Rh2CG481900

tetratricopeptide repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
64664938 .. 64670042
5105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG481900.1

Sequence Viewer

Length: 1776 bp
ATGGATTCTGGCGAGTATGAGGAAGGCATGGTGGTTGAATTCTCTGCTAATGGGAATTCCATGAAATCAACTGATGTTGAAGCCAAGCTGGATGAAGGAAATATTCACGAGGCAGAATCTTCATTACGAGAGGGGTTATCACTCAATTTTGAGGAAGCAAGAGCCCTTCTTGGAAAGTTAGAGTACCAAAGAGGTAATCTTGAAGGTGCTCTTCGTGTGTTTGATGGCATCGATCTGCAAGCAGCTATAGAGCGATTGCAACCTTCTATTACTGAGAAAACACCTTCTAAGAAAGGCCGGTCTAGAGCTGATTCACAGCATTCAGTCTCGCAGCATGCTGCCACCCTTGTTCTTGATGCCATATACTTGAAAGCCAAGTCTCTTCATAAGCTTGGGAGATTAACAGAGGCTGCTCATGAATGTAAAAAAGTGCTTGATGCCGTGGAAAAAATATTCCATCAAGGAATACCTGATGCACAAGTGGATAGTAGATTGCAGGAGACAGTCAGTCGAGCTGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTCCTATCAAGAAACAATCTCTGCTTATAGGCGTGCCCTACTTAGTCAGTGGAATCTGGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTGTGTTTCTGCTATATAGTGGACTAGAGGCTGGTCCACCCAGTTTAGGTGTTCAGGTTGAAGGTTCATATGTGCCTAAAAATAATCTGGAAGAGGCAATCCTGCTTTTAATGATCCTTTTGAGAAATTTGTTCCAAGGTAAAACAAAATGGGATCCATCACTGACAGAACATCTAACATTTGCACTATCTATATGCAACCAGACTTGTGTATTAGCAAAGCAACTTGAAGAGATCATGCCTGGAGTATATCCACGCGTTGATCGTTGGAATTCTCTAGCTCTGTGTTATAGTGGAGCAGGACAGAACAAAGCCGCTTTAAATCTGTTGAGGAAGTCTTTACACAAACATGAACGACCAGATGAACTCATGCCACTGTTATTGGCTGCCAAAATTTGCAGTGAGGATTCCCATGTTGCAGCTGAGGGAGTTGGATATGCACAGAGGGCTGTTAGTAATTCTCAGGGTAAGGATGAACATTTAAAGGCAGTGGGTCTTCGCTTGTTGGGTCTTTGTTTGGGGAAGCAAGCTAAAATTTCTTCCTCTGACTTTGAGAGGTCTCGTCTTCAGTCTGAAGCACTAAAATCACTAAGTGAGGCCGTTGCTTTGGAGAAGAACAATTCAGATTTAATTTTTGAGTTGGGGGTTCAATATGCAGAGCACAGGAATCTAAATACAGCTTTGCGCTATGCAAAGAAGTACGTTGATGAAACAGGGGGATCCGTATTAAAAGGTTGGCGGTTGCTTGCTCTAGTTTTATCTGCTCAACAGCGATTTTCAGAGGCTCATGTAGTCACTGATGCGGCTTTGGATGAGACTGCAAAATGGGAGCAAGGGCCACTGCTCAGGCTTAAAGCAAAGCTGAAAGTCTCCCAATCCTTACCGATGGATGCAATTGAAACTTACCGTTACCTTCTTGCTTTGGTTCAAGCACAAAGGAAATCTTTTGGGCCTCTCAGAGTTAATTCTCAGACCGAGGATGATAAAGTCAATGAATTTGAAGTTTGGCATGGTTTGTCAAACTTATATGCCAGCCTTTCATATTGGAAGGACGCAGAAATATGTTTGGGTAAAGCCCGAGAGCTGAAGCATTACGCTGCAGAAACACTGCACACAGAAGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

591

Amino Acids

65.73

Weight (kDa)

6.39

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 903
AciI CCGC 3 cut(s) 960, 1384, 1448
AclWI GGATC 5 cut(s) 754, 794, 807, 1359, 1372
AcsI RAATTY 8 cut(s) 38, 55, 630, 772, 916, 1038, 1179, 1640
AcuI CTGAAG 3 cut(s) 1196, 1239, 1751
AdeI CACNNNGTG 1 cut(s) 1238
AfaI GTAC 2 cut(s) 185, 1346
AfiI CCNNNNNNNGG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 901
AhdI GACNNNNNGTC 1 cut(s) 507
AjnI CCWGG 1 cut(s) 886
Alw21I GWGCWC 3 cut(s) 211, 525, 1308
Alw26I GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
AlwI GGATC 5 cut(s) 754, 794, 807, 1359, 1372
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 1722
AoxI GGCC 4 cut(s) 295, 1242, 1481, 1595
ApeKI GCWGC 7 cut(s) 242, 331, 338, 410, 1031, 1064, 1742
ApoI RAATTY 8 cut(s) 38, 55, 630, 772, 916, 1038, 1179, 1640
AspLEI GCGC 1 cut(s) 1332
AspS9I GGNCC 3 cut(s) 680, 1481, 1595
AvaI CYCGRG 1 cut(s) 1722
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 589
BamHI GGATCC 2 cut(s) 799, 1364
BanII GRGCYC 2 cut(s) 166, 525
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BauI CACGAG 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 1133, 1202
Bbv12I GWGCWC 3 cut(s) 211, 525, 1308
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 7 cut(s) 254, 325, 343, 397, 1018, 1076, 1729
BccI CCATC 4 cut(s) 218, 465, 811, 1525
BceAI ACGGC 2 cut(s) 425, 1229
BciT130I CCWGG 1 cut(s) 888
BcoDI GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
BfaI CTAG 4 cut(s) 303, 671, 923, 1397
BfmI CTRYAG 3 cut(s) 246, 516, 1743
BisI GCNGC 9 cut(s) 243, 332, 339, 411, 960, 1032, 1065, 1449, 1743
BlsI GCNGC 9 cut(s) 244, 333, 340, 412, 961, 1033, 1066, 1450, 1744
Bme1390I CCNGG 1 cut(s) 888
Bme18I GGWCC 1 cut(s) 680
BmeRI GACNNNNNGTC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 1722
BmgT120I GGNCC 3 cut(s) 680, 1481, 1595
BmiI GGNNCC 3 cut(s) 553, 801, 1366
BmrFI CCNGG 1 cut(s) 888
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 6 cut(s) 237, 346, 427, 463, 1435, 1525
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 1133, 1202
BpmI CTGGAG 1 cut(s) 909
Bpu10I CCTNAGC 2 cut(s) 1068, 1490
Bsa29I ATCGAT 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 1209
BsaJI CCNNGG 3 cut(s) 441, 781, 1620
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 888
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 441, 781, 1620
BseGI GGATG 5 cut(s) 97, 1123, 1462, 1540, 1630
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMII CTCAG 6 cut(s) 264, 1059, 1121, 1504, 1615, 1628
BseNI ACTGG 1 cut(s) 687
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 7 cut(s) 254, 325, 343, 397, 1018, 1076, 1729
BsgI GTGCAG 1 cut(s) 1739
Bsh1236I CGCG 1 cut(s) 903
BshFI GGCC 4 cut(s) 297, 1244, 1483, 1597
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 211, 525, 1308
BsiHKCI CYCGRG 1 cut(s) 1722
BsiSI CCGG 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 4 cut(s) 297, 1244, 1483, 1597
Bso31I GGTCTC 1 cut(s) 1209
BsoBI CYCGRG 1 cut(s) 1722
Bsp1286I GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
Bsp143I GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
BspACI CCGC 3 cut(s) 960, 1384, 1448
BspANI GGCC 4 cut(s) 297, 1244, 1483, 1597
BspCNI CTCAG 6 cut(s) 265, 1060, 1120, 1503, 1614, 1627
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 1 cut(s) 903
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 3 cut(s) 553, 801, 1366
BspMAI CTGCAG 1 cut(s) 1747
BspPI GGATC 5 cut(s) 754, 794, 807, 1359, 1372
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 1209
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 687
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 441, 781, 1620
BssMI GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 781
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 3 cut(s) 505, 1023, 1553
Bst6I CTCTTC 4 cut(s) 216, 387, 732, 870
BstC8I GCNNGC 6 cut(s) 240, 336, 585, 1173, 1392, 1678
BstDEI CTNAG 9 cut(s) 273, 288, 593, 1068, 1107, 1235, 1490, 1601, 1614
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 5 cut(s) 97, 1123, 1462, 1540, 1630
BstFNI CGCG 1 cut(s) 903
BstHHI GCGC 1 cut(s) 1332
BstKTI GATC 6 cut(s) 235, 762, 802, 882, 910, 1367
BstMAI GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
BstMBI GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
BstMWI GCNNNNNNNGC 1 cut(s) 1091
BstNI CCWGG 1 cut(s) 888
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 886
BstSFI CTRYAG 3 cut(s) 246, 516, 1743
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 7 cut(s) 254, 325, 343, 397, 1018, 1076, 1729
BstV2I GAAGAC 2 cut(s) 1133, 1202
BstX2I RGATCY 2 cut(s) 799, 1364
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 2 cut(s) 799, 1364
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 4 cut(s) 297, 1244, 1483, 1597
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 5 cut(s) 97, 1123, 1462, 1540, 1630
BtsI GCAGTG 4 cut(s) 1051, 1140, 1484, 1751
BtsIMutI CAGTG 8 cut(s) 605, 806, 1019, 1051, 1140, 1440, 1484, 1751
Cac8I GCNNGC 6 cut(s) 240, 336, 585, 1173, 1392, 1678
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 1 cut(s) 415
CfoI GCGC 1 cut(s) 1332
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 3 cut(s) 680, 1481, 1595
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 1 cut(s) 1706
Csp6I GTAC 2 cut(s) 184, 1345
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviQI GTAC 2 cut(s) 184, 1345
DdeI CTNAG 9 cut(s) 273, 288, 593, 1068, 1107, 1235, 1490, 1601, 1614
DpnI GATC 6 cut(s) 234, 761, 801, 881, 909, 1366
DpnII GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
DraI TTTAAA 2 cut(s) 966, 1128
DraIII CACNNNGTG 1 cut(s) 1238
DriI GACNNNNNGTC 1 cut(s) 507
Eam1104I CTCTTC 4 cut(s) 216, 387, 732, 870
Eam1105I GACNNNNNGTC 1 cut(s) 507
EarI CTCTTC 4 cut(s) 216, 387, 732, 870
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 781
Eco24I GRGCYC 2 cut(s) 166, 525
Eco31I GGTCTC 1 cut(s) 1209
Eco47I GGWCC 1 cut(s) 680
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 3 cut(s) 1196, 1239, 1751
Eco88I CYCGRG 1 cut(s) 1722
EcoICRI GAGCTC 1 cut(s) 523
EcoRI GAATTC 4 cut(s) 38, 55, 630, 916
EcoRII CCWGG 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 781
EcoT38I GRGCYC 2 cut(s) 166, 525
ErhI CCWWGG 1 cut(s) 781
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 1573, 1605
FauNDI CATATG 1 cut(s) 715
Fnu4HI GCNGC 9 cut(s) 243, 332, 339, 411, 960, 1032, 1065, 1449, 1743
FokI GGATG 5 cut(s) 104, 1130, 1469, 1547, 1637
FriOI GRGCYC 2 cut(s) 166, 525
Fsp4HI GCNGC 9 cut(s) 243, 332, 339, 411, 960, 1032, 1065, 1449, 1743
FspBI CTAG 4 cut(s) 303, 671, 923, 1397
GlaI GCGC 1 cut(s) 1331
GluI GCNGC 9 cut(s) 243, 332, 339, 411, 960, 1032, 1065, 1449, 1743
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 4 cut(s) 297, 1244, 1483, 1597
HapII CCGG 1 cut(s) 298
HgaI GACGC 1 cut(s) 1706
HhaI GCGC 1 cut(s) 1332
Hin6I GCGC 1 cut(s) 1330
HinP1I GCGC 1 cut(s) 1330
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 6 cut(s) 5, 116, 311, 604, 1052, 1312
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 668, 683
Hpy188I TCNGA 7 cut(s) 636, 1192, 1219, 1270, 1426, 1604, 1617
Hpy188III TCNNGA 9 cut(s) 107, 200, 303, 353, 416, 530, 560, 608, 734
Hpy8I GTNNAC 2 cut(s) 668, 683
HpyCH4III ACNGT 3 cut(s) 505, 1023, 1553
HpyCH4IV ACGT 1 cut(s) 1347
HpyF10VI GCNNNNNNNGC 1 cut(s) 1091
HpyF3I CTNAG 9 cut(s) 273, 288, 593, 1068, 1107, 1235, 1490, 1601, 1614
HpySE526I ACGT 1 cut(s) 1347
HspAI GCGC 1 cut(s) 1330
Kzo9I GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 528, 941, 1474
Lsp1109I GCAGC 7 cut(s) 254, 325, 343, 397, 1018, 1076, 1729
LweI GCATC 6 cut(s) 237, 346, 427, 463, 1435, 1525
MaeI CTAG 4 cut(s) 303, 671, 923, 1397
MaeII ACGT 1 cut(s) 1347
MaeIII GTNAC 2 cut(s) 1438, 1553
MalI GATC 6 cut(s) 234, 761, 801, 881, 909, 1366
MboI GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
MboII GAAGA 9 cut(s) 111, 203, 374, 749, 887, 1133, 1176, 1202, 1270
MfeI CAATTG 1 cut(s) 1539
MflI RGATCY 2 cut(s) 799, 1364
MhlI GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
MluI ACGCGT 1 cut(s) 901
MmeI TCCRAC 2 cut(s) 893, 1057
MseI TTAA 8 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608
MslI CAYNNNNRTG 1 cut(s) 993
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 888
MunI CAATTG 1 cut(s) 1539
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 888
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 1 cut(s) 1091
NdeI CATATG 1 cut(s) 715
NdeII GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
NlaIV GGNNCC 3 cut(s) 553, 801, 1366
NmuCI GTSAC 1 cut(s) 1438
NspI RCATGY 1 cut(s) 338
PaeI GCATGC 1 cut(s) 338
PagI TCATGA 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 907
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 6 cut(s) 5, 116, 311, 604, 1052, 1312
PkrI GCNGC 9 cut(s) 244, 333, 340, 412, 961, 1033, 1066, 1450, 1744
Psp124BI GAGCTC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 886
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 3 cut(s) 553, 801, 1366
PspPI GGNCC 3 cut(s) 680, 1481, 1595
PstI CTGCAG 1 cut(s) 1747
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 799, 1364
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 2 cut(s) 185, 1346
RsaNI GTAC 2 cut(s) 184, 1345
RseI CAYNNNNRTG 1 cut(s) 993
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 8 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608
SatI GCNGC 9 cut(s) 243, 332, 339, 411, 960, 1032, 1065, 1449, 1743
Sau3AI GATC 6 cut(s) 232, 759, 799, 879, 907, 1364
Sau96I GGNCC 3 cut(s) 680, 1481, 1595
ScrFI CCNGG 1 cut(s) 888
SduI GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
SfaNI GCATC 6 cut(s) 237, 346, 427, 463, 1435, 1525
SfcI CTRYAG 3 cut(s) 246, 516, 1743
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 993
SphI GCATGC 1 cut(s) 338
SsiI CCGC 3 cut(s) 960, 1384, 1448
SspI AATATT 2 cut(s) 103, 453
SspMI CTAG 4 cut(s) 303, 671, 923, 1397
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 886
StyI CCWWGG 1 cut(s) 781
TaaI ACNGT 3 cut(s) 505, 1023, 1553
TaiI ACGT 1 cut(s) 1350
TaqI TCGA 2 cut(s) 231, 511
TaqII GACCGA 1 cut(s) 1634
TauI GCSGC 2 cut(s) 962, 1451
TfiI GAWTC 6 cut(s) 5, 116, 311, 604, 1052, 1312
Tru1I TTAA 8 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608
Tru9I TTAA 8 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608
TscAI CASTG 8 cut(s) 605, 813, 1026, 1051, 1140, 1447, 1491, 1758
TseFI GTSAC 1 cut(s) 1438
TseI GCWGC 7 cut(s) 242, 331, 338, 410, 1031, 1064, 1742
Tsp45I GTSAC 1 cut(s) 1438
TspGWI ACGGA 1 cut(s) 1357
TspRI CASTG 8 cut(s) 605, 813, 1026, 1051, 1140, 1447, 1491, 1758
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 8 cut(s) 38, 55, 630, 772, 916, 1038, 1179, 1640
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 1 cut(s) 338
XspI CTAG 4 cut(s) 303, 671, 923, 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.