Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006321

Physical Location & Seq

Genomic Coordinates Forward (+)

10303219 .. 10305098

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAACATCTAACATTTGCTTTATCCTTATGCAACCAAACTTTTGTTTTAGCAAAGCGACTTGAAGAAATCATGCCTGGAGTATATCACCGTGTTGATCATTGGAATTCTTTAGCCCTTTGTTATAGTGGAGCAGGACAGAACGAAGAGGCGTTGAACCTATTAAGGAAGTCTTTGCACAAACATGAACGGCCAGATGAACTCATGGCATTGTTATTAGCCGCCAAAATCTGCAGTGAGGATTCCCATGTTGCAGCTGAGGGAGTGGGATATGCACAAAGGGCTATTAGCAATGCTCAGGGATTGGATGAACATTTAAGGGGTGTGGGACTTCGCTTGTTGGGTCTTTCTTTGGGGAAGCAAGCTAAAGTTTCTTCTTCTGACTTTGAGAGGTCTCGTCTTCAGTCTGAAGCACTGAAATCACTAAATGAGGCGATTACTTTGGAGCCGAACAATTCAGATTTGGCCTTCGAGTTGGGAGTTCACTACGCAGAGCACCGGAATCTGAATACTGCTTTGCGCTATGCAAAACAGTTCATTGATCAAACAGGGGGCTCCCTGATAAAGGGTTGGAGGTTGCTTGCTCTTCTTTTGTCTGCTCAACAGCGATTTTCAGAAGCTCATGTGGTCACTGATGCTGCTTTGGATGAGACCACAAAATGGGAACAAGGGCCACTTCTCAGGCTTAAAGCAAAGCTAAAAATTTCCCAATCATTACCCATGGATGCAATTGAAACTTATCGTAACCTTCTTGCTTTGGTTCAAGCCCAAAGGAAATCTTTTGGACCTCTCAGAATGAGTCCTCAGGCTGAGGATGATAAAGTTTGTGAATTTGAAGTTTGGCATGGATTGTCAGACTTGTACTCTAGCCTTTCGTATTGGAAGGATGCAGAAATATGTTTGAGTAAAGCCAGAGAGCTGAAGCAGCACTCTGCAGAAACACTGCACATAGAAGGTGTCATCTTTGAAGGACAGGGGCAAATTCAAGAAGCTCTAGCCACTTATATCGATGGTCTTCTGGTGGAACCCTGTTATGTTCCTTGCAAGATTTTGATTGCCGCTCTTTTGTCAAAGATGGGATCAACGGCATTGCCTGTGGCAAGGAGCTTACTCTCGGATGCATTAAGGATTGATCCTAGCAATCGAAAGGCTTGGTATTACTTGGGAATGATTCACAGAGATGATGGACGAATAGGGGATGCCATAGACTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCGGATCCAGTTGAAGGCTTCGGCTCTGTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_7 TPR_8

Protein Analysis

425

Amino Acids

47.09

Weight (kDa)

5.73

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43040 AT2G43040
fragaria_vesca	FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960
malus_domestica	MD09G1145800.v1.1 MD17G1132300.v1.1
prunus_persica	Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1
pyrus_communis	pycom09g06610 pycom17g12580 pycom17g12590
rosa_chinensis	RchiOBHm_Chr2g0152551
rosa_laevigata	RLG00000020645
rosa_multiflora	Rmu_co8464321.1_g000001 Rmu_sc0014904.1_g000001 Rmu_sc0027677.1_g000002
rosa_roxburghii	Rroxscaffold_2G00095610
rosa_rugosa	Rorug02G0434500
rosa_samantha	Rh2AG495700 Rh2BG507500 Rh2CG481900 Rh2DG518800
rosa_wichuraiana	Rw2G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccBSI	CCGCTC	1 cut(s)	1061
AciI	CCGC	2 cut(s)	222, 1059
AclWI	GGATC	4 cut(s)	1087, 1127, 1238, 1251
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	4 cut(s)	106, 702, 830, 981
AcuI	CTGAAG	3 cut(s)	386, 429, 941
AfaI	GTAC	1 cut(s)	863
AfiI	CCNNNNNNNGG	3 cut(s)	565, 660, 1253
AgsI	TTSAA	9 cut(s)	65, 157, 734, 764, 836, 968, 986, 1235, 1253
AjnI	CCWGG	2 cut(s)	76, 1215
AluBI	AGCT	8 cut(s)	257, 365, 620, 697, 919, 992, 1107, 1223
AluI	AGCT	8 cut(s)	257, 365, 620, 697, 919, 992, 1107, 1223
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	2 cut(s)	399, 644
AlwI	GGATC	4 cut(s)	1087, 1127, 1238, 1251
AoxI	GGCC	3 cut(s)	191, 465, 671
ApeKI	GCWGC	4 cut(s)	254, 638, 925, 1220
ApoI	RAATTY	4 cut(s)	106, 702, 830, 981
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	671, 785
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	785
AxyI	CCTNAGG	1 cut(s)	804
BamHI	GGATCC	1 cut(s)	1243
BanII	GRGCYC	1 cut(s)	557
BbsI	GAAGAC	2 cut(s)	392, 1007
Bbv12I	GWGCWC	1 cut(s)	498
BbvCI	CCTCAGC	2 cut(s)	258, 810
BbvI	GCAGC	4 cut(s)	266, 625, 937, 1232
BccI	CCATC	3 cut(s)	1004, 1069, 1178
BceAI	ACGGC	2 cut(s)	206, 1101
BciT130I	CCWGG	2 cut(s)	78, 1217
BclI	TGATCA	2 cut(s)	97, 541
BcoDI	GTCTC	2 cut(s)	399, 644
BfaI	CTAG	3 cut(s)	867, 995, 1137
BfmI	CTRYAG	2 cut(s)	232, 933
BisI	GCNGC	6 cut(s)	222, 255, 639, 926, 1059, 1221
BlsI	GCNGC	6 cut(s)	223, 256, 640, 927, 1060, 1222
Bme1390I	CCNGG	2 cut(s)	78, 1217
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	2 cut(s)	671, 785
BmiI	GGNNCC	4 cut(s)	447, 556, 1026, 1245
BmrFI	CCNGG	2 cut(s)	78, 1217
BmsI	GCATC	5 cut(s)	625, 715, 877, 1108, 1189
BpiI	GAAGAC	2 cut(s)	392, 1007
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	3 cut(s)	258, 297, 810
Bsa29I	ATCGAT	1 cut(s)	1008
BsaI	GGTCTC	2 cut(s)	399, 644
BsaJI	CCNNGG	1 cut(s)	720
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	3 cut(s)	565, 660, 1253
Bse1I	ACTGG	1 cut(s)	1247
Bse21I	CCTNAGG	1 cut(s)	804
Bse3DI	GCAATG	2 cut(s)	298, 1088
BseBI	CCWGG	2 cut(s)	78, 1217
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	7 cut(s)	313, 652, 730, 820, 892, 1123, 1204
BseLI	CCNNNNNNNGG	3 cut(s)	565, 660, 1253
BseMI	GCAATG	2 cut(s)	298, 1088
BseMII	CTCAG	6 cut(s)	249, 311, 694, 801, 805, 818
BseNI	ACTGG	1 cut(s)	1247
BseXI	GCAGC	4 cut(s)	266, 625, 937, 1232
BsgI	GTGCAG	1 cut(s)	929
BshFI	GGCC	3 cut(s)	193, 467, 673
BshVI	ATCGAT	1 cut(s)	1008
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	499
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	3 cut(s)	565, 660, 1253
BsmAI	GTCTC	2 cut(s)	399, 644
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	3 cut(s)	193, 467, 673
Bso31I	GGTCTC	2 cut(s)	399, 644
Bsp1286I	GDGCHC	2 cut(s)	498, 557
Bsp143I	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	2 cut(s)	222, 1059
BspANI	GGCC	3 cut(s)	193, 467, 673
BspCNI	CTCAG	6 cut(s)	250, 310, 693, 802, 804, 817
BspDI	ATCGAT	1 cut(s)	1008
BspLI	GGNNCC	4 cut(s)	447, 556, 1026, 1245
BspMAI	CTGCAG	2 cut(s)	236, 937
BspPI	GGATC	4 cut(s)	1087, 1127, 1238, 1251
BspQI	GCTCTTC	1 cut(s)	591
BspTNI	GGTCTC	2 cut(s)	399, 644
BsrBI	CCGCTC	1 cut(s)	1061
BsrDI	GCAATG	2 cut(s)	298, 1088
BsrI	ACTGG	1 cut(s)	1247
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	78, 1217
Bst4CI	ACNGT	2 cut(s)	92, 534
Bst6I	CTCTTC	2 cut(s)	141, 591
BstC8I	GCNNGC	2 cut(s)	363, 582
BstDEI	CTNAG	6 cut(s)	258, 297, 680, 791, 804, 810
BstDSI	CCRYGG	1 cut(s)	720
BstENI	CCTNNNNNAGG	1 cut(s)	563
BstF5I	GGATG	7 cut(s)	313, 652, 730, 820, 892, 1123, 1204
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	5 cut(s)	100, 544, 1082, 1135, 1246
BstMAI	GTCTC	2 cut(s)	399, 644
BstMBI	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 925
BstNI	CCWGG	2 cut(s)	78, 1217
BstSCI	CCNGG	2 cut(s)	76, 1215
BstSFI	CTRYAG	2 cut(s)	232, 933
BstV1I	GCAGC	4 cut(s)	266, 625, 937, 1232
BstV2I	GAAGAC	2 cut(s)	392, 1007
BstX2I	RGATCY	1 cut(s)	1243
BstYI	RGATCY	1 cut(s)	1243
Bsu15I	ATCGAT	1 cut(s)	1008
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	193, 467, 673
BsuTUI	ATCGAT	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	720
BtsCI	GGATG	7 cut(s)	313, 652, 730, 820, 892, 1123, 1204
BtsI	GCAGTG	2 cut(s)	241, 941
BtsIMutI	CAGTG	4 cut(s)	241, 413, 630, 941
Cac8I	GCNNGC	2 cut(s)	363, 582
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	671, 785
ClaI	ATCGAT	1 cut(s)	1008
Csp6I	GTAC	1 cut(s)	862
CviAII	CATG	8 cut(s)	73, 185, 205, 248, 623, 721, 845, 1228
CviQI	GTAC	1 cut(s)	862
DdeI	CTNAG	6 cut(s)	258, 297, 680, 791, 804, 810
DpnI	GATC	5 cut(s)	99, 543, 1081, 1134, 1245
DpnII	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	141, 591
EarI	CTCTTC	2 cut(s)	141, 591
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	557
Eco31I	GGTCTC	2 cut(s)	399, 644
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	3 cut(s)	386, 429, 941
Eco81I	CCTNAGG	1 cut(s)	804
EcoNI	CCTNNNNNAGG	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	76, 1215
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	1123
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	8 cut(s)	76, 188, 208, 251, 626, 724, 848, 1231
FalI	AAGNNNNNCTT	6 cut(s)	157, 189, 660, 692, 763, 795
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	8 cut(s)	72, 184, 204, 247, 622, 720, 844, 1227
FbaI	TGATCA	2 cut(s)	97, 541
Fnu4HI	GCNGC	6 cut(s)	222, 255, 639, 926, 1059, 1221
FokI	GGATG	7 cut(s)	320, 659, 737, 827, 899, 1130, 1211
FriOI	GRGCYC	1 cut(s)	557
Fsp4HI	GCNGC	6 cut(s)	222, 255, 639, 926, 1059, 1221
FspBI	CTAG	3 cut(s)	867, 995, 1137
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	6 cut(s)	222, 255, 639, 926, 1059, 1221
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	193, 467, 673
HapII	CCGG	1 cut(s)	499
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	8 cut(s)	76, 188, 208, 251, 626, 724, 848, 1231
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HinfI	GANTC	5 cut(s)	242, 502, 799, 1171, 1238
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188III	TCNNGA	1 cut(s)	986
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	6 cut(s)	478, 758, 877, 947, 962, 1247
HpyCH4III	ACNGT	2 cut(s)	92, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 925
HpyF3I	CTNAG	6 cut(s)	258, 297, 680, 791, 804, 810
Hsp92II	CATG	8 cut(s)	76, 188, 208, 251, 626, 724, 848, 1231
HspAI	GCGC	1 cut(s)	520
Ksp22I	TGATCA	2 cut(s)	97, 541
Kzo9I	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	4 cut(s)	131, 445, 560, 1104
Lsp1109I	GCAGC	4 cut(s)	266, 625, 937, 1232
LweI	GCATC	5 cut(s)	625, 715, 877, 1108, 1189
MaeI	CTAG	3 cut(s)	867, 995, 1137
MaeIII	GTNAC	2 cut(s)	628, 743
MalI	GATC	5 cut(s)	99, 543, 1081, 1134, 1245
MbiI	CCGCTC	1 cut(s)	1061
MboI	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
MboII	GAAGA	8 cut(s)	77, 158, 366, 369, 392, 578, 1007, 1247
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	1 cut(s)	1243
MhlI	GDGCHC	2 cut(s)	498, 557
MluCI	AATT	6 cut(s)	106, 454, 702, 729, 830, 981
MlyI	GAGTC	1 cut(s)	808
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	9 cut(s)	142, 232, 253, 384, 424, 567, 798, 805, 813
Mph1103I	ATGCAT	1 cut(s)	1123
MseI	TTAA	4 cut(s)	164, 317, 687, 1124
MslI	CAYNNNNRTG	2 cut(s)	183, 1179
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	2 cut(s)	78, 1217
MunI	CAATTG	1 cut(s)	729
MvaI	CCWGG	2 cut(s)	78, 1217
MwoI	GCNNNNNNNGC	2 cut(s)	281, 925
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
NlaIII	CATG	8 cut(s)	76, 188, 208, 251, 626, 724, 848, 1231
NlaIV	GGNNCC	4 cut(s)	447, 556, 1026, 1245
NmuCI	GTSAC	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	1123
PciSI	GCTCTTC	1 cut(s)	591
PfeI	GAWTC	4 cut(s)	242, 502, 1171, 1238
PflMI	CCANNNNNTGG	1 cut(s)	660
PkrI	GCNGC	6 cut(s)	223, 256, 640, 927, 1060, 1222
PleI	GAGTC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	807
Psp6I	CCWGG	2 cut(s)	76, 1215
PspGI	CCWGG	2 cut(s)	76, 1215
PspN4I	GGNNCC	4 cut(s)	447, 556, 1026, 1245
PspPI	GGNCC	2 cut(s)	671, 785
PstI	CTGCAG	2 cut(s)	236, 937
PsuI	RGATCY	1 cut(s)	1243
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	863
RsaNI	GTAC	1 cut(s)	862
RseI	CAYNNNNRTG	2 cut(s)	183, 1179
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	4 cut(s)	164, 317, 687, 1124
SatI	GCNGC	6 cut(s)	222, 255, 639, 926, 1059, 1221
Sau3AI	GATC	5 cut(s)	97, 541, 1079, 1132, 1243
Sau96I	GGNCC	2 cut(s)	671, 785
SchI	GAGTC	1 cut(s)	808
ScrFI	CCNGG	2 cut(s)	78, 1217
SduI	GDGCHC	2 cut(s)	498, 557
SfaNI	GCATC	5 cut(s)	625, 715, 877, 1108, 1189
SfcI	CTRYAG	2 cut(s)	232, 933
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	2 cut(s)	183, 1179
Sse9I	AATT	6 cut(s)	106, 454, 702, 729, 830, 981
SsiI	CCGC	2 cut(s)	222, 1059
SspMI	CTAG	3 cut(s)	867, 995, 1137
StyD4I	CCNGG	2 cut(s)	76, 1215
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	92, 534
TaqI	TCGA	3 cut(s)	471, 1008, 1144
TasI	AATT	6 cut(s)	106, 454, 702, 729, 830, 981
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	2 cut(s)	224, 1061
TfiI	GAWTC	4 cut(s)	242, 502, 1171, 1238
Tru1I	TTAA	4 cut(s)	164, 317, 687, 1124
Tru9I	TTAA	4 cut(s)	164, 317, 687, 1124
TscAI	CASTG	4 cut(s)	241, 420, 637, 948
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	4 cut(s)	254, 638, 925, 1220
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	4 cut(s)	201, 213, 324, 526
TspRI	CASTG	4 cut(s)	241, 420, 637, 948
Van91I	CCANNNNNTGG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	785
XagI	CCTNNNNNAGG	1 cut(s)	563
XapI	RAATTY	4 cut(s)	106, 702, 830, 981
XspI	CTAG	3 cut(s)	867, 995, 1137
Zsp2I	ATGCAT	1 cut(s)	1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.