AT2G43040

Tetratricopeptide repeats

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17895883 .. 17899556
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43040.2

Sequence Viewer

Length: 2115 bp
ATGCTCGGGAATCAATCCGCGGATTTTAGTGAGAAGGGGGAAGATGAGATCGTCAGACAGCTTTGTGCTAATGGGATTTGCATGAAAACAACTGAAGTTGAAGCAAAGCTTGATGAAGGAAATATTCAAGAAGCTGAATCTTCTTTGAGAGAAGGATTATCTCTCAATTTCGAGGAAGCAAGAGCACTTCTTGGAAGATTGGAATACCAAAGAGGGAATTTAGAAGGCGCACTTCGTGTCTTTGAAGGTATCGACCTTCAAGCAGCTATCCAGCGGTTACAGGTTTCCGTGCCTCTTGAGAAACCGGCTACTAAGAAAAACCGTCCCCGTGAACCGCAGCAATCAGTTTCTCAGCATGCTGCTAACTTGGTCCTTGAAGCTATCTACTTGAAAGCCAAATCCCTTCAAAAGCTTGGGAGAATAACTGAGGCTGCTCATGAATGCAAGAGTGTTCTTGATTCTGTTGAGAAGATATTTCAGCAAGGGATACCAGATGCTCAAGTGGATAACAAACTTCAAGAAACCGTTAGCCACGCCGTTGAACTACTTCCTGCGCTATGGAAAGAATCTGGTGATTATCAAGAAGCCATATCTGCTTATAGACGCGCGCTTTTAAGCCAATGGAATCTTGATAATGATTGTTGTGCAAGGATTCAAAAAGATTTTGCAGTCTTTCTTTTACATTCTGGAGTCGAAGCGAGTCCACCGAGTTTAGGTTCTCAGATAGAGGGATCGTACATACCTAGAAACAACATAGAAGAAGCCATTCTTCTTCTAATGATTCTTTTAAAGAAGTTTAACCTCGGGAAAGCGAAATGGGATCCGTCTGTGTTTGAGCACCTTACCTTTGCGTTATCTTTATGTAGTCAGACCGCGGTTCTCGCCAAGCAGCTTGAAGAAGTAATGCCTGGTGTGTTTAGCCGTATTGAGCGTTGGAACACTTTGGCTCTTTCTTATAGTGCAGCAGGTCAAAACAGTGCTGCAGTTAACCTTCTTAGAAAGTCTCTGCATAAACACGAACAACCCGATGATCTTGTGGCGCTTTTGTTAGCTGCTAAGCTTTGCAGTGAAGAGCCTTCTTTAGCTGCTGAAGGTACGGGTTATGCGCAGAGAGCGATAAACAATGCTCAAGGTATGGATGAGCATTTGAAAGGCGTTGGTTTGAGGATGTTAGGACTTTGTTTAGGGAAACAAGCGAAGGTTCCGACATCGGATTTTGAAAGATCTCGGCTGCAATCAGAATCATTGAAAGCATTAGATGGAGCTATAGCTTTTGAGCACAATAATCCTGATTTGATCTTTGAGTTAGGTGTTCAATACGCTGAGCAACGGAACTTAAAAGCTGCTTCCCGTTACGCCAAAGAGTTCATCGATGCAACGGGAGGGTCAGTGTTAAAAGGATGGAGATTTCTCGCGCTTGTTTTGTCAGCTCAACAACGGTTTTCAGAAGCAGAAGTTGTGACTGATGCTGCTTTAGATGAAACTGCAAAGTGGGATCAGGGACCTCTCTTGAGACTCAAAGCAAAGCTGAAAATCTCTCAGTCAAATCCAACAGAAGCCGTTGAGACTTATCGTTACCTTCTTGCATTGGTTCAAGCGCAAAGGAAATCTTTCGGACCTCTCAGAACTCTTTCTCAGATGGAGGAAGACAAAGTGAATGAGTTTGAAGTGTGGCATGGCTTGGCTTATCTTTACTCAAGCCTTTCGCATTGGAACGACGTAGAAGTCTGTCTGAAAAAAGCCGGAGAGCTGAAACAATACTCTGCTTCAATGTTGCATACAGAAGGTCGAATGTGGGAAGGACGAAAGGAGTTCAAACCCGCGCTAGCAGCTTTCTTGGACGGTTTATTACTAGACGGATCATCGGTTCCTTGCAAAGTAGCGGTTGGAGCGTTATTGTCCGAAAGAGGGAAAGATCATCAGCCAACTCTCCCCGTGGCTAGAAGTTTGCTCTCTGATGCATTGAGGATCGATCCAACAAACCGAAAAGCTTGGTATTACTTAGGAATGGTTCATAAATCTGATGGACGTATAGCTGATGCTACTGATTGCTTCCAAGCTGCTTCTATGCTTGAAGAGTCTGATCCTATTGAAAGCTTCTCAACCATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

704

Amino Acids

77.98

Weight (kDa)

5.65

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1724
Acc16I TGCGCA 1 cut(s) 1107
Acc36I ACCTGC 1 cut(s) 956
AccII CGCG 6 cut(s) 20, 606, 608, 875, 1415, 1823
AciI CCGC 8 cut(s) 18, 20, 274, 335, 873, 875, 1821, 1883
AclWI GGATC 8 cut(s) 739, 815, 828, 1503, 1867, 1967, 1976, 2078
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 114, 1110
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 2 cut(s) 737, 1096
AfiI CCNNNNNNNGG 2 cut(s) 713, 1908
AjnI CCWGG 1 cut(s) 907
AloI GAACNNNNNNTCC 2 cut(s) 1851, 1883
Alw21I GWGCWC 3 cut(s) 187, 840, 1281
Alw26I GTCTC 3 cut(s) 1008, 1507, 1559
AlwI GGATC 8 cut(s) 739, 815, 828, 1503, 1867, 1967, 1976, 2078
Ama87I CYCGRG 2 cut(s) 5, 803
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 4 cut(s) 546, 765, 1610, 1630
AspLEI GCGC 9 cut(s) 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825
AspS9I GGNCC 3 cut(s) 370, 1502, 1616
AsuHPI GGTGA 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 1825
AvaI CYCGRG 2 cut(s) 5, 803
AvaII GGWCC 3 cut(s) 370, 1502, 1616
BamHI GGATCC 1 cut(s) 820
BbsI GAAGAC 1 cut(s) 1653
Bbv12I GWGCWC 3 cut(s) 187, 840, 1281
BccI CCATC 4 cut(s) 1253, 1395, 1633, 2018
BceAI ACGGC 3 cut(s) 521, 906, 1544
BciT130I CCWGG 1 cut(s) 909
BciVI GTATCC 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 1008, 1507, 1559
BfaI CTAG 4 cut(s) 744, 1826, 1853, 1941
BfmI CTRYAG 2 cut(s) 981, 1266
BfoI RGCGCY 1 cut(s) 1043
BfuAI ACCTGC 1 cut(s) 956
BfuI GTATCC 1 cut(s) 480
BglII AGATCT 1 cut(s) 1223
BlpI GCTNAGC 2 cut(s) 1056, 1323
Bme1390I CCNGG 1 cut(s) 909
Bme18I GGWCC 3 cut(s) 370, 1502, 1616
BmeT110I CYCGRG 2 cut(s) 5, 803
BmgT120I GGNCC 3 cut(s) 370, 1502, 1616
BmiI GGNNCC 4 cut(s) 822, 1203, 1503, 1869
BmrFI CCNGG 1 cut(s) 909
BmsI GCATC 5 cut(s) 484, 1363, 1456, 1948, 2029
BmtI GCTAGC 1 cut(s) 1829
BpiI GAAGAC 1 cut(s) 1653
BpmI CTGGAG 1 cut(s) 708
Bpu1102I GCTNAGC 2 cut(s) 1056, 1323
BpuEI CTTGAG 5 cut(s) 317, 483, 1113, 1531, 1681
Bsa29I ATCGAT 2 cut(s) 1371, 1971
BsaJI CCNNGG 4 cut(s) 18, 802, 873, 1935
BsaXI ACNNNNNCTCC 2 cut(s) 1374, 1404
Bsc4I CCNNNNNNNGG 2 cut(s) 713, 1908
Bse118I RCCGGY 1 cut(s) 304
BseBI CCWGG 1 cut(s) 909
BseCI ATCGAT 2 cut(s) 1371, 1971
BseDI CCNNGG 4 cut(s) 18, 802, 873, 1935
BseGI GGATG 3 cut(s) 1144, 1173, 1406
BseLI CCNNNNNNNGG 2 cut(s) 713, 1908
BseMII CTCAG 7 cut(s) 365, 417, 734, 1314, 1553, 1636, 1649
BsePI GCGCGC 1 cut(s) 606
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 6 cut(s) 20, 606, 608, 875, 1415, 1823
BshVI ATCGAT 2 cut(s) 1371, 1971
BsiHKAI GWGCWC 3 cut(s) 187, 840, 1281
BsiHKCI CYCGRG 2 cut(s) 5, 803
BsiSI CCGG 2 cut(s) 305, 1743
BslFI GGGAC 2 cut(s) 309, 1515
BslI CCNNNNNNNGG 2 cut(s) 713, 1908
BsmAI GTCTC 3 cut(s) 1008, 1507, 1559
BsmFI GGGAC 2 cut(s) 309, 1515
BsmI GAATGC 1 cut(s) 446
BsoBI CYCGRG 2 cut(s) 5, 803
Bsp1286I GDGCHC 3 cut(s) 187, 840, 1281
Bsp1720I GCTNAGC 2 cut(s) 1056, 1323
BspACI CCGC 8 cut(s) 18, 20, 274, 335, 873, 875, 1821, 1883
BspCNI CTCAG 7 cut(s) 364, 418, 733, 1315, 1552, 1635, 1648
BspDI ATCGAT 2 cut(s) 1371, 1971
BspFNI CGCG 6 cut(s) 20, 606, 608, 875, 1415, 1823
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 4 cut(s) 822, 1203, 1503, 1869
BspMAI CTGCAG 1 cut(s) 985
BspMI ACCTGC 1 cut(s) 956
BspOI GCTAGC 1 cut(s) 1829
BspPI GGATC 8 cut(s) 739, 815, 828, 1503, 1867, 1967, 1976, 2078
BspQI GCTCTTC 1 cut(s) 1065
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 18, 802, 873, 1935
BssHII GCGCGC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 5 cut(s) 323, 526, 977, 1440, 1844
Bst6I CTCTTC 2 cut(s) 1065, 2070
BstC8I GCNNGC 3 cut(s) 357, 608, 1827
BstDSI CCRYGG 3 cut(s) 18, 873, 1935
BstF5I GGATG 3 cut(s) 1144, 1173, 1406
BstFNI CGCG 6 cut(s) 20, 606, 608, 875, 1415, 1823
BstH2I RGCGCY 1 cut(s) 1043
BstHHI GCGC 9 cut(s) 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825
BstMAI GTCTC 3 cut(s) 1008, 1507, 1559
BstMWI GCNNNNNNNGC 5 cut(s) 593, 881, 1112, 1829, 1889
BstNI CCWGG 1 cut(s) 909
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 907
BstSFI CTRYAG 2 cut(s) 981, 1266
BstUI CGCG 6 cut(s) 20, 606, 608, 875, 1415, 1823
BstV2I GAAGAC 1 cut(s) 1653
BstX2I RGATCY 2 cut(s) 820, 1223
BstYI RGATCY 2 cut(s) 820, 1223
Bsu15I ATCGAT 2 cut(s) 1371, 1971
BsuI GTATCC 1 cut(s) 480
BsuTUI ATCGAT 2 cut(s) 1371, 1971
BtgI CCRYGG 3 cut(s) 18, 873, 1935
BtsCI GGATG 3 cut(s) 1144, 1173, 1406
BtsI GCAGTG 1 cut(s) 1072
BtsIMutI CAGTG 3 cut(s) 982, 1072, 1395
BveI ACCTGC 1 cut(s) 956
Cac8I GCNNGC 3 cut(s) 357, 608, 1827
CciI TCATGA 1 cut(s) 436
CfoI GCGC 9 cut(s) 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 370, 1502, 1616
Cfr42I CCGCGG 2 cut(s) 21, 876
ClaI ATCGAT 2 cut(s) 1371, 1971
CseI GACGC 1 cut(s) 612
Csp6I GTAC 2 cut(s) 736, 1095
CviAII CATG 4 cut(s) 82, 356, 437, 1676
CviQI GTAC 2 cut(s) 736, 1095
DraI TTTAAA 1 cut(s) 789
DraIII CACNNNGTG 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 1724
DseDI GACNNNNNNGTC 1 cut(s) 1724
Eam1104I CTCTTC 2 cut(s) 1065, 2070
EarI CTCTTC 2 cut(s) 1065, 2070
Eco47I GGWCC 3 cut(s) 370, 1502, 1616
Eco57I CTGAAG 2 cut(s) 114, 1110
Eco88I CYCGRG 2 cut(s) 5, 803
EcoO109I RGGNCCY 1 cut(s) 1502
EcoRII CCWGG 1 cut(s) 907
EcoT22I ATGCAT 1 cut(s) 1963
FaeI CATG 4 cut(s) 85, 359, 440, 1679
FalI AAGNNNNNCTT 8 cut(s) 93, 125, 216, 248, 753, 785, 1594, 1626
FaqI GGGAC 2 cut(s) 309, 1515
FatI CATG 4 cut(s) 81, 355, 436, 1675
FauI CCCGC 1 cut(s) 1828
FokI GGATG 3 cut(s) 1151, 1180, 1413
FspBI CTAG 4 cut(s) 744, 1826, 1853, 1941
FspI TGCGCA 1 cut(s) 1107
GlaI GCGC 9 cut(s) 229, 555, 607, 609, 1041, 1107, 1416, 1599, 1824
GsuI CTGGAG 1 cut(s) 708
HaeII RGCGCY 1 cut(s) 1043
HapII CCGG 2 cut(s) 305, 1743
HgaI GACGC 1 cut(s) 612
HhaI GCGC 9 cut(s) 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825
Hin1II CATG 4 cut(s) 85, 359, 440, 1679
Hin6I GCGC 9 cut(s) 228, 554, 606, 608, 1040, 1106, 1415, 1598, 1823
HinP1I GCGC 9 cut(s) 228, 554, 606, 608, 1040, 1106, 1415, 1598, 1823
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 5 cut(s) 107, 410, 1058, 1989, 2095
HpaI GTTAAC 1 cut(s) 988
HpaII CCGG 2 cut(s) 305, 1743
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 332, 704, 988
Hpy8I GTNNAC 3 cut(s) 332, 704, 988
Hpy99I CGWCG 1 cut(s) 1721
HpyCH4III ACNGT 5 cut(s) 323, 526, 977, 1440, 1844
HpyCH4IV ACGT 2 cut(s) 1719, 2029
HpyF10VI GCNNNNNNNGC 5 cut(s) 593, 881, 1112, 1829, 1889
HpySE526I ACGT 2 cut(s) 1719, 2029
Hsp92II CATG 4 cut(s) 85, 359, 440, 1679
HspAI GCGC 9 cut(s) 228, 554, 606, 608, 1040, 1106, 1415, 1598, 1823
KspAI GTTAAC 1 cut(s) 988
KspI CCGCGG 2 cut(s) 21, 876
LguI GCTCTTC 1 cut(s) 1065
LmnI GCTCC 2 cut(s) 1262, 1889
LweI GCATC 5 cut(s) 484, 1363, 1456, 1948, 2029
MaeI CTAG 4 cut(s) 744, 1826, 1853, 1941
MaeII ACGT 2 cut(s) 1719, 2029
MaeIII GTNAC 4 cut(s) 276, 1352, 1459, 1574
MflI RGATCY 2 cut(s) 820, 1223
MhlI GDGCHC 3 cut(s) 187, 840, 1281
MluCI AATT 2 cut(s) 166, 217
MlyI GAGTC 4 cut(s) 699, 709, 1509, 2087
MmeI TCCRAC 5 cut(s) 914, 1229, 1574, 1867, 2000
Mph1103I ATGCAT 1 cut(s) 1963
MroXI GAANNNNTTC 4 cut(s) 546, 765, 1610, 1630
MseI TTAA 7 cut(s) 614, 788, 798, 987, 1337, 1394, 2113
MspA1I CMGCKG 3 cut(s) 20, 274, 875
MspI CCGG 2 cut(s) 305, 1743
MspR9I CCNGG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 1 cut(s) 909
MvnI CGCG 6 cut(s) 20, 606, 608, 875, 1415, 1823
MwoI GCNNNNNNNGC 5 cut(s) 593, 881, 1112, 1829, 1889
NheI GCTAGC 1 cut(s) 1825
NlaIII CATG 4 cut(s) 85, 359, 440, 1679
NlaIV GGNNCC 4 cut(s) 822, 1203, 1503, 1869
NmeAIII GCCGAG 1 cut(s) 1207
NmuCI GTSAC 1 cut(s) 1459
NsbI TGCGCA 1 cut(s) 1107
NsiI ATGCAT 1 cut(s) 1963
NspI RCATGY 1 cut(s) 359
PaeI GCATGC 1 cut(s) 359
PagI TCATGA 1 cut(s) 436
PauI GCGCGC 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PctI GAATGC 1 cut(s) 446
PdmI GAANNNNTTC 4 cut(s) 546, 765, 1610, 1630
PfeI GAWTC 8 cut(s) 10, 137, 458, 566, 625, 652, 781, 1241
PleI GAGTC 4 cut(s) 698, 708, 1509, 2086
PpsI GAGTC 4 cut(s) 698, 708, 1509, 2086
PpuMI RGGWCCY 1 cut(s) 1502
Psp5II RGGWCCY 1 cut(s) 1502
Psp6I CCWGG 1 cut(s) 907
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 4 cut(s) 822, 1203, 1503, 1869
PspPI GGNCC 3 cut(s) 370, 1502, 1616
PspPPI RGGWCCY 1 cut(s) 1502
PstI CTGCAG 1 cut(s) 985
PsuI RGATCY 2 cut(s) 820, 1223
PteI GCGCGC 1 cut(s) 606
RsaI GTAC 2 cut(s) 737, 1096
RsaNI GTAC 2 cut(s) 736, 1095
SacII CCGCGG 2 cut(s) 21, 876
SapI GCTCTTC 1 cut(s) 1065
SaqAI TTAA 7 cut(s) 614, 788, 798, 987, 1337, 1394, 2113
Sau96I GGNCC 3 cut(s) 370, 1502, 1616
SchI GAGTC 4 cut(s) 699, 709, 1509, 2087
ScrFI CCNGG 1 cut(s) 909
SduI GDGCHC 3 cut(s) 187, 840, 1281
SfaNI GCATC 5 cut(s) 484, 1363, 1456, 1948, 2029
SfcI CTRYAG 2 cut(s) 981, 1266
Sfr303I CCGCGG 2 cut(s) 21, 876
SgrBI CCGCGG 2 cut(s) 21, 876
SinI GGWCC 3 cut(s) 370, 1502, 1616
SmlI CTYRAG 5 cut(s) 296, 498, 1128, 1510, 1696
SmoI CTYRAG 5 cut(s) 296, 498, 1128, 1510, 1696
SphI GCATGC 1 cut(s) 359
Sse9I AATT 2 cut(s) 166, 217
SsiI CCGC 8 cut(s) 18, 20, 274, 335, 873, 875, 1821, 1883
SspI AATATT 1 cut(s) 124
SspMI CTAG 4 cut(s) 744, 1826, 1853, 1941
StyD4I CCNGG 1 cut(s) 907
TaaI ACNGT 5 cut(s) 323, 526, 977, 1440, 1844
TaiI ACGT 2 cut(s) 1722, 2032
TaqI TCGA 6 cut(s) 171, 252, 693, 1371, 1789, 1971
TasI AATT 2 cut(s) 166, 217
TfiI GAWTC 8 cut(s) 10, 137, 458, 566, 625, 652, 781, 1241
Tru1I TTAA 7 cut(s) 614, 788, 798, 987, 1337, 1394, 2113
Tru9I TTAA 7 cut(s) 614, 788, 798, 987, 1337, 1394, 2113
TscAI CASTG 3 cut(s) 982, 1072, 1395
TseFI GTSAC 1 cut(s) 1459
Tsp45I GTSAC 1 cut(s) 1459
TspDTI ATGAA 6 cut(s) 98, 129, 453, 1357, 1494, 2003
TspGWI ACGGA 4 cut(s) 277, 813, 1345, 1872
TspRI CASTG 3 cut(s) 982, 1072, 1395
VpaK11BI GGWCC 3 cut(s) 370, 1502, 1616
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 359
XmnI GAANNNNTTC 4 cut(s) 546, 765, 1610, 1630
XspI CTAG 4 cut(s) 744, 1826, 1853, 1941
Zsp2I ATGCAT 1 cut(s) 1963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.