Rw2G040780

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006321
Physical Location & Seq
Reverse (-)
66397336 .. 66400936
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040780.1

Sequence Viewer

Length: 2055 bp
ATGGATTCTGGCGAGTATGAGGAAGGCATGGTGGTTGAATTCTCTGCTAATGGGAATTCCATGAAATCAACTGATGTTGAAGCCAAGCTGGATGAAGGAAATATTCACGAGGCAGAATCTTCATTACGAGAGGGGTTATCACTCAATTTTGAGGAAGCAAGAGCCCTTCTTGGAAAGTTAGAGTACCAAAGAGGTAATCTTGAAGGTGCTCTTCGTGTGTTTGATGGCATCGATCTGCAAGCAGCTATAGAGCGATTGCAACCTTCTATTACTGAGAAAACACCTTCTAAGAAAGGCCGGTCTAGAGCTGATTCACAGCATTCAGTCTCGCAGCATGCTGCCACCCTTGTTCTTGATGCCATATACTTGAAAGCCAAGTCTCTTCATAAGCTTGGCAGATTAACAGAGGCTGCTCATGAATGTAAAAAAGTGCTTGATGCCGTGGAAAAAATATTCCATCAAGGAATACCTGATGCACAAGTGGATAGTAGATTGCAGGAGACAGTCAGTCGAGCTGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTCCTATCAAGAAACAATCTCTGCTTATAGGCGTGCCCTACTTAGTCAGTGGAATCTGGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTGTGTTTCTGCTGTATAGTGGACTAGAGGCTGGTCCACCCAGTTTAGGTGTTCAGGTTGAAGAGGCAATCCTGCTTTTAATGATCCTTTTGAGAAATTTGTTCCAAGGTAAAACGAAATGGGATCCATCACTGACAGAACATCTAACATTTGCACTATCTATATGCAATCAGACTTGTGTATTAGCAAAGCAACTTGAAGAGATCATGCCTGGAGTATATCCACGCGTTGATCGTTGGAATTCTCTAGCTCTGTGTTATAGTGGAGCAGGACAGAACAAAGCTGCTTTAAATCTGTTGAGGAAGTCTTTACACAAACATGAACGACCAGATGAACTCATGCCACTGTTATTGGCTGCCAAAATTTGCAGTGAGGATACCCATGTTGCAGCTGAGGGAGTTGGATATGCACAGAGGGCTGTTAGTAATTCTCAGGGTAAGGATGAACATTTAAAGGCTGTGGGTCTTCGCTTGTTGGGTCTTTGTTTGGGGAAGCAAGCTAAAATTTCTTCCTCTGACTTTGAGAGGTCTCGTCTTCAGTCTGAAGCACTAAAATCACTAAGTGAGGCCGTTGCTTTGGAGAAGAACAATTCAGATTTAATTTTTGAGTTGGGGGTTCAATATGCAGAGCACAGGAATCTAAATACAGCTTTGCGCTATGCAAAGAAGTACGTTGATGAAACAGGGGGATCCGTATTAAAAGGTTGGCGGTTGCTGGCTCTAGTTTTATCTGCTCAACAGCGATTTTCAGAGGCTCATGTAGTCACTGATGCGGCTTTGGATGAGACTGCAAAATGGGAGCAAGGGCCACTGCTCAGGCTTAAAGCAAAGCTGAAAGTCTCCCAATCCTTACCGATGGATGCAATTGAAACTTACCGTTACCTTCTTGCTTTGGTTCAAGCACAAAGGAAATCTTTTGGGCCTCTCAGAGTTAATTCTCAGACCGAGGATGATAAAGTCAATGAATTTGAAGTTTGGCATGGTTTGTCAAACTTATATGCCAGCCTTTCATATTGGAAGGACGCAGAAATATGTTTGGGTAAAGCCCGAGAGCTGAAGCATTACGCTGCAGAAACACTGCACACAGAAGGCATTATCTTGGAAGGATGTGGGAAAAGTCATGAAGCTCTAGCCACTTATATTGATGCTCTTATGCTAGAACCCTATTTTGTTCCTGGCAAGATTGTGGTTGCCATGCTTATGTCAAAGATGGGACCAAAGGCATTGCCTGTTGCAAGAAGTTTACTCTCAGATGCATTAAGGCTTGACCCTAACAATCGTAAAGCTTGGTATTACTTGGGAATGATTCACAGAGATGATGGACGGATGGCTGATGCAGCAGACTGCTTTCAGGCAGCTACCATGCTTGAAGAATCTGATCCTATCGAAAGCTTCAGCTCTATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005516
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_7 TPR_8

Protein Analysis

684

Amino Acids

75.96

Weight (kDa)

5.98

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 626 - 668 5.5e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 873
AciI CCGC 2 cut(s) 1354, 1418
AclWI GGATC 6 cut(s) 724, 764, 777, 1329, 1342, 2018
AcsI RAATTY 8 cut(s) 38, 55, 630, 742, 886, 1008, 1149, 1610
AcuI CTGAAG 4 cut(s) 1166, 1209, 1721, 2023
AdeI CACNNNGTG 1 cut(s) 1208
AfaI GTAC 2 cut(s) 185, 1316
AfiI CCNNNNNNNGG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 871
AhdI GACNNNNNGTC 1 cut(s) 507
AjnI CCWGG 2 cut(s) 856, 1819
Alw21I GWGCWC 3 cut(s) 211, 525, 1278
Alw26I GTCTC 6 cut(s) 331, 384, 494, 1179, 1424, 1489
AlwI GGATC 6 cut(s) 724, 764, 777, 1329, 1342, 2018
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 1692
AoxI GGCC 4 cut(s) 295, 1212, 1451, 1565
ApoI RAATTY 8 cut(s) 38, 55, 630, 742, 886, 1008, 1149, 1610
AspLEI GCGC 1 cut(s) 1302
AspS9I GGNCC 4 cut(s) 680, 1451, 1565, 1859
AvaI CYCGRG 1 cut(s) 1692
AvaII GGWCC 2 cut(s) 680, 1859
BaeGI GKGCMC 1 cut(s) 589
BaeI ACNNNNGTAYC 2 cut(s) 1014, 1047
BamHI GGATCC 2 cut(s) 769, 1334
BanII GRGCYC 2 cut(s) 166, 525
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BauI CACGAG 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 1103, 1172
Bbv12I GWGCWC 3 cut(s) 211, 525, 1278
BbvCI CCTCAGC 1 cut(s) 1038
BccI CCATC 7 cut(s) 218, 465, 781, 1495, 1849, 1958, 1966
BceAI ACGGC 2 cut(s) 425, 1199
BciT130I CCWGG 2 cut(s) 858, 1821
BciVI GTATCC 1 cut(s) 1015
BcoDI GTCTC 6 cut(s) 331, 384, 494, 1179, 1424, 1489
BfaI CTAG 6 cut(s) 303, 671, 893, 1367, 1775, 1802
BfmI CTRYAG 3 cut(s) 246, 516, 1713
BfuI GTATCC 1 cut(s) 1015
Bme1390I CCNGG 2 cut(s) 858, 1821
Bme18I GGWCC 2 cut(s) 680, 1859
BmeRI GACNNNNNGTC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 1692
BmgT120I GGNCC 4 cut(s) 680, 1451, 1565, 1859
BmiI GGNNCC 4 cut(s) 553, 771, 1336, 1860
BmrFI CCNGG 2 cut(s) 858, 1821
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 9 cut(s) 237, 346, 427, 463, 1405, 1495, 1780, 1888, 1969
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 1103, 1172
BpmI CTGGAG 1 cut(s) 879
Bpu10I CCTNAGC 2 cut(s) 1038, 1460
Bsa29I ATCGAT 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 1179
BsaJI CCNNGG 3 cut(s) 441, 751, 1590
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 1868
BseBI CCWGG 2 cut(s) 858, 1821
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 441, 751, 1590
BseGI GGATG 7 cut(s) 97, 1093, 1432, 1510, 1600, 1757, 1977
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMI GCAATG 1 cut(s) 1868
BseMII CTCAG 7 cut(s) 264, 1029, 1091, 1474, 1585, 1598, 1908
BseNI ACTGG 1 cut(s) 687
BseSI GKGCMC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 1709
Bsh1236I CGCG 1 cut(s) 873
BshFI GGCC 4 cut(s) 297, 1214, 1453, 1567
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 211, 525, 1278
BsiHKCI CYCGRG 1 cut(s) 1692
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 1872
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 6 cut(s) 331, 384, 494, 1179, 1424, 1489
BsmFI GGGAC 1 cut(s) 1872
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 4 cut(s) 297, 1214, 1453, 1567
Bso31I GGTCTC 1 cut(s) 1179
BsoBI CYCGRG 1 cut(s) 1692
Bsp1286I GDGCHC 5 cut(s) 166, 211, 525, 589, 1278
Bsp143I GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
BspACI CCGC 2 cut(s) 1354, 1418
BspANI GGCC 4 cut(s) 297, 1214, 1453, 1567
BspCNI CTCAG 7 cut(s) 265, 1030, 1090, 1473, 1584, 1597, 1907
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 1 cut(s) 873
BspHI TCATGA 2 cut(s) 415, 1765
BspLI GGNNCC 4 cut(s) 553, 771, 1336, 1860
BspMAI CTGCAG 1 cut(s) 1717
BspPI GGATC 6 cut(s) 724, 764, 777, 1329, 1342, 2018
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 1179
BsrDI GCAATG 1 cut(s) 1868
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 687
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 441, 751, 1590
BssMI GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 751
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 2 cut(s) 858, 1821
Bst4CI ACNGT 3 cut(s) 505, 993, 1523
Bst6I CTCTTC 4 cut(s) 216, 387, 702, 840
BstC8I GCNNGC 6 cut(s) 240, 336, 585, 1143, 1362, 1648
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 7 cut(s) 97, 1093, 1432, 1510, 1600, 1757, 1977
BstFNI CGCG 1 cut(s) 873
BstHHI GCGC 1 cut(s) 1302
BstKTI GATC 7 cut(s) 235, 732, 772, 852, 880, 1337, 2026
BstMAI GTCTC 6 cut(s) 331, 384, 494, 1179, 1424, 1489
BstMBI GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
BstMWI GCNNNNNNNGC 2 cut(s) 1061, 1982
BstNI CCWGG 2 cut(s) 858, 1821
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 856, 1819
BstSFI CTRYAG 3 cut(s) 246, 516, 1713
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 873
BstV2I GAAGAC 2 cut(s) 1103, 1172
BstX2I RGATCY 2 cut(s) 769, 1334
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 2 cut(s) 769, 1334
Bsu15I ATCGAT 1 cut(s) 231
BsuI GTATCC 1 cut(s) 1015
BsuRI GGCC 4 cut(s) 297, 1214, 1453, 1567
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 7 cut(s) 97, 1093, 1432, 1510, 1600, 1757, 1977
BtsI GCAGTG 3 cut(s) 1021, 1454, 1721
BtsIMutI CAGTG 7 cut(s) 605, 776, 989, 1021, 1410, 1454, 1721
Cac8I GCNNGC 6 cut(s) 240, 336, 585, 1143, 1362, 1648
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 2 cut(s) 415, 1765
CfoI GCGC 1 cut(s) 1302
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 680, 1451, 1565, 1859
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 1 cut(s) 1676
Csp6I GTAC 2 cut(s) 184, 1315
CspCI CAANNNNNGTGG 4 cut(s) 978, 1013, 1768, 1803
CviQI GTAC 2 cut(s) 184, 1315
DpnI GATC 7 cut(s) 234, 731, 771, 851, 879, 1336, 2025
DpnII GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
DraI TTTAAA 2 cut(s) 936, 1098
DraIII CACNNNGTG 1 cut(s) 1208
DriI GACNNNNNGTC 1 cut(s) 507
Eam1104I CTCTTC 4 cut(s) 216, 387, 702, 840
Eam1105I GACNNNNNGTC 1 cut(s) 507
EarI CTCTTC 4 cut(s) 216, 387, 702, 840
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 751
Eco24I GRGCYC 2 cut(s) 166, 525
Eco31I GGTCTC 1 cut(s) 1179
Eco47I GGWCC 2 cut(s) 680, 1859
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 4 cut(s) 1166, 1209, 1721, 2023
Eco88I CYCGRG 1 cut(s) 1692
EcoICRI GAGCTC 1 cut(s) 523
EcoRI GAATTC 4 cut(s) 38, 55, 630, 886
EcoRII CCWGG 2 cut(s) 856, 1819
EcoT14I CCWWGG 1 cut(s) 751
EcoT22I ATGCAT 1 cut(s) 1903
EcoT38I GRGCYC 2 cut(s) 166, 525
ErhI CCWWGG 1 cut(s) 751
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 1543, 1575
FaqI GGGAC 1 cut(s) 1872
FokI GGATG 7 cut(s) 104, 1100, 1439, 1517, 1607, 1764, 1984
FriOI GRGCYC 2 cut(s) 166, 525
FspBI CTAG 6 cut(s) 303, 671, 893, 1367, 1775, 1802
GlaI GCGC 1 cut(s) 1301
GsuI CTGGAG 1 cut(s) 879
HaeIII GGCC 4 cut(s) 297, 1214, 1453, 1567
HapII CCGG 1 cut(s) 298
HgaI GACGC 1 cut(s) 1676
HhaI GCGC 1 cut(s) 1302
Hin6I GCGC 1 cut(s) 1300
HinP1I GCGC 1 cut(s) 1300
HindIII AAGCTT 3 cut(s) 389, 1929, 2035
HinfI GANTC 7 cut(s) 5, 116, 311, 604, 1282, 1951, 2018
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 668, 683, 1889
Hpy188III TCNNGA 9 cut(s) 107, 200, 303, 353, 416, 530, 560, 608, 1766
Hpy8I GTNNAC 3 cut(s) 668, 683, 1889
HpyCH4III ACNGT 3 cut(s) 505, 993, 1523
HpyCH4IV ACGT 1 cut(s) 1317
HpyF10VI GCNNNNNNNGC 2 cut(s) 1061, 1982
HpySE526I ACGT 1 cut(s) 1317
HspAI GCGC 1 cut(s) 1300
Kzo9I GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 528, 911, 1444
LweI GCATC 9 cut(s) 237, 346, 427, 463, 1405, 1495, 1780, 1888, 1969
MaeI CTAG 6 cut(s) 303, 671, 893, 1367, 1775, 1802
MaeII ACGT 1 cut(s) 1317
MaeIII GTNAC 2 cut(s) 1408, 1523
MalI GATC 7 cut(s) 234, 731, 771, 851, 879, 1336, 2025
MboI GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
MfeI CAATTG 1 cut(s) 1509
MflI RGATCY 2 cut(s) 769, 1334
MhlI GDGCHC 5 cut(s) 166, 211, 525, 589, 1278
MluI ACGCGT 1 cut(s) 871
MmeI TCCRAC 2 cut(s) 863, 1027
Mph1103I ATGCAT 1 cut(s) 1903
MseI TTAA 9 cut(s) 401, 725, 935, 1097, 1244, 1343, 1467, 1578, 1904
MslI CAYNNNNRTG 3 cut(s) 963, 1844, 1959
MspA1I CMGCKG 1 cut(s) 1037
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 2 cut(s) 858, 1821
MunI CAATTG 1 cut(s) 1509
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 2 cut(s) 858, 1821
MvnI CGCG 1 cut(s) 873
MwoI GCNNNNNNNGC 2 cut(s) 1061, 1982
NdeII GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
NlaIV GGNNCC 4 cut(s) 553, 771, 1336, 1860
NmuCI GTSAC 1 cut(s) 1408
NsiI ATGCAT 1 cut(s) 1903
NspI RCATGY 1 cut(s) 338
PaeI GCATGC 1 cut(s) 338
PagI TCATGA 2 cut(s) 415, 1765
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 877
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 7 cut(s) 5, 116, 311, 604, 1282, 1951, 2018
Psp124BI GAGCTC 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 856, 1819
PspGI CCWGG 2 cut(s) 856, 1819
PspN4I GGNNCC 4 cut(s) 553, 771, 1336, 1860
PspPI GGNCC 4 cut(s) 680, 1451, 1565, 1859
PstI CTGCAG 1 cut(s) 1717
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 769, 1334
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 2 cut(s) 185, 1316
RsaNI GTAC 2 cut(s) 184, 1315
RseI CAYNNNNRTG 3 cut(s) 963, 1844, 1959
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 9 cut(s) 401, 725, 935, 1097, 1244, 1343, 1467, 1578, 1904
Sau3AI GATC 7 cut(s) 232, 729, 769, 849, 877, 1334, 2023
Sau96I GGNCC 4 cut(s) 680, 1451, 1565, 1859
ScrFI CCNGG 2 cut(s) 858, 1821
SduI GDGCHC 5 cut(s) 166, 211, 525, 589, 1278
SfaNI GCATC 9 cut(s) 237, 346, 427, 463, 1405, 1495, 1780, 1888, 1969
SfcI CTRYAG 3 cut(s) 246, 516, 1713
SinI GGWCC 2 cut(s) 680, 1859
SmiMI CAYNNNNRTG 3 cut(s) 963, 1844, 1959
SphI GCATGC 1 cut(s) 338
SsiI CCGC 2 cut(s) 1354, 1418
SspI AATATT 2 cut(s) 103, 453
SspMI CTAG 6 cut(s) 303, 671, 893, 1367, 1775, 1802
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 2 cut(s) 856, 1819
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 3 cut(s) 505, 993, 1523
TaiI ACGT 1 cut(s) 1320
TaqI TCGA 3 cut(s) 231, 511, 2031
TaqII GACCGA 1 cut(s) 1604
TauI GCSGC 1 cut(s) 1421
TfiI GAWTC 7 cut(s) 5, 116, 311, 604, 1282, 1951, 2018
Tru1I TTAA 9 cut(s) 401, 725, 935, 1097, 1244, 1343, 1467, 1578, 1904
Tru9I TTAA 9 cut(s) 401, 725, 935, 1097, 1244, 1343, 1467, 1578, 1904
TscAI CASTG 7 cut(s) 605, 783, 996, 1021, 1417, 1461, 1728
TseFI GTSAC 1 cut(s) 1408
Tsp45I GTSAC 1 cut(s) 1408
TspGWI ACGGA 2 cut(s) 1327, 1984
TspRI CASTG 7 cut(s) 605, 783, 996, 1021, 1417, 1461, 1728
VpaK11BI GGWCC 2 cut(s) 680, 1859
XapI RAATTY 8 cut(s) 38, 55, 630, 742, 886, 1008, 1149, 1610
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 1 cut(s) 338
XspI CTAG 6 cut(s) 303, 671, 893, 1367, 1775, 1802
Zsp2I ATGCAT 1 cut(s) 1903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.