Rh3DG259700

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005065
Physical Location & Seq
Reverse (-)
25711230 .. 25718510
7281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG259700.1

Sequence Viewer

Length: 1281 bp
ATGAGCGAGCCAATTGAGCCCTCAACGTCGTCGTCTTCGACCAAAGACCCCGCCTTTCTGATTCACCCTCGGCGCGAGCCATTCGAGCATGGCTTGCTCTCCATCCCCAAGCTCATCTTCGCCGACCCCACGCAAACCCTAGTCCCTCTCAAGCACAAGCTAATCGAGCAATCGCCGAGCCACCGGGTCAACGCCGCAGCGATCTCCGAGTCCCTGCAGATCTCCATTGATCTCGCCAGGCTCGTCCTCGATACCCTAGCCTCGGTGCTTCATTTGGAGTCCGACCCGCTCGTCCAGGCCAAGCCCGACGGGGTTGATGAGGTCGGAGCCGATGTGCATGATCTGGTTTTGTTCCTCTACATTCAGTCCTACAAGAAATTGCTGCCCAGAACGCACAAGGATTCCGCCGCCGTTGCCGATGTTTGGCCGTCGACGTCGGCTTTCGACGGGTATTTGTCGGCTTTGTCGCCGTTGCAGCTTGTGCGGAGCAATAGCCGTCGGTTTGTGCCATCACAGGCTGATGAAGAGGCCCATCAGTTATCATATCTGCAAAAACATTTGGGTAACCTGGTCTCACTGTTAGCTGAACCTGTGGAGGGGGAAGGCGAAGAATCTCTGGTTTTAAACATGGAAATGTTAGAGCACCTTGGGTTTCTGATTCAATTTGGCGATAAAGGATCTGAAAGTGGTCACTTAAGCCAATATGCTCCTTTCTTTGCAAATTCAGATCCTGATATGCCTGCCGTTCCTGTTCCTGCTGCACAAGTTCACGAGTGGATTTTAAATAATATAGCTTCTGCTCTGGAAAATATTTCTGAAAGAATTTCTCCTAAAGAAAATGGCCTGCCCAGTTCCTCAGATCAAGATGTTCCCATGGCTGATGCCTGCACGAGTTCTACCAAGGGCTCGACATGTGTTAGAGGTTCAAGTTTTATTGAAGGGATCTCTAAATCATCACTTGTAAGGCATGCATCTGATCTTAAAGGTCCTTCTGTAAAGGTTTTAAACTGCCATGATTCAGTGATCTATATATTAGCACCTCTGAGATATGCCACAGTCTATGGATGCTCTGATGCTACAATTGTCCTTGGAGCTGTTGGAAAGGCCGTAAGAATTGAACACTGTGAGCGAGTTCATGTGATCACAGCAGCAAATCGAATCTGCATTGCTAACTGCCGCGAATGCATGTTTTTTCTCGGGGTAAACCAACGACCACTTATTGTTGGGGATAACCATAAGCTGCAGGTGAGTTTCACCATATTGTTAATCGCACCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

426

Amino Acids

46.3

Weight (kDa)

5.55

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCC PF07986 331 - 416 2.4e-21 Tubulin binding cofactor C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1234
AasI GACNNNNNNGTC 1 cut(s) 290
AatII GACGTC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 1234
AccBSI CCGCTC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 431
AccII CGCG 2 cut(s) 75, 1179
AciI CCGC 7 cut(s) 51, 195, 287, 405, 408, 484, 1177
AclWI GGATC 3 cut(s) 685, 722, 950
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 2 cut(s) 721, 822
AcyI GRCGYC 1 cut(s) 434
AfiI CCNNNNNNNGG 3 cut(s) 262, 423, 596
AflII CTTAAG 1 cut(s) 694
AflIII ACRYGT 1 cut(s) 911
AgsI TTSAA 4 cut(s) 662, 927, 938, 1118
AjnI CCWGG 3 cut(s) 236, 294, 567
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 7 cut(s) 112, 160, 478, 584, 794, 1094, 1240
AluI AGCT 7 cut(s) 112, 160, 478, 584, 794, 1094, 1240
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 3 cut(s) 685, 722, 950
AlwNI CAGNNNCTG 1 cut(s) 731
Ama87I CYCGRG 1 cut(s) 1196
AoxI GGCC 5 cut(s) 297, 425, 528, 841, 1104
ApeKI GCWGC 6 cut(s) 197, 382, 475, 758, 1148, 1240
ApoI RAATTY 2 cut(s) 721, 822
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 529, 986
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 56, 1246, 1258
AvaI CYCGRG 1 cut(s) 1196
AvaII GGWCC 1 cut(s) 986
BanII GRGCYC 2 cut(s) 21, 908
BauI CACGAG 2 cut(s) 770, 889
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 6 cut(s) 209, 369, 487, 745, 1160, 1227
BccI CCATC 3 cut(s) 110, 517, 540
BceAI ACGGC 6 cut(s) 395, 412, 454, 480, 728, 1091
BciT130I CCWGG 3 cut(s) 238, 296, 569
BclI TGATCA 1 cut(s) 1140
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 2 cut(s) 140, 257
BfmI CTRYAG 2 cut(s) 215, 1241
BfrI CTTAAG 1 cut(s) 694
BfuAI ACCTGC 1 cut(s) 1234
BglII AGATCT 1 cut(s) 219
BisI GCNGC 9 cut(s) 195, 198, 383, 408, 476, 759, 1149, 1177, 1241
BlsI GCNGC 9 cut(s) 196, 199, 384, 409, 477, 760, 1150, 1178, 1242
Bme1390I CCNGG 4 cut(s) 185, 238, 296, 569
Bme18I GGWCC 1 cut(s) 986
BmeT110I CYCGRG 1 cut(s) 1196
BmgT120I GGNCC 2 cut(s) 529, 986
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 4 cut(s) 185, 238, 296, 569
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 4 cut(s) 871, 980, 1055, 1063
BmuI ACTGGG 1 cut(s) 843
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 6 cut(s) 68, 261, 646, 873, 900, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 423, 596
Bse1I ACTGG 1 cut(s) 849
Bse3DI GCAATG 1 cut(s) 1164
BseBI CCWGG 3 cut(s) 238, 296, 569
BseDI CCNNGG 6 cut(s) 68, 261, 646, 873, 900, 1087
BseGI GGATG 2 cut(s) 102, 1070
BseLI CCNNNNNNNGG 3 cut(s) 262, 423, 596
BseMI GCAATG 1 cut(s) 1164
BseMII CTCAG 2 cut(s) 870, 1034
BseNI ACTGG 1 cut(s) 849
BseXI GCAGC 6 cut(s) 209, 369, 487, 745, 1160, 1227
BsgI GTGCAG 2 cut(s) 744, 871
Bsh1236I CGCG 2 cut(s) 75, 1179
BshFI GGCC 5 cut(s) 299, 427, 530, 843, 1106
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 1196
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 2 cut(s) 128, 196
BslI CCNNNNNNNGG 3 cut(s) 262, 423, 596
BsmAI GTCTC 1 cut(s) 577
BsmFI GGGAC 2 cut(s) 128, 196
BsmI GAATGC 1 cut(s) 1187
BsnI GGCC 5 cut(s) 299, 427, 530, 843, 1106
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 1196
Bsp1286I GDGCHC 3 cut(s) 21, 645, 908
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 7 cut(s) 51, 195, 287, 405, 408, 484, 1177
BspANI GGCC 5 cut(s) 299, 427, 530, 843, 1106
BspCNI CTCAG 2 cut(s) 869, 1035
BspFNI CGCG 2 cut(s) 75, 1179
BspLI GGNNCC 1 cut(s) 328
BspMAI CTGCAG 2 cut(s) 219, 1245
BspMI ACCTGC 1 cut(s) 1234
BspPI GGATC 3 cut(s) 685, 722, 950
BspTI CTTAAG 1 cut(s) 694
BspTNI GGTCTC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 1164
BsrI ACTGG 1 cut(s) 849
BssECI CCNNGG 6 cut(s) 68, 261, 646, 873, 900, 1087
BssNI GRCGYC 1 cut(s) 434
BssSI CACGAG 2 cut(s) 770, 889
BssT1I CCWWGG 4 cut(s) 646, 873, 900, 1087
Bst2BI CACGAG 2 cut(s) 770, 889
Bst2UI CCWGG 3 cut(s) 238, 296, 569
Bst4CI ACNGT 3 cut(s) 579, 1057, 1124
Bst6I CTCTTC 1 cut(s) 519
BstACI GRCGYC 1 cut(s) 434
BstAFI CTTAAG 1 cut(s) 694
BstAPI GCANNNNNTGC 2 cut(s) 94, 481
BstC8I GCNNGC 7 cut(s) 8, 77, 95, 741, 845, 886, 969
BstDEI CTNAG 2 cut(s) 856, 1043
BstDSI CCRYGG 1 cut(s) 873
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 2 cut(s) 102, 1070
BstFNI CGCG 2 cut(s) 75, 1179
BstHHI GCGC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 577
BstMWI GCNNNNNNNGC 9 cut(s) 16, 85, 94, 166, 391, 413, 475, 481, 1182
BstNI CCWGG 3 cut(s) 238, 296, 569
BstNSI RCATGY 3 cut(s) 915, 971, 1189
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 4 cut(s) 183, 236, 294, 567
BstSFI CTRYAG 2 cut(s) 215, 1241
BstUI CGCG 2 cut(s) 75, 1179
BstV1I GCAGC 6 cut(s) 209, 369, 487, 745, 1160, 1227
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 4 cut(s) 219, 677, 727, 942
BstYI RGATCY 4 cut(s) 219, 677, 727, 942
BsuRI GGCC 5 cut(s) 299, 427, 530, 843, 1106
BtgI CCRYGG 1 cut(s) 873
BtsCI GGATG 2 cut(s) 102, 1070
BtsIMutI CAGTG 3 cut(s) 575, 1026, 1120
BveI ACCTGC 1 cut(s) 1234
Cac8I GCNNGC 7 cut(s) 8, 77, 95, 741, 845, 886, 969
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 529, 986
CsiI ACCWGGT 1 cut(s) 567
CviAII CATG 9 cut(s) 89, 338, 628, 874, 912, 968, 1013, 1136, 1186
DdeI CTNAG 2 cut(s) 856, 1043
DraI TTTAAA 3 cut(s) 624, 783, 1005
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 1 cut(s) 394
Eco130I CCWWGG 4 cut(s) 646, 873, 900, 1087
Eco24I GRGCYC 2 cut(s) 21, 908
Eco31I GGTCTC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 986
Eco88I CYCGRG 1 cut(s) 1196
Eco91I GGTNACC 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 986
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 3 cut(s) 236, 294, 567
EcoT14I CCWWGG 4 cut(s) 646, 873, 900, 1087
EcoT22I ATGCAT 2 cut(s) 973, 1187
EcoT38I GRGCYC 2 cut(s) 21, 908
ErhI CCWWGG 4 cut(s) 646, 873, 900, 1087
FaeI CATG 9 cut(s) 92, 341, 631, 877, 915, 971, 1016, 1139, 1189
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 128, 196
FatI CATG 9 cut(s) 88, 337, 627, 873, 911, 967, 1012, 1135, 1185
FauI CCCGC 2 cut(s) 58, 294
FbaI TGATCA 1 cut(s) 1140
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 9 cut(s) 195, 198, 383, 408, 476, 759, 1149, 1177, 1241
FokI GGATG 2 cut(s) 89, 1077
FriOI GRGCYC 2 cut(s) 21, 908
Fsp4HI GCNGC 9 cut(s) 195, 198, 383, 408, 476, 759, 1149, 1177, 1241
FspBI CTAG 2 cut(s) 140, 257
GlaI GCGC 1 cut(s) 74
GluI GCNGC 9 cut(s) 195, 198, 383, 408, 476, 759, 1149, 1177, 1241
HaeIII GGCC 5 cut(s) 299, 427, 530, 843, 1106
HapII CCGG 1 cut(s) 184
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 9 cut(s) 92, 341, 631, 877, 915, 971, 1016, 1139, 1189
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 2 cut(s) 190, 432
HindII GTYRAC 2 cut(s) 190, 432
HinfI GANTC 8 cut(s) 61, 209, 278, 401, 611, 658, 1016, 1158
HpaII CCGG 1 cut(s) 184
HphI GGTGA 3 cut(s) 56, 1246, 1258
Hpy166II GTNNAC 4 cut(s) 190, 432, 769, 1204
Hpy188III TCNNGA 4 cut(s) 731, 770, 803, 863
Hpy8I GTNNAC 4 cut(s) 190, 432, 769, 1204
Hpy99I CGWCG 8 cut(s) 31, 34, 311, 433, 436, 439, 449, 501
HpyAV CCTTC 3 cut(s) 596, 932, 999
HpyCH4III ACNGT 3 cut(s) 579, 1057, 1124
HpyCH4IV ACGT 2 cut(s) 26, 434
HpyF10VI GCNNNNNNNGC 9 cut(s) 16, 85, 94, 166, 391, 413, 475, 481, 1182
HpyF3I CTNAG 2 cut(s) 856, 1043
HpySE526I ACGT 2 cut(s) 26, 434
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 9 cut(s) 92, 341, 631, 877, 915, 971, 1016, 1139, 1189
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 1140
LmnI GCTCC 4 cut(s) 326, 486, 712, 1091
Lsp1109I GCAGC 6 cut(s) 209, 369, 487, 745, 1160, 1227
LweI GCATC 4 cut(s) 871, 980, 1055, 1063
MabI ACCWGGT 1 cut(s) 567
MaeI CTAG 2 cut(s) 140, 257
MaeII ACGT 2 cut(s) 26, 434
MaeIII GTNAC 2 cut(s) 563, 689
MbiI CCGCTC 1 cut(s) 289
MboII GAAGA 4 cut(s) 27, 109, 536, 620
MfeI CAATTG 2 cut(s) 12, 1080
MflI RGATCY 4 cut(s) 219, 677, 727, 942
MhlI GDGCHC 3 cut(s) 21, 645, 908
MluCI AATT 7 cut(s) 12, 377, 662, 721, 822, 1080, 1113
MlyI GAGTC 2 cut(s) 218, 287
MmeI TCCRAC 3 cut(s) 304, 306, 1078
Mph1103I ATGCAT 2 cut(s) 973, 1187
MseI TTAA 6 cut(s) 623, 695, 782, 981, 1004, 1265
MslI CAYNNNNRTG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 694
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 4 cut(s) 185, 238, 296, 569
MunI CAATTG 2 cut(s) 12, 1080
Mva1269I GAATGC 1 cut(s) 1187
MvaI CCWGG 3 cut(s) 238, 296, 569
MvnI CGCG 2 cut(s) 75, 1179
MwoI GCNNNNNNNGC 9 cut(s) 16, 85, 94, 166, 391, 413, 475, 481, 1182
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 1 cut(s) 873
NlaIII CATG 9 cut(s) 92, 341, 631, 877, 915, 971, 1016, 1139, 1189
NlaIV GGNNCC 1 cut(s) 328
NmeAIII GCCGAG 2 cut(s) 49, 201
NmuCI GTSAC 1 cut(s) 689
NsiI ATGCAT 2 cut(s) 973, 1187
NspI RCATGY 3 cut(s) 915, 971, 1189
PaeI GCATGC 1 cut(s) 971
PaqCI CACCTGC 1 cut(s) 1234
PciI ACATGT 1 cut(s) 911
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 240
PctI GAATGC 1 cut(s) 1187
PfeI GAWTC 6 cut(s) 61, 401, 611, 658, 1016, 1158
PkrI GCNGC 9 cut(s) 196, 199, 384, 409, 477, 760, 1150, 1178, 1242
PleI GAGTC 2 cut(s) 217, 286
PpsI GAGTC 2 cut(s) 217, 286
PpuMI RGGWCCY 1 cut(s) 986
PscI ACATGT 1 cut(s) 911
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 3 cut(s) 236, 294, 567
PspEI GGTNACC 1 cut(s) 563
PspGI CCWGG 3 cut(s) 236, 294, 567
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 2 cut(s) 529, 986
PspPPI RGGWCCY 1 cut(s) 986
PstI CTGCAG 2 cut(s) 219, 1245
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 4 cut(s) 219, 677, 727, 942
RseI CAYNNNNRTG 1 cut(s) 632
SalI GTCGAC 1 cut(s) 430
SaqAI TTAA 6 cut(s) 623, 695, 782, 981, 1004, 1265
SatI GCNGC 9 cut(s) 195, 198, 383, 408, 476, 759, 1149, 1177, 1241
Sau96I GGNCC 2 cut(s) 529, 986
SchI GAGTC 2 cut(s) 218, 287
ScrFI CCNGG 4 cut(s) 185, 238, 296, 569
SduI GDGCHC 3 cut(s) 21, 645, 908
SexAI ACCWGGT 1 cut(s) 567
SfaNI GCATC 4 cut(s) 871, 980, 1055, 1063
SfcI CTRYAG 2 cut(s) 215, 1241
SgrDI CGTCGACG 1 cut(s) 430
SinI GGWCC 1 cut(s) 986
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 2 cut(s) 149, 694
SmoI CTYRAG 2 cut(s) 149, 694
SphI GCATGC 1 cut(s) 971
Sse9I AATT 7 cut(s) 12, 377, 662, 721, 822, 1080, 1113
SsiI CCGC 7 cut(s) 51, 195, 287, 405, 408, 484, 1177
SspI AATATT 1 cut(s) 811
SspMI CTAG 2 cut(s) 140, 257
StyD4I CCNGG 4 cut(s) 183, 236, 294, 567
StyI CCWWGG 4 cut(s) 646, 873, 900, 1087
TaaI ACNGT 3 cut(s) 579, 1057, 1124
TaiI ACGT 2 cut(s) 29, 437
TaqI TCGA 8 cut(s) 38, 84, 165, 249, 431, 444, 908, 1156
TasI AATT 7 cut(s) 12, 377, 662, 721, 822, 1080, 1113
TauI GCSGC 3 cut(s) 197, 410, 1179
TfiI GAWTC 6 cut(s) 61, 401, 611, 658, 1016, 1158
Tru1I TTAA 6 cut(s) 623, 695, 782, 981, 1004, 1265
Tru9I TTAA 6 cut(s) 623, 695, 782, 981, 1004, 1265
TscAI CASTG 3 cut(s) 582, 1026, 1127
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 6 cut(s) 197, 382, 475, 758, 1148, 1240
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 3 cut(s) 260, 537, 1124
TspRI CASTG 3 cut(s) 582, 1026, 1127
Vha464I CTTAAG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 986
XapI RAATTY 2 cut(s) 721, 822
XceI RCATGY 3 cut(s) 915, 971, 1189
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 2 cut(s) 140, 257
ZraI GACGTC 1 cut(s) 435
Zsp2I ATGCAT 2 cut(s) 973, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.