Rh2AG495700

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006321
Physical Location & Seq
Reverse (-)
71696103 .. 71701536
5434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG495700.1

Sequence Viewer

Length: 2085 bp
ATGGATTCTGGCGAGTATGAGGAAGGCATGGTGGTTGAATTCTCTGCTAATGGGAATTCCATGAAATCAACTGATGTTGAAGCCAAGCTGGATGAAGGAAATATTCACGAGGCAGAATCTTCATTACGAGAGGGGTTATCACTCAATTTTGAGGAAGCAAGAGCCCTTCTTGGAAAGTTAGAGTACCAAAGAGGTAATCTTGAAGGTGCTCTTCGTGTGTTTGATGGCATCGATCTGCAAGCAGCTATAGAGCGATTGCAACCTTCTATTACTGAGAAAACACCTTCTAAGAAAGGCCGGTCTAGAGCTGATTCACAGCATTCAGTCTCGCAGCATGCTGCCACCCTTGTTCTTGATGCCATATACTTGAAAGCCAAGTCTCTTCATAAGCTTGGGAGATTAACAGAGGCTGCTCATGAATGTAAAAAAGTGCTTGATGCCGTGGAAAAAATATTCCATCAAGGAATACCTGATGCACAAGTGGATAGTAGATTGCAGGAGACAGTCAGTCGAGCTGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTCCTATCAAGAAACAATCTCTGCTTATAGGCGTGCCCTACTTAGTCAGTGGAATCTGGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTGTGTTTCTGCTATATAGTGGACTAGAGGCTGGTCCACCCAGTTTAGGTGTTCAGGTTGAAGGTTCATATGTGCCTAAAAATAATCTGGAAGAGGCAATCCTGCTTTTAATGATCCTTTTGAGAAATTTGTTCCAAGGTAAAACAAAATGGGATCCATCACTGACAGAACATCTAACATTTGCACTATCTATATGCAACCAGACTTGTGTATTAGCAAAGCAACTTGAAGAGATCATGCCTGGAGTATATCCACGCGTTGATCGTTGGAATTCTCTAGCTCTGTGTTATAGTGGAGCAGGACAGAACAAAGCCGCTTTAAATCTGTTGAGGAAGTCTTTACACAAACATGAACGACCAGATGAACTCATGCCACTGTTATTGGCTGCCAAAATTTGCAGTGAGGATTCCCATGTTGCAGCTGAGGGAGTTGGATATGCACAGAGGGCTGTTAGTAATTCTCAGGGTAAGGATGAACATTTAAAGGCAGTGGGTCTTCGCTTGTTGGGTCTTTGTTTGGGGAAGCAAGCTAAAATTTCTTCCTCTGACTTTGAGAGGTCTCGTCTTCAGTCTGAAGCACTAAAATCACTAAGTGAGGCCGTTGCTTTGGAGAAGAACAATTCAGATTTAATTTTTGAGTTGGGGGTTCAATATGCAGAGCACAGGAATCTAAATACAGCTTTGCGCTATGCAAAGAAGTACGTTGATGAAACAGGGGGATCCGTATTAAAAGGTTGGCGGTTGCTTGCTCTAGTTTTATCTGCTCAACAGCGATTTTCAGAGGCTCATGTAGTCACTGATGCGGCTTTGGATGAGACTGCAAAATGGGAGCAAGGGCCACTGCTCAGGCTTAAAGCAAAGCTGAAAGTCTCCCAATCCTTACCGATGGATGCAATTGAAACTTACCGTTACCTTCTTGCTTTGGTTCAAGCACAAAGGAAATCTTTTGGGCCTCTCAGAGTTAATTCTCAGACCGAGGATGATAAAGTCAATGAATTTGAAGTTTGGCATGGTTTGTCAAACTTATATGCCAGCCTTTCATATTGGAAGGACGCAGAAATATGTTTGGGTAAAGCCCGAGAGCTGAAGCATTACGCTGCAGAAACACTGCACACAGAAGGCATTATCTTGGAAGGATGTGGGAAAAGTCATGATGCTCTAGCCACTTATATTGATGCTCTTATGCTAGAACCCTATTTTGTTCCTGGCAAGATTGTGGTTGCCATGCTTATGTCAAAGATGGGACCAAAGGCATTGCCTGTTGCAAGAAGTTTACTCTCAGATGCATTAAGGCTTGACCCTAACAATCGTAAAGCTTGGTATTACTTGGGAATGATTCACAGAGATGATGGACGGATGGCTGATGCAGCAGACTGCTTTCAGGCAGCTACCATGCTTGAAGAATCTGATCCTATCGAAAGCTTCAGCTCTATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005516
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_7 TPR_8

Protein Analysis

694

Amino Acids

77.04

Weight (kDa)

5.98

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 636 - 678 5.6e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 903
AciI CCGC 3 cut(s) 960, 1384, 1448
AclWI GGATC 6 cut(s) 754, 794, 807, 1359, 1372, 2048
AcsI RAATTY 8 cut(s) 38, 55, 630, 772, 916, 1038, 1179, 1640
AcuI CTGAAG 4 cut(s) 1196, 1239, 1751, 2053
AdeI CACNNNGTG 1 cut(s) 1238
AfaI GTAC 2 cut(s) 185, 1346
AfiI CCNNNNNNNGG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 901
AhdI GACNNNNNGTC 1 cut(s) 507
AjnI CCWGG 2 cut(s) 886, 1849
Alw21I GWGCWC 3 cut(s) 211, 525, 1308
Alw26I GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
AlwI GGATC 6 cut(s) 754, 794, 807, 1359, 1372, 2048
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 1722
AoxI GGCC 4 cut(s) 295, 1242, 1481, 1595
ApeKI GCWGC 9 cut(s) 242, 331, 338, 410, 1031, 1064, 1742, 2012, 2030
ApoI RAATTY 8 cut(s) 38, 55, 630, 772, 916, 1038, 1179, 1640
AspLEI GCGC 1 cut(s) 1332
AspS9I GGNCC 4 cut(s) 680, 1481, 1595, 1889
AvaI CYCGRG 1 cut(s) 1722
AvaII GGWCC 2 cut(s) 680, 1889
BaeGI GKGCMC 1 cut(s) 589
BamHI GGATCC 2 cut(s) 799, 1364
BanII GRGCYC 2 cut(s) 166, 525
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BauI CACGAG 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 1133, 1202
Bbv12I GWGCWC 3 cut(s) 211, 525, 1308
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 9 cut(s) 254, 325, 343, 397, 1018, 1076, 1729, 2024, 2042
BccI CCATC 7 cut(s) 218, 465, 811, 1525, 1879, 1988, 1996
BceAI ACGGC 2 cut(s) 425, 1229
BciT130I CCWGG 2 cut(s) 888, 1851
BcoDI GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
BfaI CTAG 6 cut(s) 303, 671, 923, 1397, 1805, 1832
BfmI CTRYAG 3 cut(s) 246, 516, 1743
Bme1390I CCNGG 2 cut(s) 888, 1851
Bme18I GGWCC 2 cut(s) 680, 1889
BmeRI GACNNNNNGTC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 1722
BmgT120I GGNCC 4 cut(s) 680, 1481, 1595, 1889
BmiI GGNNCC 4 cut(s) 553, 801, 1366, 1890
BmrFI CCNGG 2 cut(s) 888, 1851
BmrI ACTGGG 1 cut(s) 681
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 1133, 1202
BpmI CTGGAG 1 cut(s) 909
Bpu10I CCTNAGC 2 cut(s) 1068, 1490
Bsa29I ATCGAT 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 1209
BsaJI CCNNGG 3 cut(s) 441, 781, 1620
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 1898
BseBI CCWGG 2 cut(s) 888, 1851
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 441, 781, 1620
BseGI GGATG 7 cut(s) 97, 1123, 1462, 1540, 1630, 1787, 2007
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMI GCAATG 1 cut(s) 1898
BseMII CTCAG 7 cut(s) 264, 1059, 1121, 1504, 1615, 1628, 1938
BseNI ACTGG 1 cut(s) 687
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 9 cut(s) 254, 325, 343, 397, 1018, 1076, 1729, 2024, 2042
BsgI GTGCAG 1 cut(s) 1739
Bsh1236I CGCG 1 cut(s) 903
BshFI GGCC 4 cut(s) 297, 1244, 1483, 1597
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 211, 525, 1308
BsiHKCI CYCGRG 1 cut(s) 1722
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 1902
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
BsmFI GGGAC 1 cut(s) 1902
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 4 cut(s) 297, 1244, 1483, 1597
Bso31I GGTCTC 1 cut(s) 1209
BsoBI CYCGRG 1 cut(s) 1722
Bsp1286I GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
Bsp143I GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
BspACI CCGC 3 cut(s) 960, 1384, 1448
BspANI GGCC 4 cut(s) 297, 1244, 1483, 1597
BspCNI CTCAG 7 cut(s) 265, 1060, 1120, 1503, 1614, 1627, 1937
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 1 cut(s) 903
BspHI TCATGA 2 cut(s) 415, 1795
BspLI GGNNCC 4 cut(s) 553, 801, 1366, 1890
BspMAI CTGCAG 1 cut(s) 1747
BspPI GGATC 6 cut(s) 754, 794, 807, 1359, 1372, 2048
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 1209
BsrDI GCAATG 1 cut(s) 1898
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 687
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 441, 781, 1620
BssMI GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 781
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 2 cut(s) 888, 1851
Bst4CI ACNGT 3 cut(s) 505, 1023, 1553
Bst6I CTCTTC 4 cut(s) 216, 387, 732, 870
BstC8I GCNNGC 6 cut(s) 240, 336, 585, 1173, 1392, 1678
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 7 cut(s) 97, 1123, 1462, 1540, 1630, 1787, 2007
BstFNI CGCG 1 cut(s) 903
BstHHI GCGC 1 cut(s) 1332
BstKTI GATC 7 cut(s) 235, 762, 802, 882, 910, 1367, 2056
BstMAI GTCTC 6 cut(s) 331, 384, 494, 1209, 1454, 1519
BstMBI GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
BstMWI GCNNNNNNNGC 2 cut(s) 1091, 2012
BstNI CCWGG 2 cut(s) 888, 1851
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 886, 1849
BstSFI CTRYAG 3 cut(s) 246, 516, 1743
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 9 cut(s) 254, 325, 343, 397, 1018, 1076, 1729, 2024, 2042
BstV2I GAAGAC 2 cut(s) 1133, 1202
BstX2I RGATCY 2 cut(s) 799, 1364
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 2 cut(s) 799, 1364
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 4 cut(s) 297, 1244, 1483, 1597
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 7 cut(s) 97, 1123, 1462, 1540, 1630, 1787, 2007
BtsI GCAGTG 4 cut(s) 1051, 1140, 1484, 1751
BtsIMutI CAGTG 8 cut(s) 605, 806, 1019, 1051, 1140, 1440, 1484, 1751
Cac8I GCNNGC 6 cut(s) 240, 336, 585, 1173, 1392, 1678
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 2 cut(s) 415, 1795
CfoI GCGC 1 cut(s) 1332
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 680, 1481, 1595, 1889
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 1 cut(s) 1706
Csp6I GTAC 2 cut(s) 184, 1345
CspCI CAANNNNNGTGG 4 cut(s) 1008, 1043, 1798, 1833
CviQI GTAC 2 cut(s) 184, 1345
DpnI GATC 7 cut(s) 234, 761, 801, 881, 909, 1366, 2055
DpnII GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
DraI TTTAAA 2 cut(s) 966, 1128
DraIII CACNNNGTG 1 cut(s) 1238
DriI GACNNNNNGTC 1 cut(s) 507
Eam1104I CTCTTC 4 cut(s) 216, 387, 732, 870
Eam1105I GACNNNNNGTC 1 cut(s) 507
EarI CTCTTC 4 cut(s) 216, 387, 732, 870
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 781
Eco24I GRGCYC 2 cut(s) 166, 525
Eco31I GGTCTC 1 cut(s) 1209
Eco47I GGWCC 2 cut(s) 680, 1889
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 4 cut(s) 1196, 1239, 1751, 2053
Eco88I CYCGRG 1 cut(s) 1722
EcoICRI GAGCTC 1 cut(s) 523
EcoRI GAATTC 4 cut(s) 38, 55, 630, 916
EcoRII CCWGG 2 cut(s) 886, 1849
EcoT14I CCWWGG 1 cut(s) 781
EcoT22I ATGCAT 1 cut(s) 1933
EcoT38I GRGCYC 2 cut(s) 166, 525
ErhI CCWWGG 1 cut(s) 781
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 1573, 1605
FaqI GGGAC 1 cut(s) 1902
FauNDI CATATG 1 cut(s) 715
FokI GGATG 7 cut(s) 104, 1130, 1469, 1547, 1637, 1794, 2014
FriOI GRGCYC 2 cut(s) 166, 525
FspBI CTAG 6 cut(s) 303, 671, 923, 1397, 1805, 1832
GlaI GCGC 1 cut(s) 1331
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 4 cut(s) 297, 1244, 1483, 1597
HapII CCGG 1 cut(s) 298
HgaI GACGC 1 cut(s) 1706
HhaI GCGC 1 cut(s) 1332
Hin6I GCGC 1 cut(s) 1330
HinP1I GCGC 1 cut(s) 1330
HindIII AAGCTT 3 cut(s) 389, 1959, 2065
HinfI GANTC 8 cut(s) 5, 116, 311, 604, 1052, 1312, 1981, 2048
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 668, 683, 1919
Hpy188I TCNGA 9 cut(s) 636, 1192, 1219, 1270, 1426, 1604, 1617, 1927, 2053
Hpy8I GTNNAC 3 cut(s) 668, 683, 1919
HpyCH4III ACNGT 3 cut(s) 505, 1023, 1553
HpyCH4IV ACGT 1 cut(s) 1347
HpyF10VI GCNNNNNNNGC 2 cut(s) 1091, 2012
HpySE526I ACGT 1 cut(s) 1347
HspAI GCGC 1 cut(s) 1330
Kzo9I GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 528, 941, 1474
Lsp1109I GCAGC 9 cut(s) 254, 325, 343, 397, 1018, 1076, 1729, 2024, 2042
MaeI CTAG 6 cut(s) 303, 671, 923, 1397, 1805, 1832
MaeII ACGT 1 cut(s) 1347
MaeIII GTNAC 2 cut(s) 1438, 1553
MalI GATC 7 cut(s) 234, 761, 801, 881, 909, 1366, 2055
MboI GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
MfeI CAATTG 1 cut(s) 1539
MflI RGATCY 2 cut(s) 799, 1364
MhlI GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
MluI ACGCGT 1 cut(s) 901
MmeI TCCRAC 2 cut(s) 893, 1057
Mph1103I ATGCAT 1 cut(s) 1933
MseI TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1934
MslI CAYNNNNRTG 3 cut(s) 993, 1874, 1989
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 2 cut(s) 888, 1851
MunI CAATTG 1 cut(s) 1539
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 2 cut(s) 888, 1851
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 2 cut(s) 1091, 2012
NdeI CATATG 1 cut(s) 715
NdeII GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
NlaIV GGNNCC 4 cut(s) 553, 801, 1366, 1890
NmuCI GTSAC 1 cut(s) 1438
NsiI ATGCAT 1 cut(s) 1933
NspI RCATGY 1 cut(s) 338
PaeI GCATGC 1 cut(s) 338
PagI TCATGA 2 cut(s) 415, 1795
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 907
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 8 cut(s) 5, 116, 311, 604, 1052, 1312, 1981, 2048
Psp124BI GAGCTC 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 886, 1849
PspGI CCWGG 2 cut(s) 886, 1849
PspN4I GGNNCC 4 cut(s) 553, 801, 1366, 1890
PspPI GGNCC 4 cut(s) 680, 1481, 1595, 1889
PstI CTGCAG 1 cut(s) 1747
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 799, 1364
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 2 cut(s) 185, 1346
RsaNI GTAC 2 cut(s) 184, 1345
RseI CAYNNNNRTG 3 cut(s) 993, 1874, 1989
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1934
Sau3AI GATC 7 cut(s) 232, 759, 799, 879, 907, 1364, 2053
Sau96I GGNCC 4 cut(s) 680, 1481, 1595, 1889
ScrFI CCNGG 2 cut(s) 888, 1851
SduI GDGCHC 5 cut(s) 166, 211, 525, 589, 1308
SfcI CTRYAG 3 cut(s) 246, 516, 1743
SinI GGWCC 2 cut(s) 680, 1889
SmiMI CAYNNNNRTG 3 cut(s) 993, 1874, 1989
SphI GCATGC 1 cut(s) 338
SsiI CCGC 3 cut(s) 960, 1384, 1448
SspI AATATT 2 cut(s) 103, 453
SspMI CTAG 6 cut(s) 303, 671, 923, 1397, 1805, 1832
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 2 cut(s) 886, 1849
StyI CCWWGG 1 cut(s) 781
TaaI ACNGT 3 cut(s) 505, 1023, 1553
TaiI ACGT 1 cut(s) 1350
TaqI TCGA 3 cut(s) 231, 511, 2061
TaqII GACCGA 1 cut(s) 1634
TauI GCSGC 2 cut(s) 962, 1451
TfiI GAWTC 8 cut(s) 5, 116, 311, 604, 1052, 1312, 1981, 2048
Tru1I TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1934
Tru9I TTAA 9 cut(s) 401, 755, 965, 1127, 1274, 1373, 1497, 1608, 1934
TscAI CASTG 8 cut(s) 605, 813, 1026, 1051, 1140, 1447, 1491, 1758
TseFI GTSAC 1 cut(s) 1438
TseI GCWGC 9 cut(s) 242, 331, 338, 410, 1031, 1064, 1742, 2012, 2030
Tsp45I GTSAC 1 cut(s) 1438
TspGWI ACGGA 2 cut(s) 1357, 2014
TspRI CASTG 8 cut(s) 605, 813, 1026, 1051, 1140, 1447, 1491, 1758
VpaK11BI GGWCC 2 cut(s) 680, 1889
XapI RAATTY 8 cut(s) 38, 55, 630, 772, 916, 1038, 1179, 1640
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 1 cut(s) 338
XspI CTAG 6 cut(s) 303, 671, 923, 1397, 1805, 1832
Zsp2I ATGCAT 1 cut(s) 1933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.