Rh3AG234400

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005065
Physical Location & Seq
Reverse (-)
24129189 .. 24136570
7382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG234400.1

Sequence Viewer

Length: 1266 bp
ATGAGCGAGCCAATTGAGCCCTCAACGTCGTCGTCGTCTTCGACCAAAGACCCCGCCTTTCTGATTCACCCTCGGCGCGAGCCATTCGAGCATGGCTTGCTCTCCATCCCCAAGCTCATCTTCGCCGACCCCACGCAAACCCTAGTCCCTCTCAAGCACAAGCTAATCGAGCAATCGCCGAGCCACCGGGTCAACGCCGCAGCGATCTCCGAGTCCCTGCAGATCTCCATTGATCTCGCCAGGCTCGTGCTCGATACCCTAGCCTCGGTGCTTCATTTGGAGTCGGACCCGCTCGTCCAGGCCAAGCCCGACGGGGTGGATGAGGTCGGAGCCGATGTGCATGATCTGGTTTTGTTCCTCTATATTCAGTCCTACAAGAAATTGCTGCCCAGAACGCACAAGGATTCCGCCGCCGTTGCCGATGTTTGGCCGTCGACGTCGGCTTTCGACGGATACTTGTCGGCTTTGTCGCCGTTGCAGCTTGTGCGGAGCAATAGCCGTCGGTTTGTGCCATCACAGGCTGATGAAGAGGCCCATCAGTTATCATATCTGCAAAAGCATTTGGGTAACCTGGTCTCACTGTTAGCTGAACCTGTGGAGGGGGAAGGCGAAGAATCTCTGGTTTTAACCATGGAAAGGTTAGAGCACCTTGGGTTTCTGATTCAATTTGGCGATAAAGGATCTGAAAGTGGTCACTTGAGCCAATATGCTCCTTTCTTTGCAAATTCAGATCCTGATATGCCTGCTGTTCCTGTTCCTGCCGCACAAGTTCACGAGTGGATTTTAAATAATATAGCTTCTGCTCTGGAAAATATTTCTGAAAGAATTTCTCCTAAAGAAAATGGCCTGCCCAGTTCCTCAGATCAAGATGTTCCCATGGCTGATGCCTGCACGAGTTCTACCAAGGGCTCGACATGTGTTAGAGGTTCAAGTTTTATCGAAGGAATCTCTAAATCATCACTTGTAAGGCATGCATCTGATCTTAAAGGTCCTTCTGTAAAGGTTTTAAACTGCCATGATTCAGTGATCTATATATTAGCACCTCTGAGATATGCCACAGTCTATGGATGCTCTGATGCTACAATTGTCCTTGGAGCTGTTGGAAAGGCCGTAAGAATTGAACACTGTGAGCGAGTTCATGTGATCACAGCAGCAAATCGAATCTGCATTGCTAACTGCCGCGAATGCATGTTTTTTCTCGGGGTAAACCAACGACCACTTATTGTTGGGGATAACCATAAGCTGCAGGTGAGTTTCACCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

421

Amino Acids

45.78

Weight (kDa)

5.62

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCC PF07986 332 - 417 2.3e-21 Tubulin binding cofactor C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1237
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 1237
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 434
AccII CGCG 2 cut(s) 78, 1182
AciI CCGC 8 cut(s) 54, 198, 290, 408, 411, 487, 762, 1180
AclWI GGATC 2 cut(s) 688, 725
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 2 cut(s) 724, 825
AcyI GRCGYC 1 cut(s) 437
AfiI CCNNNNNNNGG 4 cut(s) 265, 426, 599, 636
AflIII ACRYGT 1 cut(s) 914
AgsI TTSAA 3 cut(s) 665, 930, 1121
AjnI CCWGG 3 cut(s) 239, 297, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 7 cut(s) 115, 163, 481, 587, 797, 1097, 1243
AluI AGCT 7 cut(s) 115, 163, 481, 587, 797, 1097, 1243
Alw21I GWGCWC 2 cut(s) 252, 648
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 2 cut(s) 688, 725
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 1199
AoxI GGCC 5 cut(s) 300, 428, 531, 844, 1107
ApeKI GCWGC 5 cut(s) 200, 385, 478, 1151, 1243
ApoI RAATTY 2 cut(s) 724, 825
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 3 cut(s) 286, 532, 989
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 59, 1249, 1261
AvaI CYCGRG 1 cut(s) 1199
AvaII GGWCC 2 cut(s) 286, 989
BanII GRGCYC 2 cut(s) 21, 911
BauI CACGAG 3 cut(s) 245, 773, 892
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 252, 648
BbvI GCAGC 5 cut(s) 212, 372, 490, 1163, 1230
BccI CCATC 3 cut(s) 113, 520, 543
BceAI ACGGC 5 cut(s) 398, 415, 457, 483, 1094
BciT130I CCWGG 3 cut(s) 241, 299, 572
BciVI GTATCC 1 cut(s) 446
BclI TGATCA 1 cut(s) 1143
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 2 cut(s) 143, 260
BfmI CTRYAG 2 cut(s) 218, 1244
BfuAI ACCTGC 1 cut(s) 1237
BfuI GTATCC 1 cut(s) 446
BglII AGATCT 1 cut(s) 222
BisI GCNGC 9 cut(s) 198, 201, 386, 411, 479, 762, 1152, 1180, 1244
BlsI GCNGC 9 cut(s) 199, 202, 387, 412, 480, 763, 1153, 1181, 1245
Bme1390I CCNGG 4 cut(s) 188, 241, 299, 572
Bme18I GGWCC 2 cut(s) 286, 989
BmeT110I CYCGRG 1 cut(s) 1199
BmgT120I GGNCC 3 cut(s) 286, 532, 989
BmiI GGNNCC 2 cut(s) 288, 331
BmrFI CCNGG 4 cut(s) 188, 241, 299, 572
BmrI ACTGGG 1 cut(s) 846
BmsI GCATC 4 cut(s) 874, 983, 1058, 1066
BmuI ACTGGG 1 cut(s) 846
BpiI GAAGAC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 137, 718
BpuMI CCSGG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 7 cut(s) 71, 264, 630, 649, 876, 903, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 426, 599, 636
Bse1I ACTGG 1 cut(s) 852
Bse3DI GCAATG 1 cut(s) 1167
BseBI CCWGG 3 cut(s) 241, 299, 572
BseDI CCNNGG 7 cut(s) 71, 264, 630, 649, 876, 903, 1090
BseGI GGATG 3 cut(s) 105, 325, 1073
BseLI CCNNNNNNNGG 4 cut(s) 265, 426, 599, 636
BseMI GCAATG 1 cut(s) 1167
BseMII CTCAG 2 cut(s) 873, 1037
BseNI ACTGG 1 cut(s) 852
BseXI GCAGC 5 cut(s) 212, 372, 490, 1163, 1230
BsgI GTGCAG 1 cut(s) 874
Bsh1236I CGCG 2 cut(s) 78, 1182
BshFI GGCC 5 cut(s) 302, 430, 533, 846, 1109
BsiHKAI GWGCWC 2 cut(s) 252, 648
BsiHKCI CYCGRG 1 cut(s) 1199
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 131, 199
BslI CCNNNNNNNGG 4 cut(s) 265, 426, 599, 636
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 2 cut(s) 131, 199
BsmI GAATGC 1 cut(s) 1190
BsnI GGCC 5 cut(s) 302, 430, 533, 846, 1109
Bso31I GGTCTC 1 cut(s) 580
BsoBI CYCGRG 1 cut(s) 1199
Bsp1286I GDGCHC 4 cut(s) 21, 252, 648, 911
Bsp19I CCATGG 2 cut(s) 630, 876
BspACI CCGC 8 cut(s) 54, 198, 290, 408, 411, 487, 762, 1180
BspANI GGCC 5 cut(s) 302, 430, 533, 846, 1109
BspCNI CTCAG 2 cut(s) 872, 1038
BspFNI CGCG 2 cut(s) 78, 1182
BspLI GGNNCC 2 cut(s) 288, 331
BspMAI CTGCAG 2 cut(s) 222, 1248
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 2 cut(s) 688, 725
BspTNI GGTCTC 1 cut(s) 580
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 1167
BsrI ACTGG 1 cut(s) 852
BssECI CCNNGG 7 cut(s) 71, 264, 630, 649, 876, 903, 1090
BssNI GRCGYC 1 cut(s) 437
BssSI CACGAG 3 cut(s) 245, 773, 892
BssT1I CCWWGG 5 cut(s) 630, 649, 876, 903, 1090
Bst2BI CACGAG 3 cut(s) 245, 773, 892
Bst2UI CCWGG 3 cut(s) 241, 299, 572
Bst4CI ACNGT 3 cut(s) 582, 1060, 1127
Bst6I CTCTTC 1 cut(s) 522
BstACI GRCGYC 1 cut(s) 437
BstAPI GCANNNNNTGC 2 cut(s) 97, 484
BstC8I GCNNGC 7 cut(s) 8, 80, 98, 744, 848, 889, 972
BstDEI CTNAG 2 cut(s) 859, 1046
BstDSI CCRYGG 2 cut(s) 630, 876
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 3 cut(s) 105, 325, 1073
BstFNI CGCG 2 cut(s) 78, 1182
BstHHI GCGC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 580
BstMWI GCNNNNNNNGC 9 cut(s) 16, 88, 97, 169, 394, 416, 478, 484, 1185
BstNI CCWGG 3 cut(s) 241, 299, 572
BstNSI RCATGY 3 cut(s) 918, 974, 1192
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 4 cut(s) 186, 239, 297, 570
BstSFI CTRYAG 2 cut(s) 218, 1244
BstUI CGCG 2 cut(s) 78, 1182
BstV1I GCAGC 5 cut(s) 212, 372, 490, 1163, 1230
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 3 cut(s) 222, 680, 730
BstYI RGATCY 3 cut(s) 222, 680, 730
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 5 cut(s) 302, 430, 533, 846, 1109
BtgI CCRYGG 2 cut(s) 630, 876
BtsCI GGATG 3 cut(s) 105, 325, 1073
BtsIMutI CAGTG 3 cut(s) 578, 1029, 1123
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 7 cut(s) 8, 80, 98, 744, 848, 889, 972
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 286, 532, 989
CsiI ACCWGGT 1 cut(s) 570
CviAII CATG 9 cut(s) 92, 341, 631, 877, 915, 971, 1016, 1139, 1189
DdeI CTNAG 2 cut(s) 859, 1046
DraI TTTAAA 2 cut(s) 786, 1008
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 397
Eco130I CCWWGG 5 cut(s) 630, 649, 876, 903, 1090
Eco24I GRGCYC 2 cut(s) 21, 911
Eco31I GGTCTC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 286, 989
Eco88I CYCGRG 1 cut(s) 1199
Eco91I GGTNACC 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 989
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 239, 297, 570
EcoT14I CCWWGG 5 cut(s) 630, 649, 876, 903, 1090
EcoT22I ATGCAT 2 cut(s) 976, 1190
EcoT38I GRGCYC 2 cut(s) 21, 911
ErhI CCWWGG 5 cut(s) 630, 649, 876, 903, 1090
FaeI CATG 9 cut(s) 95, 344, 634, 880, 918, 974, 1019, 1142, 1192
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 2 cut(s) 131, 199
FatI CATG 9 cut(s) 91, 340, 630, 876, 914, 970, 1015, 1138, 1188
FauI CCCGC 2 cut(s) 61, 297
FbaI TGATCA 1 cut(s) 1143
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 9 cut(s) 198, 201, 386, 411, 479, 762, 1152, 1180, 1244
FokI GGATG 3 cut(s) 92, 332, 1080
FriOI GRGCYC 2 cut(s) 21, 911
Fsp4HI GCNGC 9 cut(s) 198, 201, 386, 411, 479, 762, 1152, 1180, 1244
FspBI CTAG 2 cut(s) 143, 260
GlaI GCGC 1 cut(s) 77
GluI GCNGC 9 cut(s) 198, 201, 386, 411, 479, 762, 1152, 1180, 1244
HaeIII GGCC 5 cut(s) 302, 430, 533, 846, 1109
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 9 cut(s) 95, 344, 634, 880, 918, 974, 1019, 1142, 1192
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 2 cut(s) 193, 435
HindII GTYRAC 2 cut(s) 193, 435
HinfI GANTC 9 cut(s) 64, 212, 281, 404, 614, 661, 945, 1019, 1161
HpaII CCGG 1 cut(s) 187
HphI GGTGA 3 cut(s) 59, 1249, 1261
Hpy166II GTNNAC 4 cut(s) 193, 435, 772, 1207
Hpy188III TCNNGA 4 cut(s) 734, 773, 806, 866
Hpy8I GTNNAC 4 cut(s) 193, 435, 772, 1207
Hpy99I CGWCG 9 cut(s) 31, 34, 37, 314, 436, 439, 442, 452, 504
HpyAV CCTTC 3 cut(s) 599, 935, 1002
HpyCH4III ACNGT 3 cut(s) 582, 1060, 1127
HpyCH4IV ACGT 2 cut(s) 26, 437
HpyF10VI GCNNNNNNNGC 9 cut(s) 16, 88, 97, 169, 394, 416, 478, 484, 1185
HpyF3I CTNAG 2 cut(s) 859, 1046
HpySE526I ACGT 2 cut(s) 26, 437
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 9 cut(s) 95, 344, 634, 880, 918, 974, 1019, 1142, 1192
HspAI GCGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 1143
LmnI GCTCC 4 cut(s) 329, 489, 715, 1094
Lsp1109I GCAGC 5 cut(s) 212, 372, 490, 1163, 1230
LweI GCATC 4 cut(s) 874, 983, 1058, 1066
MabI ACCWGGT 1 cut(s) 570
MaeI CTAG 2 cut(s) 143, 260
MaeII ACGT 2 cut(s) 26, 437
MaeIII GTNAC 2 cut(s) 566, 692
MbiI CCGCTC 1 cut(s) 292
MboII GAAGA 4 cut(s) 30, 112, 539, 623
MfeI CAATTG 2 cut(s) 12, 1083
MflI RGATCY 3 cut(s) 222, 680, 730
MhlI GDGCHC 4 cut(s) 21, 252, 648, 911
MluCI AATT 7 cut(s) 12, 380, 665, 724, 825, 1083, 1116
MlyI GAGTC 2 cut(s) 221, 290
MmeI TCCRAC 3 cut(s) 264, 307, 1081
Mph1103I ATGCAT 2 cut(s) 976, 1190
MseI TTAA 4 cut(s) 626, 785, 984, 1007
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 4 cut(s) 188, 241, 299, 572
MunI CAATTG 2 cut(s) 12, 1083
Mva1269I GAATGC 1 cut(s) 1190
MvaI CCWGG 3 cut(s) 241, 299, 572
MvnI CGCG 2 cut(s) 78, 1182
MwoI GCNNNNNNNGC 9 cut(s) 16, 88, 97, 169, 394, 416, 478, 484, 1185
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 2 cut(s) 630, 876
NlaIII CATG 9 cut(s) 95, 344, 634, 880, 918, 974, 1019, 1142, 1192
NlaIV GGNNCC 2 cut(s) 288, 331
NmeAIII GCCGAG 2 cut(s) 52, 204
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 2 cut(s) 976, 1190
NspI RCATGY 3 cut(s) 918, 974, 1192
PaeI GCATGC 1 cut(s) 974
PaqCI CACCTGC 1 cut(s) 1237
PciI ACATGT 1 cut(s) 914
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 38, 243
PctI GAATGC 1 cut(s) 1190
PfeI GAWTC 7 cut(s) 64, 404, 614, 661, 945, 1019, 1161
PkrI GCNGC 9 cut(s) 199, 202, 387, 412, 480, 763, 1153, 1181, 1245
PleI GAGTC 2 cut(s) 220, 289
PpsI GAGTC 2 cut(s) 220, 289
PpuMI RGGWCCY 1 cut(s) 989
PscI ACATGT 1 cut(s) 914
Psp5II RGGWCCY 1 cut(s) 989
Psp6I CCWGG 3 cut(s) 239, 297, 570
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 3 cut(s) 239, 297, 570
PspN4I GGNNCC 2 cut(s) 288, 331
PspPI GGNCC 3 cut(s) 286, 532, 989
PspPPI RGGWCCY 1 cut(s) 989
PstI CTGCAG 2 cut(s) 222, 1248
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 3 cut(s) 222, 680, 730
SalI GTCGAC 1 cut(s) 433
SaqAI TTAA 4 cut(s) 626, 785, 984, 1007
SatI GCNGC 9 cut(s) 198, 201, 386, 411, 479, 762, 1152, 1180, 1244
Sau96I GGNCC 3 cut(s) 286, 532, 989
SchI GAGTC 2 cut(s) 221, 290
ScrFI CCNGG 4 cut(s) 188, 241, 299, 572
SduI GDGCHC 4 cut(s) 21, 252, 648, 911
SexAI ACCWGGT 1 cut(s) 570
SfaNI GCATC 4 cut(s) 874, 983, 1058, 1066
SfcI CTRYAG 2 cut(s) 218, 1244
SgrDI CGTCGACG 1 cut(s) 433
SinI GGWCC 2 cut(s) 286, 989
SmlI CTYRAG 2 cut(s) 152, 697
SmoI CTYRAG 2 cut(s) 152, 697
SphI GCATGC 1 cut(s) 974
Sse9I AATT 7 cut(s) 12, 380, 665, 724, 825, 1083, 1116
SsiI CCGC 8 cut(s) 54, 198, 290, 408, 411, 487, 762, 1180
SspI AATATT 1 cut(s) 814
SspMI CTAG 2 cut(s) 143, 260
StyD4I CCNGG 4 cut(s) 186, 239, 297, 570
StyI CCWWGG 5 cut(s) 630, 649, 876, 903, 1090
TaaI ACNGT 3 cut(s) 582, 1060, 1127
TaiI ACGT 2 cut(s) 29, 440
TaqI TCGA 9 cut(s) 41, 87, 168, 252, 434, 447, 911, 939, 1159
TasI AATT 7 cut(s) 12, 380, 665, 724, 825, 1083, 1116
TauI GCSGC 4 cut(s) 200, 413, 764, 1182
TfiI GAWTC 7 cut(s) 64, 404, 614, 661, 945, 1019, 1161
Tru1I TTAA 4 cut(s) 626, 785, 984, 1007
Tru9I TTAA 4 cut(s) 626, 785, 984, 1007
TscAI CASTG 3 cut(s) 585, 1029, 1130
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 5 cut(s) 200, 385, 478, 1151, 1243
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 3 cut(s) 263, 540, 1127
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 3 cut(s) 585, 1029, 1130
VpaK11BI GGWCC 2 cut(s) 286, 989
XapI RAATTY 2 cut(s) 724, 825
XceI RCATGY 3 cut(s) 918, 974, 1192
XmiI GTMKAC 1 cut(s) 434
XspI CTAG 2 cut(s) 143, 260
ZraI GACGTC 1 cut(s) 438
Zsp2I ATGCAT 2 cut(s) 976, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.