Tetratricopeptide repeats
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43040 AT2G43040 |
| fragaria_vesca | FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 |
| malus_domestica | MD09G1145800.v1.1 MD17G1132300.v1.1 |
| prunus_persica | Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1 |
| pyrus_communis | pycom09g06610 pycom17g12580 pycom17g12590 |
| rosa_chinensis | RchiOBHm_Chr2g0152551 |
| rosa_laevigata | RLG00000020645 |
| rosa_multiflora | Rmu_co8464321.1_g000001 Rmu_sc0014904.1_g000001 Rmu_sc0027677.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00095610 |
| rosa_rugosa | Rorug02G0434500 |
| rosa_samantha | Rh2AG495700 Rh2BG507500 Rh2CG481900 Rh2DG518800 |
| rosa_wichuraiana | Rw2G040780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1724 |
| Acc16I | TGCGCA | 1 cut(s) | 1107 |
| Acc36I | ACCTGC | 1 cut(s) | 956 |
| AccII | CGCG | 6 cut(s) | 20, 606, 608, 875, 1415, 1823 |
| AciI | CCGC | 8 cut(s) | 18, 20, 274, 335, 873, 875, 1821, 1883 |
| AclWI | GGATC | 8 cut(s) | 739, 815, 828, 1503, 1867, 1967, 1976, 2078 |
| AcsI | RAATTY | 1 cut(s) | 217 |
| AcuI | CTGAAG | 2 cut(s) | 114, 1110 |
| AdeI | CACNNNGTG | 1 cut(s) | 236 |
| AfaI | GTAC | 2 cut(s) | 737, 1096 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 713, 1908 |
| AjnI | CCWGG | 1 cut(s) | 907 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1851, 1883 |
| Alw21I | GWGCWC | 3 cut(s) | 187, 840, 1281 |
| Alw26I | GTCTC | 3 cut(s) | 1008, 1507, 1559 |
| AlwI | GGATC | 8 cut(s) | 739, 815, 828, 1503, 1867, 1967, 1976, 2078 |
| Ama87I | CYCGRG | 2 cut(s) | 5, 803 |
| ApoI | RAATTY | 1 cut(s) | 217 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 546, 765, 1610, 1630 |
| AspLEI | GCGC | 9 cut(s) | 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825 |
| AspS9I | GGNCC | 3 cut(s) | 370, 1502, 1616 |
| AsuHPI | GGTGA | 1 cut(s) | 584 |
| AsuNHI | GCTAGC | 1 cut(s) | 1825 |
| AvaI | CYCGRG | 2 cut(s) | 5, 803 |
| AvaII | GGWCC | 3 cut(s) | 370, 1502, 1616 |
| BamHI | GGATCC | 1 cut(s) | 820 |
| BbsI | GAAGAC | 1 cut(s) | 1653 |
| Bbv12I | GWGCWC | 3 cut(s) | 187, 840, 1281 |
| BccI | CCATC | 4 cut(s) | 1253, 1395, 1633, 2018 |
| BceAI | ACGGC | 3 cut(s) | 521, 906, 1544 |
| BciT130I | CCWGG | 1 cut(s) | 909 |
| BciVI | GTATCC | 1 cut(s) | 480 |
| BcoDI | GTCTC | 3 cut(s) | 1008, 1507, 1559 |
| BfaI | CTAG | 4 cut(s) | 744, 1826, 1853, 1941 |
| BfmI | CTRYAG | 2 cut(s) | 981, 1266 |
| BfoI | RGCGCY | 1 cut(s) | 1043 |
| BfuAI | ACCTGC | 1 cut(s) | 956 |
| BfuI | GTATCC | 1 cut(s) | 480 |
| BglII | AGATCT | 1 cut(s) | 1223 |
| BlpI | GCTNAGC | 2 cut(s) | 1056, 1323 |
| Bme1390I | CCNGG | 1 cut(s) | 909 |
| Bme18I | GGWCC | 3 cut(s) | 370, 1502, 1616 |
| BmeT110I | CYCGRG | 2 cut(s) | 5, 803 |
| BmgT120I | GGNCC | 3 cut(s) | 370, 1502, 1616 |
| BmiI | GGNNCC | 4 cut(s) | 822, 1203, 1503, 1869 |
| BmrFI | CCNGG | 1 cut(s) | 909 |
| BmsI | GCATC | 5 cut(s) | 484, 1363, 1456, 1948, 2029 |
| BmtI | GCTAGC | 1 cut(s) | 1829 |
| BpiI | GAAGAC | 1 cut(s) | 1653 |
| BpmI | CTGGAG | 1 cut(s) | 708 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1056, 1323 |
| BpuEI | CTTGAG | 5 cut(s) | 317, 483, 1113, 1531, 1681 |
| Bsa29I | ATCGAT | 2 cut(s) | 1371, 1971 |
| BsaJI | CCNNGG | 4 cut(s) | 18, 802, 873, 1935 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1374, 1404 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 713, 1908 |
| Bse118I | RCCGGY | 1 cut(s) | 304 |
| BseBI | CCWGG | 1 cut(s) | 909 |
| BseCI | ATCGAT | 2 cut(s) | 1371, 1971 |
| BseDI | CCNNGG | 4 cut(s) | 18, 802, 873, 1935 |
| BseGI | GGATG | 3 cut(s) | 1144, 1173, 1406 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 713, 1908 |
| BseMII | CTCAG | 7 cut(s) | 365, 417, 734, 1314, 1553, 1636, 1649 |
| BsePI | GCGCGC | 1 cut(s) | 606 |
| BsgI | GTGCAG | 1 cut(s) | 981 |
| Bsh1236I | CGCG | 6 cut(s) | 20, 606, 608, 875, 1415, 1823 |
| BshVI | ATCGAT | 2 cut(s) | 1371, 1971 |
| BsiHKAI | GWGCWC | 3 cut(s) | 187, 840, 1281 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5, 803 |
| BsiSI | CCGG | 2 cut(s) | 305, 1743 |
| BslFI | GGGAC | 2 cut(s) | 309, 1515 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 713, 1908 |
| BsmAI | GTCTC | 3 cut(s) | 1008, 1507, 1559 |
| BsmFI | GGGAC | 2 cut(s) | 309, 1515 |
| BsmI | GAATGC | 1 cut(s) | 446 |
| BsoBI | CYCGRG | 2 cut(s) | 5, 803 |
| Bsp1286I | GDGCHC | 3 cut(s) | 187, 840, 1281 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1056, 1323 |
| BspACI | CCGC | 8 cut(s) | 18, 20, 274, 335, 873, 875, 1821, 1883 |
| BspCNI | CTCAG | 7 cut(s) | 364, 418, 733, 1315, 1552, 1635, 1648 |
| BspDI | ATCGAT | 2 cut(s) | 1371, 1971 |
| BspFNI | CGCG | 6 cut(s) | 20, 606, 608, 875, 1415, 1823 |
| BspHI | TCATGA | 1 cut(s) | 436 |
| BspLI | GGNNCC | 4 cut(s) | 822, 1203, 1503, 1869 |
| BspMAI | CTGCAG | 1 cut(s) | 985 |
| BspMI | ACCTGC | 1 cut(s) | 956 |
| BspOI | GCTAGC | 1 cut(s) | 1829 |
| BspPI | GGATC | 8 cut(s) | 739, 815, 828, 1503, 1867, 1967, 1976, 2078 |
| BspQI | GCTCTTC | 1 cut(s) | 1065 |
| BsrFI | RCCGGY | 1 cut(s) | 304 |
| BssAI | RCCGGY | 1 cut(s) | 304 |
| BssECI | CCNNGG | 4 cut(s) | 18, 802, 873, 1935 |
| BssHII | GCGCGC | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 1 cut(s) | 909 |
| Bst4CI | ACNGT | 5 cut(s) | 323, 526, 977, 1440, 1844 |
| Bst6I | CTCTTC | 2 cut(s) | 1065, 2070 |
| BstC8I | GCNNGC | 3 cut(s) | 357, 608, 1827 |
| BstDSI | CCRYGG | 3 cut(s) | 18, 873, 1935 |
| BstF5I | GGATG | 3 cut(s) | 1144, 1173, 1406 |
| BstFNI | CGCG | 6 cut(s) | 20, 606, 608, 875, 1415, 1823 |
| BstH2I | RGCGCY | 1 cut(s) | 1043 |
| BstHHI | GCGC | 9 cut(s) | 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825 |
| BstMAI | GTCTC | 3 cut(s) | 1008, 1507, 1559 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 593, 881, 1112, 1829, 1889 |
| BstNI | CCWGG | 1 cut(s) | 909 |
| BstNSI | RCATGY | 1 cut(s) | 359 |
| BstSCI | CCNGG | 1 cut(s) | 907 |
| BstSFI | CTRYAG | 2 cut(s) | 981, 1266 |
| BstUI | CGCG | 6 cut(s) | 20, 606, 608, 875, 1415, 1823 |
| BstV2I | GAAGAC | 1 cut(s) | 1653 |
| BstX2I | RGATCY | 2 cut(s) | 820, 1223 |
| BstYI | RGATCY | 2 cut(s) | 820, 1223 |
| Bsu15I | ATCGAT | 2 cut(s) | 1371, 1971 |
| BsuI | GTATCC | 1 cut(s) | 480 |
| BsuTUI | ATCGAT | 2 cut(s) | 1371, 1971 |
| BtgI | CCRYGG | 3 cut(s) | 18, 873, 1935 |
| BtsCI | GGATG | 3 cut(s) | 1144, 1173, 1406 |
| BtsI | GCAGTG | 1 cut(s) | 1072 |
| BtsIMutI | CAGTG | 3 cut(s) | 982, 1072, 1395 |
| BveI | ACCTGC | 1 cut(s) | 956 |
| Cac8I | GCNNGC | 3 cut(s) | 357, 608, 1827 |
| CciI | TCATGA | 1 cut(s) | 436 |
| CfoI | GCGC | 9 cut(s) | 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825 |
| Cfr10I | RCCGGY | 1 cut(s) | 304 |
| Cfr13I | GGNCC | 3 cut(s) | 370, 1502, 1616 |
| Cfr42I | CCGCGG | 2 cut(s) | 21, 876 |
| ClaI | ATCGAT | 2 cut(s) | 1371, 1971 |
| CseI | GACGC | 1 cut(s) | 612 |
| Csp6I | GTAC | 2 cut(s) | 736, 1095 |
| CviAII | CATG | 4 cut(s) | 82, 356, 437, 1676 |
| CviQI | GTAC | 2 cut(s) | 736, 1095 |
| DraI | TTTAAA | 1 cut(s) | 789 |
| DraIII | CACNNNGTG | 1 cut(s) | 236 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1724 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1724 |
| Eam1104I | CTCTTC | 2 cut(s) | 1065, 2070 |
| EarI | CTCTTC | 2 cut(s) | 1065, 2070 |
| Eco47I | GGWCC | 3 cut(s) | 370, 1502, 1616 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 1110 |
| Eco88I | CYCGRG | 2 cut(s) | 5, 803 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1502 |
| EcoRII | CCWGG | 1 cut(s) | 907 |
| EcoT22I | ATGCAT | 1 cut(s) | 1963 |
| FaeI | CATG | 4 cut(s) | 85, 359, 440, 1679 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 93, 125, 216, 248, 753, 785, 1594, 1626 |
| FaqI | GGGAC | 2 cut(s) | 309, 1515 |
| FatI | CATG | 4 cut(s) | 81, 355, 436, 1675 |
| FauI | CCCGC | 1 cut(s) | 1828 |
| FokI | GGATG | 3 cut(s) | 1151, 1180, 1413 |
| FspBI | CTAG | 4 cut(s) | 744, 1826, 1853, 1941 |
| FspI | TGCGCA | 1 cut(s) | 1107 |
| GlaI | GCGC | 9 cut(s) | 229, 555, 607, 609, 1041, 1107, 1416, 1599, 1824 |
| GsuI | CTGGAG | 1 cut(s) | 708 |
| HaeII | RGCGCY | 1 cut(s) | 1043 |
| HapII | CCGG | 2 cut(s) | 305, 1743 |
| HgaI | GACGC | 1 cut(s) | 612 |
| HhaI | GCGC | 9 cut(s) | 230, 556, 608, 610, 1042, 1108, 1417, 1600, 1825 |
| Hin1II | CATG | 4 cut(s) | 85, 359, 440, 1679 |
| Hin6I | GCGC | 9 cut(s) | 228, 554, 606, 608, 1040, 1106, 1415, 1598, 1823 |
| HinP1I | GCGC | 9 cut(s) | 228, 554, 606, 608, 1040, 1106, 1415, 1598, 1823 |
| HincII | GTYRAC | 1 cut(s) | 988 |
| HindII | GTYRAC | 1 cut(s) | 988 |
| HindIII | AAGCTT | 5 cut(s) | 107, 410, 1058, 1989, 2095 |
| HpaI | GTTAAC | 1 cut(s) | 988 |
| HpaII | CCGG | 2 cut(s) | 305, 1743 |
| HphI | GGTGA | 1 cut(s) | 584 |
| Hpy166II | GTNNAC | 3 cut(s) | 332, 704, 988 |
| Hpy8I | GTNNAC | 3 cut(s) | 332, 704, 988 |
| Hpy99I | CGWCG | 1 cut(s) | 1721 |
| HpyCH4III | ACNGT | 5 cut(s) | 323, 526, 977, 1440, 1844 |
| HpyCH4IV | ACGT | 2 cut(s) | 1719, 2029 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 593, 881, 1112, 1829, 1889 |
| HpySE526I | ACGT | 2 cut(s) | 1719, 2029 |
| Hsp92II | CATG | 4 cut(s) | 85, 359, 440, 1679 |
| HspAI | GCGC | 9 cut(s) | 228, 554, 606, 608, 1040, 1106, 1415, 1598, 1823 |
| KspAI | GTTAAC | 1 cut(s) | 988 |
| KspI | CCGCGG | 2 cut(s) | 21, 876 |
| LguI | GCTCTTC | 1 cut(s) | 1065 |
| LmnI | GCTCC | 2 cut(s) | 1262, 1889 |
| LweI | GCATC | 5 cut(s) | 484, 1363, 1456, 1948, 2029 |
| MaeI | CTAG | 4 cut(s) | 744, 1826, 1853, 1941 |
| MaeII | ACGT | 2 cut(s) | 1719, 2029 |
| MaeIII | GTNAC | 4 cut(s) | 276, 1352, 1459, 1574 |
| MflI | RGATCY | 2 cut(s) | 820, 1223 |
| MhlI | GDGCHC | 3 cut(s) | 187, 840, 1281 |
| MluCI | AATT | 2 cut(s) | 166, 217 |
| MlyI | GAGTC | 4 cut(s) | 699, 709, 1509, 2087 |
| MmeI | TCCRAC | 5 cut(s) | 914, 1229, 1574, 1867, 2000 |
| Mph1103I | ATGCAT | 1 cut(s) | 1963 |
| MroXI | GAANNNNTTC | 4 cut(s) | 546, 765, 1610, 1630 |
| MseI | TTAA | 7 cut(s) | 614, 788, 798, 987, 1337, 1394, 2113 |
| MspA1I | CMGCKG | 3 cut(s) | 20, 274, 875 |
| MspI | CCGG | 2 cut(s) | 305, 1743 |
| MspR9I | CCNGG | 1 cut(s) | 909 |
| Mva1269I | GAATGC | 1 cut(s) | 446 |
| MvaI | CCWGG | 1 cut(s) | 909 |
| MvnI | CGCG | 6 cut(s) | 20, 606, 608, 875, 1415, 1823 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 593, 881, 1112, 1829, 1889 |
| NheI | GCTAGC | 1 cut(s) | 1825 |
| NlaIII | CATG | 4 cut(s) | 85, 359, 440, 1679 |
| NlaIV | GGNNCC | 4 cut(s) | 822, 1203, 1503, 1869 |
| NmeAIII | GCCGAG | 1 cut(s) | 1207 |
| NmuCI | GTSAC | 1 cut(s) | 1459 |
| NsbI | TGCGCA | 1 cut(s) | 1107 |
| NsiI | ATGCAT | 1 cut(s) | 1963 |
| NspI | RCATGY | 1 cut(s) | 359 |
| PaeI | GCATGC | 1 cut(s) | 359 |
| PagI | TCATGA | 1 cut(s) | 436 |
| PauI | GCGCGC | 1 cut(s) | 606 |
| PciSI | GCTCTTC | 1 cut(s) | 1065 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1023 |
| PctI | GAATGC | 1 cut(s) | 446 |
| PdmI | GAANNNNTTC | 4 cut(s) | 546, 765, 1610, 1630 |
| PfeI | GAWTC | 8 cut(s) | 10, 137, 458, 566, 625, 652, 781, 1241 |
| PleI | GAGTC | 4 cut(s) | 698, 708, 1509, 2086 |
| PpsI | GAGTC | 4 cut(s) | 698, 708, 1509, 2086 |
| PpuMI | RGGWCCY | 1 cut(s) | 1502 |
| Psp5II | RGGWCCY | 1 cut(s) | 1502 |
| Psp6I | CCWGG | 1 cut(s) | 907 |
| PspGI | CCWGG | 1 cut(s) | 907 |
| PspN4I | GGNNCC | 4 cut(s) | 822, 1203, 1503, 1869 |
| PspPI | GGNCC | 3 cut(s) | 370, 1502, 1616 |
| PspPPI | RGGWCCY | 1 cut(s) | 1502 |
| PstI | CTGCAG | 1 cut(s) | 985 |
| PsuI | RGATCY | 2 cut(s) | 820, 1223 |
| PteI | GCGCGC | 1 cut(s) | 606 |
| RsaI | GTAC | 2 cut(s) | 737, 1096 |
| RsaNI | GTAC | 2 cut(s) | 736, 1095 |
| SacII | CCGCGG | 2 cut(s) | 21, 876 |
| SapI | GCTCTTC | 1 cut(s) | 1065 |
| SaqAI | TTAA | 7 cut(s) | 614, 788, 798, 987, 1337, 1394, 2113 |
| Sau96I | GGNCC | 3 cut(s) | 370, 1502, 1616 |
| SchI | GAGTC | 4 cut(s) | 699, 709, 1509, 2087 |
| ScrFI | CCNGG | 1 cut(s) | 909 |
| SduI | GDGCHC | 3 cut(s) | 187, 840, 1281 |
| SfaNI | GCATC | 5 cut(s) | 484, 1363, 1456, 1948, 2029 |
| SfcI | CTRYAG | 2 cut(s) | 981, 1266 |
| Sfr303I | CCGCGG | 2 cut(s) | 21, 876 |
| SgrBI | CCGCGG | 2 cut(s) | 21, 876 |
| SinI | GGWCC | 3 cut(s) | 370, 1502, 1616 |
| SmlI | CTYRAG | 5 cut(s) | 296, 498, 1128, 1510, 1696 |
| SmoI | CTYRAG | 5 cut(s) | 296, 498, 1128, 1510, 1696 |
| SphI | GCATGC | 1 cut(s) | 359 |
| Sse9I | AATT | 2 cut(s) | 166, 217 |
| SsiI | CCGC | 8 cut(s) | 18, 20, 274, 335, 873, 875, 1821, 1883 |
| SspI | AATATT | 1 cut(s) | 124 |
| SspMI | CTAG | 4 cut(s) | 744, 1826, 1853, 1941 |
| StyD4I | CCNGG | 1 cut(s) | 907 |
| TaaI | ACNGT | 5 cut(s) | 323, 526, 977, 1440, 1844 |
| TaiI | ACGT | 2 cut(s) | 1722, 2032 |
| TaqI | TCGA | 6 cut(s) | 171, 252, 693, 1371, 1789, 1971 |
| TasI | AATT | 2 cut(s) | 166, 217 |
| TfiI | GAWTC | 8 cut(s) | 10, 137, 458, 566, 625, 652, 781, 1241 |
| Tru1I | TTAA | 7 cut(s) | 614, 788, 798, 987, 1337, 1394, 2113 |
| Tru9I | TTAA | 7 cut(s) | 614, 788, 798, 987, 1337, 1394, 2113 |
| TscAI | CASTG | 3 cut(s) | 982, 1072, 1395 |
| TseFI | GTSAC | 1 cut(s) | 1459 |
| Tsp45I | GTSAC | 1 cut(s) | 1459 |
| TspDTI | ATGAA | 6 cut(s) | 98, 129, 453, 1357, 1494, 2003 |
| TspGWI | ACGGA | 4 cut(s) | 277, 813, 1345, 1872 |
| TspRI | CASTG | 3 cut(s) | 982, 1072, 1395 |
| VpaK11BI | GGWCC | 3 cut(s) | 370, 1502, 1616 |
| XapI | RAATTY | 1 cut(s) | 217 |
| XceI | RCATGY | 1 cut(s) | 359 |
| XmnI | GAANNNNTTC | 4 cut(s) | 546, 765, 1610, 1630 |
| XspI | CTAG | 4 cut(s) | 744, 1826, 1853, 1941 |
| Zsp2I | ATGCAT | 1 cut(s) | 1963 |