Rorug03G0182700

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005065
Physical Location & Seq
Reverse (-)
15717620 .. 15721642
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0182700.1

Sequence Viewer

Length: 1140 bp
ATGGGCTGGGCTGGGCTGGAGGCAGCGATGGGTGGGGCTGTGCTTAGCGTTGCGTCGCGGGATTGCAGGTGCTGCTGCAAGGTGGTGATGCAGGAGCTGGGGGGTGCTGCTGTGCGCGCAGGCGGGTGGTGGCCTGGTCTAGGCTGGAGGCCGGTGGTGTGCTGCAGGCCCGTGTATTGCAGGCGGCAAGGTTGGGAAGGCAGTGGGCTGGGATGCAGGCTGCTGCGCAGGTTGCAGGAGGAGGGAAAAGCCGAGCTAAGTGATGATGAACGCCTTTTTTACCTTGGAATCTGTACTCCTGCTGATCTTAACAATAATAACAAAGAAACAGGAAGTGACTCTGGCCTTTCACTAGAGAAGCTAAGTCTCCAACCACGAAAGAAGCTTCTTGTTCTCAGTCTCAATGGGCTTCTACTCTACCGAGTTTACAGGTTTTCCCAACTACTCGAGATCCTGATGCCAGATTTGCAAGTCAACTGGTTTTCAGAAGACCTTTTGCTGCAGAGTTTGTGGAATTCTGCCTTGAACGATTTGAAGTGGCGAAGAAAAGTCAAAGGTGTTTTGAATCGTGTAATGGGAAGGAGGCAGAGAAAGAAACTGTTAGTTATATTTGCTCAAGACGATTGCACTTATTCTGGGTCCATGTCCATGGAGGATAAAGAGAAGCCCTTGTTTCTCAAAGAATTGAAGGATTTGTGGAAATATCTTGATGGGAAGTATTCTGAATCTGATACACTGTTGATTGATGATCAACCTTACAAGGCCTTGCTCAATCCTCCTTACATAGGGATTTTCCTCGAATCCTACAATCCTGACAATGCTGGTGATAATGCATTAGGAGAACTGGGGGTGTACTTGGATGACCTTGCAGCTGCAGATAATGTTCAGGTTTATGTGAAAAAGAACCCATTTGGAGTGCCTGCAATTTCATCTGGCCATCCTGATTGGAACTTATACTCTGATGTCATTCGACGACTTAAGGGAGAAAGCGAGAAAGCAAGTACATCTCAGCAGCTGGATTCTAGTATCAGTTGGAGTAGTTGGACTTTCTACCATATCAACTGCCACATAAAGTGGGATGCAGGTGGTAGTACCCTAAAAGGTTGCATTCAGGACAAAGGTGTTTCACCCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

379

Amino Acids

42.59

Weight (kDa)

8.16

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 210 - 295 2.3e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 57, 1073
Acc16I TGCGCA 1 cut(s) 227
Acc36I ACCTGC 3 cut(s) 57, 219, 1073
AccII CGCG 2 cut(s) 58, 117
AciI CCGC 3 cut(s) 58, 123, 184
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 934
AcsI RAATTY 1 cut(s) 514
AfaI GTAC 4 cut(s) 295, 854, 1003, 1093
AfiI CCNNNNNNNGG 2 cut(s) 140, 785
AflII CTTAAG 1 cut(s) 977
AgsI TTSAA 4 cut(s) 526, 535, 565, 688
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 6 cut(s) 97, 256, 361, 385, 872, 1015
AluI AGCT 6 cut(s) 97, 256, 361, 385, 872, 1015
Alw26I GTCTC 2 cut(s) 371, 404
AlwI GGATC 1 cut(s) 445
AlwNI CAGNNNCTG 3 cut(s) 72, 97, 1015
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 6 cut(s) 131, 149, 167, 343, 762, 934
ApoI RAATTY 1 cut(s) 514
AspLEI GCGC 3 cut(s) 117, 119, 228
AspS9I GGNCC 2 cut(s) 168, 639
AsuHPI GGTGA 3 cut(s) 97, 836, 1119
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 639
BalI TGGCCA 1 cut(s) 936
BbsI GAAGAC 1 cut(s) 495
BccI CCATC 3 cut(s) 22, 704, 945
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 371, 404
BfaI CTAG 3 cut(s) 140, 353, 1023
BfmI CTRYAG 3 cut(s) 163, 500, 873
BfrI CTTAAG 1 cut(s) 977
BfuAI ACCTGC 3 cut(s) 57, 219, 1073
BlpI GCTNAGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 639
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 168, 639
BmiI GGNNCC 1 cut(s) 640
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 4 cut(s) 78, 203, 447, 1069
BmuI ACTGGG 1 cut(s) 854
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 2 cut(s) 38, 166
Bpu1102I GCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 283, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 785
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 2 cut(s) 482, 849
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 283, 648
BseGI GGATG 4 cut(s) 218, 865, 937, 1084
BseLI CCNNNNNNNGG 2 cut(s) 140, 785
BseMII CTCAG 2 cut(s) 409, 1022
BseNI ACTGG 2 cut(s) 482, 849
BsePI GCGCGC 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 254
BseYI CCCAGC 4 cut(s) 6, 11, 97, 208
Bsh1236I CGCG 2 cut(s) 58, 117
BshFI GGCC 6 cut(s) 133, 151, 169, 345, 764, 936
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 140, 785
BsmAI GTCTC 2 cut(s) 371, 404
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 6 cut(s) 133, 151, 169, 345, 764, 936
BsoBI CYCGRG 1 cut(s) 446
Bsp143I GATC 3 cut(s) 304, 450, 748
Bsp1720I GCTNAGC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 3 cut(s) 58, 123, 184
BspANI GGCC 6 cut(s) 133, 151, 169, 345, 764, 936
BspCNI CTCAG 2 cut(s) 408, 1021
BspFNI CGCG 2 cut(s) 58, 117
BspLI GGNNCC 1 cut(s) 640
BspMAI CTGCAG 3 cut(s) 167, 504, 877
BspMI ACCTGC 3 cut(s) 57, 219, 1073
BspPI GGATC 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 977
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 2 cut(s) 482, 849
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 283, 648
BssHII GCGCGC 1 cut(s) 115
BssMI GATC 3 cut(s) 304, 450, 748
BssT1I CCWWGG 2 cut(s) 283, 648
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 600, 738
BstAFI CTTAAG 1 cut(s) 977
BstAPI GCANNNNNTGC 1 cut(s) 72
BstC8I GCNNGC 6 cut(s) 117, 121, 167, 182, 218, 921
BstDEI CTNAG 5 cut(s) 44, 257, 362, 395, 1008
BstDSI CCRYGG 1 cut(s) 648
BstENI CCTNNNNNAGG 2 cut(s) 138, 783
BstF5I GGATG 4 cut(s) 218, 865, 937, 1084
BstFNI CGCG 2 cut(s) 58, 117
BstHHI GCGC 3 cut(s) 117, 119, 228
BstKTI GATC 3 cut(s) 307, 453, 751
BstMAI GTCTC 2 cut(s) 371, 404
BstMBI GATC 3 cut(s) 304, 450, 748
BstMWI GCNNNNNNNGC 4 cut(s) 72, 116, 232, 466
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 3 cut(s) 163, 500, 873
BstUI CGCG 2 cut(s) 58, 117
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 450
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 6 cut(s) 133, 151, 169, 345, 764, 936
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 4 cut(s) 218, 865, 937, 1084
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 734
BveI ACCTGC 3 cut(s) 57, 219, 1073
Cac8I GCNNGC 6 cut(s) 117, 121, 167, 182, 218, 921
CaiI CAGNNNCTG 3 cut(s) 72, 97, 1015
CfoI GCGC 3 cut(s) 117, 119, 228
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 168, 639
CseI GACGC 1 cut(s) 42
Csp6I GTAC 4 cut(s) 294, 853, 1002, 1092
CviAII CATG 2 cut(s) 643, 649
CviQI GTAC 4 cut(s) 294, 853, 1002, 1092
DdeI CTNAG 5 cut(s) 44, 257, 362, 395, 1008
DpnI GATC 3 cut(s) 306, 452, 750
DpnII GATC 3 cut(s) 304, 450, 748
EaeI YGGCCR 1 cut(s) 934
Eco130I CCWWGG 2 cut(s) 283, 648
Eco147I AGGCCT 1 cut(s) 764
Eco47I GGWCC 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 446
EcoNI CCTNNNNNAGG 2 cut(s) 138, 783
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 283, 648
EcoT22I ATGCAT 1 cut(s) 835
ErhI CCWWGG 2 cut(s) 283, 648
FaeI CATG 2 cut(s) 646, 652
FaiI YATR 8 cut(s) 608, 644, 650, 785, 894, 955, 1056, 1070
FatI CATG 2 cut(s) 642, 648
FauI CCCGC 2 cut(s) 51, 116
FbaI TGATCA 1 cut(s) 748
FokI GGATG 4 cut(s) 225, 872, 924, 1091
FspBI CTAG 3 cut(s) 140, 353, 1023
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 3 cut(s) 116, 118, 227
GsaI CCCAGC 4 cut(s) 10, 15, 101, 212
GsuI CTGGAG 2 cut(s) 38, 166
HaeIII GGCC 6 cut(s) 133, 151, 169, 345, 764, 936
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 42
HhaI GCGC 3 cut(s) 117, 119, 228
Hin1II CATG 2 cut(s) 646, 652
Hin6I GCGC 3 cut(s) 115, 117, 226
HinP1I GCGC 3 cut(s) 115, 117, 226
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 6 cut(s) 288, 338, 565, 725, 800, 1019
HpaII CCGG 1 cut(s) 152
HphI GGTGA 3 cut(s) 97, 836, 1119
Hpy166II GTNNAC 3 cut(s) 427, 475, 853
Hpy188I TCNGA 4 cut(s) 487, 724, 730, 961
Hpy188III TCNNGA 7 cut(s) 448, 454, 617, 707, 812, 941, 1112
Hpy8I GTNNAC 3 cut(s) 427, 475, 853
Hpy99I CGWCG 2 cut(s) 58, 975
HpyAV CCTTC 3 cut(s) 191, 573, 682
HpyCH4III ACNGT 2 cut(s) 600, 738
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 116, 232, 466
HpyF3I CTNAG 5 cut(s) 44, 257, 362, 395, 1008
Hsp92II CATG 2 cut(s) 646, 652
HspAI GCGC 3 cut(s) 115, 117, 226
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 3 cut(s) 304, 450, 748
LmnI GCTCC 1 cut(s) 94
LweI GCATC 4 cut(s) 78, 203, 447, 1069
MaeI CTAG 3 cut(s) 140, 353, 1023
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 306, 452, 750
MboI GATC 3 cut(s) 304, 450, 748
MboII GAAGA 2 cut(s) 500, 555
MflI RGATCY 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 936
MluCI AATT 3 cut(s) 514, 683, 924
MluNI TGGCCA 1 cut(s) 936
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 3 cut(s) 394, 1013, 1022
MnlI CCTC 8 cut(s) 13, 141, 232, 235, 576, 646, 786, 806
Mox20I TGGCCA 1 cut(s) 936
Mph1103I ATGCAT 1 cut(s) 835
MscI TGGCCA 1 cut(s) 936
MseI TTAA 3 cut(s) 309, 978, 1138
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 1 cut(s) 936
MspA1I CMGCKG 2 cut(s) 872, 1015
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 2 cut(s) 58, 117
MwoI GCNNNNNNNGC 4 cut(s) 72, 116, 232, 466
NcoI CCATGG 1 cut(s) 648
NdeII GATC 3 cut(s) 304, 450, 748
NlaIII CATG 2 cut(s) 646, 652
NlaIV GGNNCC 1 cut(s) 640
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 335
NsbI TGCGCA 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 835
PaeR7I CTCGAG 1 cut(s) 446
PaqCI CACCTGC 2 cut(s) 57, 1073
PauI GCGCGC 1 cut(s) 115
PceI AGGCCT 1 cut(s) 764
PctI GAATGC 1 cut(s) 1107
PfeI GAWTC 5 cut(s) 288, 565, 725, 800, 1019
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 133
PspFI CCCAGC 4 cut(s) 6, 11, 97, 208
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 640
PspPI GGNCC 2 cut(s) 168, 639
PstI CTGCAG 3 cut(s) 167, 504, 877
PstNI CAGNNNCTG 3 cut(s) 72, 97, 1015
PsuI RGATCY 1 cut(s) 450
PteI GCGCGC 1 cut(s) 115
PvuII CAGCTG 2 cut(s) 872, 1015
RsaI GTAC 4 cut(s) 295, 854, 1003, 1093
RsaNI GTAC 4 cut(s) 294, 853, 1002, 1092
RseI CAYNNNNRTG 1 cut(s) 647
SaqAI TTAA 3 cut(s) 309, 978, 1138
Sau3AI GATC 3 cut(s) 304, 450, 748
Sau96I GGNCC 2 cut(s) 168, 639
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 135
SfaNI GCATC 4 cut(s) 78, 203, 447, 1069
SfcI CTRYAG 3 cut(s) 163, 500, 873
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 639
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 3 cut(s) 446, 615, 977
SmoI CTYRAG 3 cut(s) 446, 615, 977
Sse9I AATT 3 cut(s) 514, 683, 924
SseBI AGGCCT 1 cut(s) 764
SsiI CCGC 3 cut(s) 58, 123, 184
SspMI CTAG 3 cut(s) 140, 353, 1023
StuI AGGCCT 1 cut(s) 764
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 2 cut(s) 283, 648
TaaI ACNGT 2 cut(s) 600, 738
TaqI TCGA 3 cut(s) 447, 798, 970
TasI AATT 3 cut(s) 514, 683, 924
TatI WGTACW 3 cut(s) 293, 852, 1001
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 5 cut(s) 288, 565, 725, 800, 1019
Tru1I TTAA 3 cut(s) 309, 978, 1138
Tru9I TTAA 3 cut(s) 309, 978, 1138
TscAI CASTG 2 cut(s) 208, 741
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 282, 918
TspRI CASTG 2 cut(s) 208, 741
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 639
XagI CCTNNNNNAGG 2 cut(s) 138, 783
XapI RAATTY 1 cut(s) 514
XhoI CTCGAG 1 cut(s) 446
XspI CTAG 3 cut(s) 140, 353, 1023
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.