGG 3 cut(s) 238, 296, 569
BseDI CCNNGG 7 cut(s) 68, 261, 627, 646, 873, 900, 1087
BseGI GGATG 3 cut(s) 102, 1070, 1375
BseLI CCNNNNNNNGG 4 cut(s) 262, 423, 596, 633
BseMI GCAATG 1 cut(s) 1164
BseMII CTCAG 4 cut(s) 870, 1034, 1395, 1412
BseNI ACTGG 4 cut(s) 849, 1432, 1463, 1646
BseRI GAGGAG 1 cut(s) 1295
BseXI GCAGC 6 cut(s) 201, 209, 369, 487, 1160, 1227
BsgI GTGCAG 1 cut(s) 871
Bsh1236I CGCG 3 cut(s) 75, 1179, 1419
BshFI GGCC 5 cut(s) 299, 427, 530, 843, 1106
BshNI GGYRCC 1 cut(s) 1249
BsiHKAI GWGCWC 2 cut(s) 645, 1287
BsiHKCI CYCGRG 1 cut(s) 1196
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 4 cut(s) 262, 423, 596, 633
BsmAI GTCTC 2 cut(s) 577, 1393
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 1187
BsnI GGCC 5 cut(s) 299, 427, 530, 843, 1106
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 1196
Bsp1286I GDGCHC 3 cut(s) 645, 908, 1287
Bsp19I CCATGG 2 cut(s) 627, 873
BspANI GGCC 5 cut(s) 299, 427, 530, 843, 1106
BspCNI CTCAG 4 cut(s) 869, 1035, 1396, 1411
BspFNI CGCG 3 cut(s) 75, 1179, 1419
BspLI GGNNCC 4 cut(s) 285, 328, 1251, 1483
BspMAI CTGCAG 2 cut(s) 219, 1245
BspMI ACCTGC 2 cut(s) 1234, 1373
BspPI GGATC 4 cut(s) 685, 722, 950, 1349
BspQI GCTCTTC 1 cut(s) 1626
BspT107I GGYRCC 1 cut(s) 1249
BspTNI GGTCTC 1 cut(s) 577
BsrBI CCGCTC 2 cut(s) 289, 1349
BsrDI GCAATG 1 cut(s) 1164
BsrI ACTGG 4 cut(s) 849, 1432, 1463, 1646
BssECI CCNNGG 7 cut(s) 68, 261, 627, 646, 873, 900, 1087
BssNI GRCGYC 1 cut(s) 434
BssSI CACGAG 2 cut(s) 770, 889
BssT1I CCWWGG 5 cut(s) 627, 646, 873, 900, 1087
Bst2BI CACGAG 2 cut(s) 770, 889
Bst2UI CCWGG 3 cut(s) 238, 296, 569
Bst4CI ACNGT 4 cut(s) 579, 1057, 1124, 1271
Bst6I CTCTTC 2 cut(s) 519, 1626
BstACI GRCGYC 1 cut(s) 434
BstAPI GCANNNNNTGC 2 cut(s) 94, 481
BstBAI YACGTR 1 cut(s) 1627
BstC8I GCNNGC 7 cut(s) 8, 77, 95, 741, 845, 886, 969
BstDEI CTNAG 4 cut(s) 856, 1043, 1398, 1404
BstDSI CCRYGG 2 cut(s) 627, 873
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 3 cut(s) 102, 1070, 1375
BstFNI CGCG 3 cut(s) 75, 1179, 1419
BstHHI GCGC 1 cut(s) 75
BstMAI GTCTC 2 cut(s) 577, 1393
BstNI CCWGG 3 cut(s) 238, 296, 569
BstNSI RCATGY 3 cut(s) 915, 971, 1189
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 4 cut(s) 183, 236, 294, 567
BstSFI CTRYAG 2 cut(s) 215, 1241
BstUI CGCG 3 cut(s) 75, 1179, 1419
BstV1I GCAGC 6 cut(s) 201, 209, 369, 487, 1160, 1227
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 4 cut(s) 219, 677, 727, 942
BstYI RGATCY 4 cut(s) 219, 677, 727, 942
BsuRI GGCC 5 cut(s) 299, 427, 530, 843, 1106
BtgI CCRYGG 2 cut(s) 627, 873
BtsCI GGATG 3 cut(s) 102, 1070, 1375
BtsIMutI CAGTG 3 cut(s) 575, 1026, 1120
BveI ACCTGC 2 cut(s) 1234, 1373
Cac8I GCNNGC 7 cut(s) 8, 77, 95, 741, 845, 886, 969
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 283, 529, 986
CsiI ACCWGGT 1 cut(s) 567
DdeI CTNAG 4 cut(s) 856, 1043, 1398, 1404
DraI TTTAAA 2 cut(s) 1005, 1636
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 2 cut(s) 519, 1626
EarI CTCTTC 2 cut(s) 519, 1626
EciI GGCGGA 1 cut(s) 394
Eco130I CCWWGG 5 cut(s) 627, 646, 873, 900, 1087
Eco24I GRGCYC 1 cut(s) 908
Eco31I GGTCTC 1 cut(s) 577
Eco47I GGWCC 2 cut(s) 283, 986
Eco88I CYCGRG 1 cut(s) 1196
Eco91I GGTNACC 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 986
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 3 cut(s) 236, 294, 567
EcoT14I CCWWGG 5 cut(s) 627, 646, 873, 900, 1087
EcoT22I ATGCAT 2 cut(s) 973, 1187
EcoT38I GRGCYC 1 cut(s) 908
ErhI CCWWGG 5 cut(s) 627, 646, 873, 900, 1087
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 1569, 1601
FaqI GGGAC 1 cut(s) 128
FauI CCCGC 2 cut(s) 58, 294
FbaI TGATCA 1 cut(s) 1140
FblI GTMKAC 2 cut(s) 431, 1422
FokI GGATG 3 cut(s) 89, 1077, 1362
FriOI GRGCYC 1 cut(s) 908
FspBI CTAG 2 cut(s) 140, 257
GlaI GCGC 1 cut(s) 74
HaeIII GGCC 5 cut(s) 299, 427, 530, 843, 1106
HapII CCGG 1 cut(s) 184
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 434
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 2 cut(s) 190, 432
HindII GTYRAC 2 cut(s) 190, 432
HindIII AAGCTT 1 cut(s) 1515
HpaII CCGG 1 cut(s) 184
HphI GGTGA 3 cut(s) 56, 1481, 1570
Hpy166II GTNNAC 7 cut(s) 190, 432, 769, 1204, 1423, 1437, 1472
Hpy188III TCNNGA 6 cut(s) 731, 770, 803, 863, 1532, 1656
Hpy8I GTNNAC 7 cut(s) 190, 432, 769, 1204, 1423, 1437, 1472
Hpy99I CGWCG 8 cut(s) 31, 34, 311, 433, 436, 439, 449, 501
HpyAV CCTTC 4 cut(s) 30, 596, 932, 999
HpyCH4III ACNGT 4 cut(s) 579, 1057, 1124, 1271
HpyCH4IV ACGT 3 cut(s) 26, 434, 1626
HpyF3I CTNAG 4 cut(s) 856, 1043, 1398, 1404
HpySE526I ACGT 3 cut(s) 26, 434, 1626
Hsp92I GRCGYC 1 cut(s) 434
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 1140
LguI GCTCTTC 1 cut(s) 1626
LmnI GCTCC 7 cut(s) 326, 486, 712, 1091, 1282, 1346, 1487
Lsp1109I GCAGC 6 cut(s) 201, 209, 369, 487, 1160, 1227
LweI GCATC 6 cut(s) 871, 980, 1055, 1063, 1297, 1384
MabI ACCWGGT 1 cut(s) 567
MaeI CTAG 2 cut(s) 140, 257
MaeII ACGT 3 cut(s) 26, 434, 1626
MaeIII GTNAC 2 cut(s) 563, 689
MbiI CCGCTC 2 cut(s) 289, 1349
MboII GAAGA 5 cut(s) 27, 109, 536, 620, 1613
MfeI CAATTG 2 cut(s) 12, 1080
MflI RGATCY 4 cut(s) 219, 677, 727, 942
MhlI GDGCHC 3 cut(s) 645, 908, 1287
MlyI GAGTC 3 cut(s) 218, 287, 1415
MmeI TCCRAC 4 cut(s) 261, 304, 1078, 1257
Mph1103I ATGCAT 2 cut(s) 973, 1187
MseI TTAA 4 cut(s) 623, 981, 1004, 1635
MslI CAYNNNNRTG 1 cut(s) 1290
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 4 cut(s) 185, 238, 296, 569
MunI CAATTG 2 cut(s) 12, 1080
Mva1269I GAATGC 1 cut(s) 1187
MvaI CCWGG 3 cut(s) 238, 296, 569
MvnI CGCG 3 cut(s) 75, 1179, 1419
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 2 cut(s) 627, 873
NlaIV GGNNCC 4 cut(s) 285, 328, 1251, 1483
NmeAIII GCCGAG 2 cut(s) 49, 201
NmuCI GTSAC 1 cut(s) 689
NsiI ATGCAT 2 cut(s) 973, 1187
NspI RCATGY 3 cut(s) 915, 971, 1189
OliI CACNNNNGTG 1 cut(s) 1290
PaeI GCATGC 1 cut(s) 971
PaqCI CACCTGC 2 cut(s) 1234, 1373
PciI ACATGT 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 1626
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 240
PctI GAATGC 1 cut(s) 1187
PfeI GAWTC 9 cut(s) 61, 401, 611, 658, 1016, 1158, 1364, 1450, 1526
PleI GAGTC 3 cut(s) 217, 286, 1414
PpsI GAGTC 3 cut(s) 217, 286, 1414
Ppu21I YACGTR 1 cut(s) 1627
PpuMI RGGWCCY 1 cut(s) 986
PscI ACATGT 1 cut(s) 911
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 3 cut(s) 236, 294, 567
PspEI GGTNACC 1 cut(s) 563
PspGI CCWGG 3 cut(s) 236, 294, 567
PspN4I GGNNCC 4 cut(s) 285, 328, 1251, 1483
PspPI GGNCC 3 cut(s) 283, 529, 986
PspPPI RGGWCCY 1 cut(s) 986
PstI CTGCAG 2 cut(s) 219, 1245
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 4 cut(s) 219, 677, 727, 942
RseI CAYNNNNRTG 1 cut(s) 1290
SalI GTCGAC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 1626
SaqAI TTAA 4 cut(s) 623, 981, 1004, 1635
Sau96I GGNCC 3 cut(s) 283, 529, 986
SchI GAGTC 3 cut(s) 218, 287, 1415
ScrFI CCNGG 4 cut(s) 185, 238, 296, 569
SduI GDGCHC 3 cut(s) 645, 908, 1287
SexAI ACCWGGT 1 cut(s) 567
SfaNI GCATC 6 cut(s) 871, 980, 1055, 1063, 1297, 1384
SfcI CTRYAG 2 cut(s) 215, 1241
SgrDI CGTCGACG 1 cut(s) 430
SinI GGWCC 2 cut(s) 283, 986
SmiMI CAYNNNNRTG 1 cut(s) 1290
SmlI CTYRAG 5 cut(s) 149, 694, 1288, 1530, 1586
SmoI CTYRAG 5 cut(s) 149, 694, 1288, 1530, 1586
SphI GCATGC 1 cut(s) 971
SspI AATATT 1 cut(s) 811
SspMI CTAG 2 cut(s) 140, 257
StyD4I CCNGG 4 cut(s) 183, 236, 294, 567
StyI CCWWGG 5 cut(s) 627, 646, 873, 900, 1087
TaaI ACNGT 4 cut(s) 579, 1057, 1124, 1271
TaiI ACGT 3 cut(s) 29, 437, 1629
TaqI TCGA 8 cut(s) 38, 84, 165, 249, 431, 444, 936, 1156
TauI GCSGC 4 cut(s) 197, 410, 761, 1179
TfiI GAWTC 9 cut(s) 61, 401, 611, 658, 1016, 1158, 1364, 1450, 1526
Tru1I TTAA 4 cut(s) 623, 981, 1004, 1635
Tru9I TTAA 4 cut(s) 623, 981, 1004, 1635
TscAI CASTG 3 cut(s) 582, 1026, 1127
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 6 cut(s) 197, 214, 382, 475, 1148, 1240
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 4 cut(s) 260, 537, 1124, 1344
TspRI CASTG 3 cut(s) 582, 1026, 1127
VpaK11BI GGWCC 2 cut(s) 283, 986
XapI RAATTY 3 cut(s) 721, 822, 1546
XceI RCATGY 3 cut(s) 915, 971, 1189
XmiI GTMKAC 2 cut(s) 431, 1422
XspI CTAG 2 cut(s) 140, 257
ZraI GACGTC 1 cut(s) 435
Zsp2I ATGCAT 2 cut(s) 973, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.