Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002586.1

Orthogroup ID

OG0005065

Physical Location & Seq

Genomic Coordinates Forward (+)

22585 .. 23109

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002586.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgtcgtcatcccccgtcatcgagcacatcgtcctcttcaaggtcaaagacgacaccgacccctccaaggtcaacaacctcacctccctcagtctcaccctccacctctttaccggtcccctcctcctcacccgatcttccctcttcacctttagtcaccgggccaagcccgacgtcattgatgaagttggagtcgatgtgtatgatttggttttgttcctccacattcagtcctacaagaaattgttgcccagaaagcacaaggattccgcggccgttgccgatgtttgcccctccacctcagctttcgacggatatttgtcggctttgttagggttgcaagtgatgatttgtgccggaattgattgcttttttgctttggggtggtggattgtgcaatgttgctgtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC

Protein Analysis

137

Amino Acids

15.09

Weight (kDa)

6.15

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42230 AT2G42230 AT3G57890 AT3G57890
fragaria_vesca	FvH4_6g22720 FvH4_6g22720 FvH4_6g22720 FvH4_6g22720 FvH4_6g22720
malus_domestica	MD12G1061200.v1.1 MD14G1060900.v1.1
prunus_persica	Prupe.7G073500_v2.0.a1 Prupe.7G073500_v2.0.a1
pyrus_communis	pycom12g05410 pycom14g04950
rosa_chinensis	RchiOBHm_Chr2g0135751 RchiOBHm_Chr3g0480321
rosa_laevigata	RLG00000023492
rosa_multiflora	Rmu_sc0002586.1_g000007 Rmu_sc0011605.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401560
rosa_rugosa	Rorug03G0182500 Rorug03G0182600 Rorug03G0182700
rosa_samantha	Rh3AG234400 Rh3BG266700 Rh3CG264200 Rh3DG259700 Rh7CG483300
rosa_wichuraiana	Rw3G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccII	CGCG	1 cut(s)	272
AciI	CCGC	2 cut(s)	270, 272
AcoI	YGGCCR	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	40, 67
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	162, 273
AsiGI	ACCGGT	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	116, 162
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	5 cut(s)	73, 88, 121, 139, 149
AvaII	GGWCC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	116, 162
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	66, 270
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 183, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 67
Bse118I	RCCGGY	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	66, 270
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	40, 67
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	103, 315
BseRI	GAGGAG	2 cut(s)	113, 116
BseX3I	CGGCCG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	164, 275
BshTI	ACCGGT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	114, 160, 357
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	40, 67
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	164, 275
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	2 cut(s)	270, 272
BspANI	GGCC	2 cut(s)	164, 275
BspCNI	CTCAG	2 cut(s)	102, 314
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	66, 270
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	41, 149
BstACI	GRCGYC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	89, 301
BstDSI	CCRYGG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	134
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 278
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	272
BstZI	CGGCCG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	164, 275
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	116, 162
Cfr42I	CCGCGG	1 cut(s)	273
CspAI	ACCGGT	1 cut(s)	113
CviJI	RGCY	5 cut(s)	164, 169, 275, 305, 326
CviKI_1	RGCY	5 cut(s)	164, 169, 275, 305, 326
DdeI	CTNAG	2 cut(s)	89, 301
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	273
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	41, 149
EarI	CTCTTC	2 cut(s)	41, 149
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	116
Eco52I	CGGCCG	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaiI	YATR	1 cut(s)	204
FaqI	GGGAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	164, 275
HapII	CCGG	3 cut(s)	114, 160, 357
Hin1I	GRCGYC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	192, 266
HpaII	CCGG	3 cut(s)	114, 160, 357
HphI	GGTGA	5 cut(s)	73, 88, 121, 139, 149
Hpy166II	GTNNAC	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	176, 314
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	340, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 278
HpyF3I	CTNAG	2 cut(s)	89, 301
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	174
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	134
LpnPI	CCDG	4 cut(s)	127, 173, 265, 370
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	3 cut(s)	28, 129, 136
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	242, 360
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	169
MseI	TTAA	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	3 cut(s)	114, 160, 357
MspR9I	CCNGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	256, 278
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	266
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	116, 162
SacII	CCGCGG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	2 cut(s)	116, 162
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	45, 72, 81, 86, 108, 152, 177, 302, 307
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	2 cut(s)	242, 360
SsiI	CCGC	2 cut(s)	270, 272
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	21, 195, 309
TasI	AATT	2 cut(s)	242, 360
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.