FvH4_6g38960

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006321
Physical Location & Seq
Reverse (-)
30809472 .. 30815126
5655 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38960.t3

Sequence Viewer

Length: 2109 bp
ATGGAATCTGGCGAGTATGAGGAAGGCATGGTGGTTGAATTCTCTGCTAATGGGAATTCAATGAAAGCAACTGATGTCGCAGCCAAGCTGGATGAAGGAAATATTCAGGAGGCAGAATCTTCATTACGAGAAGGGTTATCACTCAATTTTGAGGAAGCAAGAGCCCTCCTTGGAAAGTTAGAGTACCAAAGAGGTAATCTTGAAGGTGCTCTTCGTGTGTTTGATGGCATCGATCTCCAAGCGGCCATAGAGCGATTGCAACCTTCTATTGCTGAGAAAACACCTTCTAAAAAAGGCAGGTCTCGTCCTGATTCACAGCATTCAGTCTCGCAGCATGCTGCTACCCTCGTTCTTGACGCCATATACTTGAAAGCCAAGTCTCTTCATAAGCTTGGCAGATTAACAGAGGCTGCTCATGAATGTAAAAGAGTGCTTGATGCCGTGGAAAAAATATTCCATCAAGGAATACCTGATGCACAAGTGGATAGTAGATTGCAGGAGACAGTCAGCCGAGCTGTAGAGCTCCTTCCAGAGCTGTGGAAACAAGCCGGTTCCTATCAAGAAACAATCACTGCTTATAGACGTGCTCTACTTGGTCAGTGGAACCTGGATAATGACTGTTGTGCAAGAATTCAGAAAGCATTTGCTGTGTTTCTGCTGTATAGTGGACTAGAGGCTGGTCCACCCAGCTTAGGTGTTCAGGTTGAAGGTTCATATGTGCCTAAAAATAATCTGGAAGAGGCAATCCTGCTTTTAATGATCCTTTTGAGAAATTTGTCCGAAGGTAAATTGAAATGGGATCCATCACTGATAGAACATCTAACATTCGCACTATCTATATGCAACCAGACTTCTGTATTAGCCAAGCAAATTGAAGAGATCATGCCTGGAGTATATCCGCGTGTTGATCGTTGGAATTCTCTAGCTTTGTGTTATAGTGGAGCAGGACAGAACAAAGCCGCTTTAAATCTGTTGAGGAAATCTTTACATAAACATGAACGACCAGATGAACTCATGCCACTATTATTGGCTGCCAAAATTTGCAGTGAGGATTCCCATGTGGCAGCTGAGGGAGTTGGATATGCACAGAGGGCTGTTAGTAATTCTCAGGGTAAGGATGAACATTTAAAGGCTGTGGCTCTTCGCTTTTTGGGTCTTTGTTTGGGGAAGCAAGCAACAACTTCTTCCTCTGACTTTGAGAGGTCTCGTATTCAGTCTGAAGCACTAAAGTCACTAAGTGAGGCCATTTCTTTGGAGAAGAACAATTCAGATTTAATTTTTGAGTTGGGGGTTCAATATGCAGAGCACAGGAATCTAAATGCTGCTTTGCGCTATGCAAAGCAGTTCATTGATGAAACAGGGGGTTCCGCATTAAAAGGTTGGCGATTGCTTGCTCTAGTTTTATCTGCTCAACAGCGATTTTCAGAGGCTCATGTAGTCACTGATGCGGCATTGGATGAGACTGCAAAATGGGAGCAAGGGCCACTACTGAGACTTAAAGCAAAGTTGAAAATCTCCCAATCCTTACCAATGGATGCAATTGAAACTTACCGTAACCTTCTTGCTTTGGTTCAAGCCCAAAGGAAATCTTTTGGGCCTCTCAGAGTTAATTCTCAGACCGAGGATGATAAAGTCAACGAACTTGAAGTTTGGCATGGTTTGTCAAACTTATATGCCAGCCTTTCATATTGGAGGGATGCAGAAATATGTTTGGGTAAAGCCAGAGAGTTGAAGCAGTTTGCTGCAGAAACACTGCACGCAGAAGGCAAGAACTTCACTCATCTAACATGCATTATCTTGGAAGGATGTGGGAGAAGTCATGAAGCTCTAGTCACTTATATTAATGCTCTTATGCAAGAACCCTATTATGTTCCTGGCAAAATTGGGGTTGCCGTGCTTATGTCAAAGATGGGACCTAAGGCATTGCCTGTGGCAAGAAGTTTACTCTCAGATGCACTCAGGCTCAACCCTAACAATCGTAAAGCTTGGTATCACTTGGGAATCATTCACAGAGATGATGGACGGATGGCTGATGCAGCAGACTGCTTTCAGGCAGCTACCATGCTTGAAGAATCTGATCCTATCGAAAGCTTCAGCTCTATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005516
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_7 TPR_8

Protein Analysis

703

Amino Acids

77.73

Weight (kDa)

6.04

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 636 - 678 1.3e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccII CGCG 1 cut(s) 901
AciI CCGC 5 cut(s) 242, 899, 960, 1368, 1448
AclWI GGATC 4 cut(s) 754, 794, 807, 2072
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 6 cut(s) 38, 55, 630, 772, 916, 1038
AcuI CTGAAG 2 cut(s) 1239, 2077
AcyI GRCGYC 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 1238
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 692
AjiI CACGTC 1 cut(s) 584
AjnI CCWGG 3 cut(s) 606, 886, 1873
Alw21I GWGCWC 4 cut(s) 211, 525, 589, 1308
Alw26I GTCTC 7 cut(s) 306, 331, 384, 494, 1209, 1454, 1486
AlwI GGATC 4 cut(s) 754, 794, 807, 2072
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 4 cut(s) 243, 1242, 1481, 1595
ApoI RAATTY 6 cut(s) 38, 55, 630, 772, 916, 1038
AseI ATTAAT 1 cut(s) 1842
AspLEI GCGC 1 cut(s) 1332
AspS9I GGNCC 4 cut(s) 680, 1481, 1595, 1913
AvaII GGWCC 2 cut(s) 680, 1913
AxyI CCTNAGG 1 cut(s) 1917
BamHI GGATCC 1 cut(s) 799
BanII GRGCYC 2 cut(s) 166, 525
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
Bbv12I GWGCWC 4 cut(s) 211, 525, 589, 1308
BbvCI CCTCAGC 1 cut(s) 1068
BccI CCATC 6 cut(s) 218, 465, 811, 1903, 2012, 2020
BceAI ACGGC 2 cut(s) 425, 1877
BciT130I CCWGG 3 cut(s) 608, 888, 1875
BcoDI GTCTC 7 cut(s) 306, 331, 384, 494, 1209, 1454, 1486
BfaI CTAG 4 cut(s) 671, 923, 1397, 1829
BfmI CTRYAG 2 cut(s) 516, 1743
BfuAI ACCTGC 1 cut(s) 288
Bme1390I CCNGG 3 cut(s) 608, 888, 1875
Bme18I GGWCC 2 cut(s) 680, 1913
BmgBI CACGTC 1 cut(s) 584
BmgT120I GGNCC 4 cut(s) 680, 1481, 1595, 1913
BmiI GGNNCC 5 cut(s) 553, 605, 801, 1366, 1914
BmrFI CCNGG 3 cut(s) 608, 888, 1875
BmsI GCATC 8 cut(s) 237, 427, 463, 1435, 1525, 1687, 1942, 2023
BpmI CTGGAG 1 cut(s) 909
Bpu10I CCTNAGC 2 cut(s) 691, 1068
Bsa29I ATCGAT 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 2 cut(s) 306, 1209
BsaJI CCNNGG 3 cut(s) 169, 441, 1620
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse118I RCCGGY 1 cut(s) 548
Bse21I CCTNAGG 1 cut(s) 1917
Bse3DI GCAATG 1 cut(s) 1922
BseBI CCWGG 3 cut(s) 608, 888, 1875
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 169, 441, 1620
BseGI GGATG 8 cut(s) 97, 1123, 1462, 1540, 1630, 1702, 1811, 2031
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMI GCAATG 1 cut(s) 1922
BseMII CTCAG 8 cut(s) 264, 1059, 1121, 1481, 1615, 1628, 1962, 1972
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 1739
Bsh1236I CGCG 1 cut(s) 901
BshFI GGCC 4 cut(s) 245, 1244, 1483, 1597
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 4 cut(s) 211, 525, 589, 1308
BsiSI CCGG 1 cut(s) 549
BslFI GGGAC 1 cut(s) 1926
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 7 cut(s) 306, 331, 384, 494, 1209, 1454, 1486
BsmFI GGGAC 1 cut(s) 1926
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 4 cut(s) 245, 1244, 1483, 1597
Bso31I GGTCTC 2 cut(s) 306, 1209
Bsp1286I GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
Bsp143I GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
BspACI CCGC 5 cut(s) 242, 899, 960, 1368, 1448
BspANI GGCC 4 cut(s) 245, 1244, 1483, 1597
BspCNI CTCAG 8 cut(s) 265, 1060, 1120, 1482, 1614, 1627, 1961, 1971
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 1 cut(s) 901
BspHI TCATGA 2 cut(s) 415, 1819
BspLI GGNNCC 5 cut(s) 553, 605, 801, 1366, 1914
BspMAI CTGCAG 1 cut(s) 1747
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 4 cut(s) 754, 794, 807, 2072
BspQI GCTCTTC 2 cut(s) 216, 1146
BspTNI GGTCTC 2 cut(s) 306, 1209
BsrDI GCAATG 1 cut(s) 1922
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 3 cut(s) 169, 441, 1620
BssMI GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 3 cut(s) 608, 888, 1875
Bst4CI ACNGT 3 cut(s) 505, 620, 1553
Bst6I CTCTTC 5 cut(s) 216, 387, 732, 870, 1146
BstACI GRCGYC 1 cut(s) 357
BstC8I GCNNGC 5 cut(s) 336, 1173, 1392, 1678, 1758
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 8 cut(s) 97, 1123, 1462, 1540, 1630, 1702, 1811, 2031
BstFNI CGCG 1 cut(s) 901
BstHHI GCGC 1 cut(s) 1332
BstKTI GATC 6 cut(s) 235, 762, 802, 882, 910, 2080
BstMAI GTCTC 7 cut(s) 306, 331, 384, 494, 1209, 1454, 1486
BstMBI GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
BstMWI GCNNNNNNNGC 2 cut(s) 1091, 2036
BstNI CCWGG 3 cut(s) 608, 888, 1875
BstNSI RCATGY 2 cut(s) 338, 1791
BstSCI CCNGG 3 cut(s) 606, 886, 1873
BstSFI CTRYAG 2 cut(s) 516, 1743
BstUI CGCG 1 cut(s) 901
BstX2I RGATCY 1 cut(s) 799
BstXI CCANNNNNNTGG 2 cut(s) 537, 1252
BstYI RGATCY 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 1917
BsuRI GGCC 4 cut(s) 245, 1244, 1483, 1597
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 8 cut(s) 97, 1123, 1462, 1540, 1630, 1702, 1811, 2031
BtsI GCAGTG 3 cut(s) 570, 1051, 1751
BtsIMutI CAGTG 6 cut(s) 570, 605, 806, 1051, 1440, 1751
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 5 cut(s) 336, 1173, 1392, 1678, 1758
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 2 cut(s) 415, 1819
CfoI GCGC 1 cut(s) 1332
Cfr10I RCCGGY 1 cut(s) 548
Cfr13I GGNCC 4 cut(s) 680, 1481, 1595, 1913
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviQI GTAC 1 cut(s) 184
DpnI GATC 6 cut(s) 234, 761, 801, 881, 909, 2079
DpnII GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
DraI TTTAAA 2 cut(s) 966, 1128
DraIII CACNNNGTG 1 cut(s) 1238
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 5 cut(s) 216, 387, 732, 870, 1146
EarI CTCTTC 5 cut(s) 216, 387, 732, 870, 1146
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 166, 525
Eco31I GGTCTC 2 cut(s) 306, 1209
Eco47I GGWCC 2 cut(s) 680, 1913
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 2 cut(s) 1239, 2077
Eco81I CCTNAGG 1 cut(s) 1917
EcoICRI GAGCTC 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 1913
EcoRI GAATTC 4 cut(s) 38, 55, 630, 916
EcoRII CCWGG 3 cut(s) 606, 886, 1873
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 1793
EcoT38I GRGCYC 2 cut(s) 166, 525
ErhI CCWWGG 1 cut(s) 169
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 1573, 1605
FaqI GGGAC 1 cut(s) 1926
FauNDI CATATG 1 cut(s) 715
FokI GGATG 8 cut(s) 104, 1130, 1469, 1547, 1637, 1709, 1818, 2038
FriOI GRGCYC 2 cut(s) 166, 525
FspBI CTAG 4 cut(s) 671, 923, 1397, 1829
GlaI GCGC 1 cut(s) 1331
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 4 cut(s) 245, 1244, 1483, 1597
HapII CCGG 1 cut(s) 549
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 1332
Hin1I GRCGYC 1 cut(s) 357
Hin6I GCGC 1 cut(s) 1330
HinP1I GCGC 1 cut(s) 1330
HincII GTYRAC 1 cut(s) 1636
HindII GTYRAC 1 cut(s) 1636
HindIII AAGCTT 3 cut(s) 389, 1983, 2089
HinfI GANTC 7 cut(s) 5, 116, 311, 1052, 1312, 2001, 2072
HpaII CCGG 1 cut(s) 549
Hpy166II GTNNAC 4 cut(s) 668, 683, 1636, 1943
Hpy188III TCNNGA 9 cut(s) 107, 200, 308, 353, 416, 530, 560, 734, 1820
Hpy8I GTNNAC 4 cut(s) 668, 683, 1636, 1943
HpyCH4III ACNGT 3 cut(s) 505, 620, 1553
HpyCH4IV ACGT 1 cut(s) 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 1091, 2036
HpySE526I ACGT 1 cut(s) 583
Hsp92I GRCGYC 1 cut(s) 357
HspAI GCGC 1 cut(s) 1330
Kzo9I GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
LguI GCTCTTC 2 cut(s) 216, 1146
LmnI GCTCC 3 cut(s) 528, 941, 1474
LweI GCATC 8 cut(s) 237, 427, 463, 1435, 1525, 1687, 1942, 2023
MaeI CTAG 4 cut(s) 671, 923, 1397, 1829
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 4 cut(s) 1230, 1438, 1553, 1831
MalI GATC 6 cut(s) 234, 761, 801, 881, 909, 2079
MboI GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
MboII GAAGA 9 cut(s) 111, 203, 374, 749, 887, 1133, 1176, 1270, 2081
MfeI CAATTG 1 cut(s) 1539
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
MmeI TCCRAC 2 cut(s) 893, 1057
Mph1103I ATGCAT 1 cut(s) 1793
MseI TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1842
MslI CAYNNNNRTG 2 cut(s) 993, 2013
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 3 cut(s) 608, 888, 1875
MunI CAATTG 1 cut(s) 1539
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 3 cut(s) 608, 888, 1875
MvnI CGCG 1 cut(s) 901
MwoI GCNNNNNNNGC 2 cut(s) 1091, 2036
NdeI CATATG 1 cut(s) 715
NdeII GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
NlaIV GGNNCC 5 cut(s) 553, 605, 801, 1366, 1914
NmeAIII GCCGAG 1 cut(s) 536
NmuCI GTSAC 3 cut(s) 1230, 1438, 1831
NsiI ATGCAT 1 cut(s) 1793
NspI RCATGY 2 cut(s) 338, 1791
PaeI GCATGC 1 cut(s) 338
PagI TCATGA 2 cut(s) 415, 1819
PciSI GCTCTTC 2 cut(s) 216, 1146
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 7 cut(s) 5, 116, 311, 1052, 1312, 2001, 2072
PpuMI RGGWCCY 1 cut(s) 1913
PshBI ATTAAT 1 cut(s) 1842
Psp124BI GAGCTC 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 1913
Psp6I CCWGG 3 cut(s) 606, 886, 1873
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 3 cut(s) 606, 886, 1873
PspN4I GGNNCC 5 cut(s) 553, 605, 801, 1366, 1914
PspPI GGNCC 4 cut(s) 680, 1481, 1595, 1913
PspPPI RGGWCCY 1 cut(s) 1913
PstI CTGCAG 1 cut(s) 1747
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 799
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 993, 2013
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 2 cut(s) 216, 1146
SaqAI TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1842
Sau3AI GATC 6 cut(s) 232, 759, 799, 879, 907, 2077
Sau96I GGNCC 4 cut(s) 680, 1481, 1595, 1913
ScrFI CCNGG 3 cut(s) 608, 888, 1875
SduI GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
SfaNI GCATC 8 cut(s) 237, 427, 463, 1435, 1525, 1687, 1942, 2023
SfcI CTRYAG 2 cut(s) 516, 1743
SinI GGWCC 2 cut(s) 680, 1913
SmiMI CAYNNNNRTG 2 cut(s) 993, 2013
SphI GCATGC 1 cut(s) 338
SsiI CCGC 5 cut(s) 242, 899, 960, 1368, 1448
SspI AATATT 2 cut(s) 103, 453
SspMI CTAG 4 cut(s) 671, 923, 1397, 1829
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 3 cut(s) 606, 886, 1873
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 505, 620, 1553
TaiI ACGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 231, 2085
TaqII GACCGA 1 cut(s) 1634
TauI GCSGC 3 cut(s) 245, 962, 1451
TfiI GAWTC 7 cut(s) 5, 116, 311, 1052, 1312, 2001, 2072
Tru1I TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1842
Tru9I TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1842
TscAI CASTG 6 cut(s) 577, 605, 813, 1051, 1447, 1758
TseFI GTSAC 3 cut(s) 1230, 1438, 1831
Tsp45I GTSAC 3 cut(s) 1230, 1438, 1831
TspGWI ACGGA 1 cut(s) 2038
TspRI CASTG 6 cut(s) 577, 605, 813, 1051, 1447, 1758
VpaK11BI GGWCC 2 cut(s) 680, 1913
VspI ATTAAT 1 cut(s) 1842
XapI RAATTY 6 cut(s) 38, 55, 630, 772, 916, 1038
XceI RCATGY 2 cut(s) 338, 1791
XspI CTAG 4 cut(s) 671, 923, 1397, 1829
Zsp2I ATGCAT 1 cut(s) 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.