Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464321.1

Orthogroup ID

OG0006321

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1897

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464321.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1474 bp

taatttacaggaagcaagagcccttcttggaaagttagagtaccaaagaggtaatcttgaaggtgctcttcgtgtgtttgatggcatcgatctgcaagcagctatagagcgattgcaaccttctattactgagaaaacaccttctaagaaaggccggtctagagctgattcacagcattcagtctcgcagcatgctgccacccttgttcttgatgccatatacttgaaagccaagtctcttcataagcttggcagattaacagaggctgctcatgaatgtaaaaaagtgcttgatgccgtggaaaaaatattccatcaaggaatacctgatgcacaagtagatagtagattgcaggagacagtcagtcgagctgtagagctccttccagagctttggaaacaagctggttcctatcaagaaacaatctctgcttataggcgtgccctacttagtcagtggaatctggataatgattgctgtgcaagaattcagaaagcatttgctgtgtttctgctgtatagtggactagaggctggtccacccagtttaggtgttcaggttgaaggttcatatgtgcctaaaaataatctggaagaggcaatcctgcttttaatgatccttttgagaaatttgttccaaggtaaaacgaaatgggatccatcactgacagaacatctaacatttgcactatctatatgcaaccagacttgtgtattagccaagcaacttgaagagatcatgcctggagtatatccacgcgttgatcgttggaattctctagctctgtgttatagtggagcaggacagaacaaagccgctttaaatctgttgaggaagtctttacacaaacatgaacgaccagatgaactcatgccactgttattggctgccaaaatttgcagtgaggattcccatgttgcagctgagggagttggatatgcacagagggctgttagtaattctcagggtaaggatgaacatttaaaggctgtgggtcttcgcttgttgggtctttgtttggggaagcaagctaaaatttcttcctctgactttgagaggtctcgtcttcagtctgaagcactaaaatcactaagtgaggccgttgctttggagaagaacaattcagatttaatttttgagttgggggttcaatatgcagagcacaggaatctaaatacagctttgcgctatgcaaagaagtacgttgatgaaacagggggatccgtattaaaaggttggcggttgcttgctctagttttatctgctcaacagcgattttcagaggctcatgtagtcactgatgcggctttggatgagactgcaaaatgggagcaagggccactgctcaggcttaaagcaaagctgaaagtctcccaatccttaccgatggatgcaattgaaacttaccgttaccttcttgctttggttcaagcacaaaggaaatcttttggacctctcagagttaattctcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_7 TPR_8

Protein Analysis

491

Amino Acids

54.51

Weight (kDa)

8.9

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43040 AT2G43040
fragaria_vesca	FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960
malus_domestica	MD09G1145800.v1.1 MD17G1132300.v1.1
prunus_persica	Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1
pyrus_communis	pycom09g06610 pycom17g12580 pycom17g12590
rosa_chinensis	RchiOBHm_Chr2g0152551
rosa_laevigata	RLG00000020645
rosa_multiflora	Rmu_co8464321.1_g000001 Rmu_sc0014904.1_g000001 Rmu_sc0027677.1_g000002
rosa_roxburghii	Rroxscaffold_2G00095610
rosa_rugosa	Rorug02G0434500
rosa_samantha	Rh2AG495700 Rh2BG507500 Rh2CG481900 Rh2DG518800
rosa_wichuraiana	Rw2G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	760
AciI	CCGC	3 cut(s)	817, 1241, 1305
AclWI	GGATC	5 cut(s)	611, 651, 664, 1216, 1229
AcsI	RAATTY	5 cut(s)	487, 629, 773, 895, 1036
AcuI	CTGAAG	2 cut(s)	1053, 1096
AdeI	CACNNNGTG	1 cut(s)	1095
AfaI	GTAC	2 cut(s)	42, 1203
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflIII	ACRYGT	1 cut(s)	758
AgsI	TTSAA	7 cut(s)	60, 227, 564, 732, 1152, 1401, 1431
AhdI	GACNNNNNGTC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	743
Alw21I	GWGCWC	3 cut(s)	68, 382, 1165
Alw26I	GTCTC	6 cut(s)	188, 241, 351, 1066, 1311, 1376
AlwI	GGATC	5 cut(s)	611, 651, 664, 1216, 1229
AlwNI	CAGNNNCTG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	152, 1099, 1338
ApeKI	GCWGC	6 cut(s)	99, 188, 195, 267, 888, 921
ApoI	RAATTY	5 cut(s)	487, 629, 773, 895, 1036
AspLEI	GCGC	1 cut(s)	1189
AspS9I	GGNCC	3 cut(s)	537, 1338, 1452
AvaII	GGWCC	2 cut(s)	537, 1452
BaeGI	GKGCMC	1 cut(s)	446
BamHI	GGATCC	2 cut(s)	656, 1221
BanII	GRGCYC	2 cut(s)	23, 382
BarI	GAAGNNNNNNTAC	2 cut(s)	367, 399
BbsI	GAAGAC	2 cut(s)	990, 1059
Bbv12I	GWGCWC	3 cut(s)	68, 382, 1165
BbvCI	CCTCAGC	1 cut(s)	925
BbvI	GCAGC	6 cut(s)	111, 182, 200, 254, 875, 933
BccI	CCATC	4 cut(s)	75, 322, 668, 1382
BceAI	ACGGC	2 cut(s)	282, 1086
BciT130I	CCWGG	1 cut(s)	745
BcoDI	GTCTC	6 cut(s)	188, 241, 351, 1066, 1311, 1376
BfaI	CTAG	4 cut(s)	160, 528, 780, 1254
BfmI	CTRYAG	2 cut(s)	103, 373
BisI	GCNGC	8 cut(s)	100, 189, 196, 268, 817, 889, 922, 1306
BlsI	GCNGC	8 cut(s)	101, 190, 197, 269, 818, 890, 923, 1307
Bme1390I	CCNGG	1 cut(s)	745
Bme18I	GGWCC	2 cut(s)	537, 1452
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	537, 1338, 1452
BmiI	GGNNCC	3 cut(s)	410, 658, 1223
BmrFI	CCNGG	1 cut(s)	745
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	6 cut(s)	94, 203, 284, 320, 1292, 1382
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	2 cut(s)	990, 1059
BpmI	CTGGAG	1 cut(s)	766
Bpu10I	CCTNAGC	2 cut(s)	925, 1347
Bsa29I	ATCGAT	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	1066
BsaJI	CCNNGG	2 cut(s)	298, 638
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	544
BseBI	CCWGG	1 cut(s)	745
BseCI	ATCGAT	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	298, 638
BseGI	GGATG	3 cut(s)	980, 1319, 1397
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	5 cut(s)	121, 916, 978, 1361, 1472
BseNI	ACTGG	1 cut(s)	544
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	6 cut(s)	111, 182, 200, 254, 875, 933
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	3 cut(s)	154, 1101, 1340
BshVI	ATCGAT	1 cut(s)	88
BsiHKAI	GWGCWC	3 cut(s)	68, 382, 1165
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	6 cut(s)	188, 241, 351, 1066, 1311, 1376
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	154, 1101, 1340
Bso31I	GGTCTC	1 cut(s)	1066
Bsp1286I	GDGCHC	5 cut(s)	23, 68, 382, 446, 1165
Bsp143I	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
BspACI	CCGC	3 cut(s)	817, 1241, 1305
BspANI	GGCC	3 cut(s)	154, 1101, 1340
BspCNI	CTCAG	5 cut(s)	122, 917, 977, 1360, 1471
BspDI	ATCGAT	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	410, 658, 1223
BspPI	GGATC	5 cut(s)	611, 651, 664, 1216, 1229
BspQI	GCTCTTC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	1066
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	298, 638
BssMI	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	745
Bst4CI	ACNGT	3 cut(s)	362, 880, 1410
Bst6I	CTCTTC	4 cut(s)	73, 244, 589, 727
BstC8I	GCNNGC	5 cut(s)	97, 193, 442, 1030, 1249
BstDEI	CTNAG	9 cut(s)	130, 145, 450, 925, 964, 1092, 1347, 1458, 1471
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	980, 1319, 1397
BstFNI	CGCG	1 cut(s)	760
BstHHI	GCGC	1 cut(s)	1189
BstKTI	GATC	6 cut(s)	92, 619, 659, 739, 767, 1224
BstMAI	GTCTC	6 cut(s)	188, 241, 351, 1066, 1311, 1376
BstMBI	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
BstMWI	GCNNNNNNNGC	1 cut(s)	948
BstNI	CCWGG	1 cut(s)	745
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	743
BstSFI	CTRYAG	2 cut(s)	103, 373
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	6 cut(s)	111, 182, 200, 254, 875, 933
BstV2I	GAAGAC	2 cut(s)	990, 1059
BstX2I	RGATCY	2 cut(s)	656, 1221
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	2 cut(s)	656, 1221
Bsu15I	ATCGAT	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	154, 1101, 1340
BsuTUI	ATCGAT	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	980, 1319, 1397
BtsI	GCAGTG	2 cut(s)	908, 1341
BtsIMutI	CAGTG	6 cut(s)	462, 663, 876, 908, 1297, 1341
Cac8I	GCNNGC	5 cut(s)	97, 193, 442, 1030, 1249
CaiI	CAGNNNCTG	1 cut(s)	267
CciI	TCATGA	1 cut(s)	272
CfoI	GCGC	1 cut(s)	1189
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	537, 1338, 1452
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	41, 1202
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	7 cut(s)	192, 273, 740, 852, 872, 915, 1290
CviQI	GTAC	2 cut(s)	41, 1202
DdeI	CTNAG	9 cut(s)	130, 145, 450, 925, 964, 1092, 1347, 1458, 1471
DpnI	GATC	6 cut(s)	91, 618, 658, 738, 766, 1223
DpnII	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
DraI	TTTAAA	2 cut(s)	823, 985
DraIII	CACNNNGTG	1 cut(s)	1095
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1104I	CTCTTC	4 cut(s)	73, 244, 589, 727
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	4 cut(s)	73, 244, 589, 727
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	638
Eco24I	GRGCYC	2 cut(s)	23, 382
Eco31I	GGTCTC	1 cut(s)	1066
Eco47I	GGWCC	2 cut(s)	537, 1452
Eco53kI	GAGCTC	1 cut(s)	380
Eco57I	CTGAAG	2 cut(s)	1053, 1096
EcoICRI	GAGCTC	1 cut(s)	380
EcoRI	GAATTC	2 cut(s)	487, 773
EcoRII	CCWGG	1 cut(s)	743
EcoT14I	CCWWGG	1 cut(s)	638
EcoT38I	GRGCYC	2 cut(s)	23, 382
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	7 cut(s)	195, 276, 743, 855, 875, 918, 1293
FalI	AAGNNNNNCTT	4 cut(s)	52, 84, 1430, 1462
FatI	CATG	7 cut(s)	191, 272, 739, 851, 871, 914, 1289
FauNDI	CATATG	1 cut(s)	572
Fnu4HI	GCNGC	8 cut(s)	100, 189, 196, 268, 817, 889, 922, 1306
FokI	GGATG	3 cut(s)	987, 1326, 1404
FriOI	GRGCYC	2 cut(s)	23, 382
Fsp4HI	GCNGC	8 cut(s)	100, 189, 196, 268, 817, 889, 922, 1306
FspBI	CTAG	4 cut(s)	160, 528, 780, 1254
GlaI	GCGC	1 cut(s)	1188
GluI	GCNGC	8 cut(s)	100, 189, 196, 268, 817, 889, 922, 1306
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	3 cut(s)	154, 1101, 1340
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	1189
Hin1II	CATG	7 cut(s)	195, 276, 743, 855, 875, 918, 1293
Hin6I	GCGC	1 cut(s)	1187
HinP1I	GCGC	1 cut(s)	1187
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	4 cut(s)	168, 461, 909, 1169
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	525, 540
Hpy188I	TCNGA	6 cut(s)	493, 1049, 1076, 1127, 1283, 1461
Hpy188III	TCNNGA	8 cut(s)	57, 160, 210, 273, 387, 417, 465, 591
Hpy8I	GTNNAC	2 cut(s)	525, 540
HpyAV	CCTTC	7 cut(s)	33, 54, 130, 151, 393, 558, 1425
HpyCH4III	ACNGT	3 cut(s)	362, 880, 1410
HpyCH4IV	ACGT	1 cut(s)	1204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	948
HpyF3I	CTNAG	9 cut(s)	130, 145, 450, 925, 964, 1092, 1347, 1458, 1471
HpySE526I	ACGT	1 cut(s)	1204
Hsp92II	CATG	7 cut(s)	195, 276, 743, 855, 875, 918, 1293
HspAI	GCGC	1 cut(s)	1187
Kzo9I	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	385, 798, 1331
Lsp1109I	GCAGC	6 cut(s)	111, 182, 200, 254, 875, 933
LweI	GCATC	6 cut(s)	94, 203, 284, 320, 1292, 1382
MaeI	CTAG	4 cut(s)	160, 528, 780, 1254
MaeII	ACGT	1 cut(s)	1204
MaeIII	GTNAC	2 cut(s)	1295, 1410
MalI	GATC	6 cut(s)	91, 618, 658, 738, 766, 1223
MboI	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
MboII	GAAGA	8 cut(s)	60, 231, 606, 744, 990, 1033, 1059, 1127
MfeI	CAATTG	1 cut(s)	1396
MflI	RGATCY	2 cut(s)	656, 1221
MhlI	GDGCHC	5 cut(s)	23, 68, 382, 446, 1165
MluI	ACGCGT	1 cut(s)	758
MmeI	TCCRAC	2 cut(s)	750, 914
MseI	TTAA	8 cut(s)	258, 612, 822, 984, 1131, 1230, 1354, 1465
MslI	CAYNNNNRTG	1 cut(s)	850
MspA1I	CMGCKG	1 cut(s)	924
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	745
MunI	CAATTG	1 cut(s)	1396
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	745
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	1 cut(s)	948
NdeI	CATATG	1 cut(s)	572
NdeII	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
NlaIII	CATG	7 cut(s)	195, 276, 743, 855, 875, 918, 1293
NlaIV	GGNNCC	3 cut(s)	410, 658, 1223
NmuCI	GTSAC	1 cut(s)	1295
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PagI	TCATGA	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	764
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	4 cut(s)	168, 461, 909, 1169
PkrI	GCNGC	8 cut(s)	101, 190, 197, 269, 818, 890, 923, 1307
Psp124BI	GAGCTC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	743
PspN4I	GGNNCC	3 cut(s)	410, 658, 1223
PspPI	GGNCC	3 cut(s)	537, 1338, 1452
PstNI	CAGNNNCTG	1 cut(s)	267
PsuI	RGATCY	2 cut(s)	656, 1221
PvuII	CAGCTG	1 cut(s)	924
RsaI	GTAC	2 cut(s)	42, 1203
RsaNI	GTAC	2 cut(s)	41, 1202
RseI	CAYNNNNRTG	1 cut(s)	850
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	8 cut(s)	258, 612, 822, 984, 1131, 1230, 1354, 1465
SatI	GCNGC	8 cut(s)	100, 189, 196, 268, 817, 889, 922, 1306
Sau3AI	GATC	6 cut(s)	89, 616, 656, 736, 764, 1221
Sau96I	GGNCC	3 cut(s)	537, 1338, 1452
ScrFI	CCNGG	1 cut(s)	745
SduI	GDGCHC	5 cut(s)	23, 68, 382, 446, 1165
SfaNI	GCATC	6 cut(s)	94, 203, 284, 320, 1292, 1382
SfcI	CTRYAG	2 cut(s)	103, 373
SinI	GGWCC	2 cut(s)	537, 1452
SmiMI	CAYNNNNRTG	1 cut(s)	850
SphI	GCATGC	1 cut(s)	195
SsiI	CCGC	3 cut(s)	817, 1241, 1305
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	4 cut(s)	160, 528, 780, 1254
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	743
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	3 cut(s)	362, 880, 1410
TaiI	ACGT	1 cut(s)	1207
TaqI	TCGA	2 cut(s)	88, 368
TauI	GCSGC	2 cut(s)	819, 1308
TfiI	GAWTC	4 cut(s)	168, 461, 909, 1169
Tru1I	TTAA	8 cut(s)	258, 612, 822, 984, 1131, 1230, 1354, 1465
Tru9I	TTAA	8 cut(s)	258, 612, 822, 984, 1131, 1230, 1354, 1465
TscAI	CASTG	6 cut(s)	462, 670, 883, 908, 1304, 1348
TseFI	GTSAC	1 cut(s)	1295
TseI	GCWGC	6 cut(s)	99, 188, 195, 267, 888, 921
Tsp45I	GTSAC	1 cut(s)	1295
TspDTI	ATGAA	7 cut(s)	231, 289, 559, 868, 880, 991, 1225
TspGWI	ACGGA	1 cut(s)	1214
TspRI	CASTG	6 cut(s)	462, 670, 883, 908, 1304, 1348
VpaK11BI	GGWCC	2 cut(s)	537, 1452
XapI	RAATTY	5 cut(s)	487, 629, 773, 895, 1036
XbaI	TCTAGA	1 cut(s)	159
XceI	RCATGY	1 cut(s)	195
XspI	CTAG	4 cut(s)	160, 528, 780, 1254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.