Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Forward (+)

18457322 .. 18460383

Gene Structure 3062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATGATAGAGAAGGCTCGTTCGTAGCTGTTAGGCGGATTTCTCAGGGTCTCGAACGAGGAAGCGTTTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGAGGTCTTTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACCTGCTCAGGAGGAATGCTTGCAGAGTTTGCAGAACCGCATTGACGTAGCTTATGATAGCACAATACCCTTGCATCAGGAAGCTCTAAGGGAGCTGTGGAAACTTTCCTTTCCTGAAGAAGAGCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTCAACAGATTTTAGGGGTGGTGGTTTCATATCTCTTGAAAACTTGCTGTACTTTGCCAGGAACTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGAATACCCCTTTGCTGTCGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCTTGAAGCAGTGAAACCGCGAACAATTGTTGGGGCAACTTTTCTGAAATTTCTTTCTGAGAACGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCTTTCAATGCGTGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGCTGGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCTTCTCAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

266

Amino Acids

30.5

Weight (kDa)

4.87

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	71 - 236	2.3e-55	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	1 cut(s)	565
AciI	CCGC	3 cut(s)	37, 223, 563
AclWI	GGATC	4 cut(s)	109, 356, 480, 663
AcsI	RAATTY	2 cut(s)	166, 593
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	416
AgsI	TTSAA	4 cut(s)	404, 551, 646, 672
AjnI	CCWGG	3 cut(s)	97, 422, 444
AluBI	AGCT	9 cut(s)	29, 110, 236, 269, 280, 310, 649, 727, 739
AluI	AGCT	9 cut(s)	29, 110, 236, 269, 280, 310, 649, 727, 739
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	2 cut(s)	56, 715
AlwI	GGATC	4 cut(s)	109, 356, 480, 663
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	166, 593
AseI	ATTAAT	1 cut(s)	320
Asp700I	GAANNNNTTC	2 cut(s)	309, 440
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	3 cut(s)	99, 424, 446
BcoDI	GTCTC	2 cut(s)	56, 715
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	3 cut(s)	99, 424, 446
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmrFI	CCNGG	3 cut(s)	99, 424, 446
BmsI	GCATC	3 cut(s)	268, 732, 769
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	749
Bpu10I	CCTNAGC	2 cut(s)	87, 192
BpuEI	CTTGAG	1 cut(s)	785
BsaBI	GATNNNNATC	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bse3DI	GCAATG	2 cut(s)	636, 668
Bse8I	GATNNNNATC	1 cut(s)	322
BseBI	CCWGG	3 cut(s)	99, 424, 446
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	10, 531
BseJI	GATNNNNATC	1 cut(s)	322
BseMI	GCAATG	2 cut(s)	636, 668
BseMII	CTCAG	7 cut(s)	59, 78, 158, 206, 318, 446, 594
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	56, 715
BsmI	GAATGC	2 cut(s)	206, 641
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	5 cut(s)	101, 178, 361, 472, 655
BspACI	CCGC	3 cut(s)	37, 223, 563
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	7 cut(s)	58, 79, 157, 205, 319, 447, 595
BspFNI	CGCG	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	4 cut(s)	109, 356, 480, 663
BspQI	GCTCTTC	2 cut(s)	300, 792
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	636, 668
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	5 cut(s)	101, 178, 361, 472, 655
Bst2UI	CCWGG	3 cut(s)	99, 424, 446
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	3 cut(s)	145, 300, 792
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	206, 678
BstDEI	CTNAG	8 cut(s)	45, 87, 144, 192, 272, 327, 455, 603
BstF5I	GGATG	2 cut(s)	10, 531
BstFNI	CGCG	1 cut(s)	565
BstKTI	GATC	5 cut(s)	104, 181, 364, 475, 658
BstMAI	GTCTC	2 cut(s)	56, 715
BstMBI	GATC	5 cut(s)	101, 178, 361, 472, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 673
BstNI	CCWGG	3 cut(s)	99, 424, 446
BstSCI	CCNGG	3 cut(s)	97, 422, 444
BstUI	CGCG	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	10, 531
BtsI	GCAGTG	2 cut(s)	338, 561
BtsIMutI	CAGTG	2 cut(s)	338, 561
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	206, 678
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	3 cut(s)	314, 526, 688
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	8 cut(s)	45, 87, 144, 192, 272, 327, 455, 603
DpnI	GATC	5 cut(s)	103, 180, 363, 474, 657
DpnII	GATC	5 cut(s)	101, 178, 361, 472, 655
Eam1104I	CTCTTC	3 cut(s)	145, 300, 792
EarI	CTCTTC	3 cut(s)	145, 300, 792
EciI	GGCGGA	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	97, 422, 444
EcoT22I	ATGCAT	1 cut(s)	762
FaeI	CATG	3 cut(s)	317, 529, 691
FaiI	YATR	7 cut(s)	240, 315, 395, 527, 685, 689, 755
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	3 cut(s)	313, 525, 687
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	17, 518
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	1 cut(s)	120
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	317, 529, 691
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	611
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	2 cut(s)	70, 369
Hpy188I	TCNGA	6 cut(s)	147, 328, 435, 456, 591, 604
Hpy188III	TCNNGA	6 cut(s)	53, 194, 263, 299, 401, 764
Hpy8I	GTNNAC	2 cut(s)	70, 369
HpyAV	CCTTC	4 cut(s)	8, 451, 461, 635
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	2 cut(s)	173, 231
HpyCH4V	TGCA	7 cut(s)	208, 217, 259, 617, 636, 641, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 673
HpyF3I	CTNAG	8 cut(s)	45, 87, 144, 192, 272, 327, 455, 603
HpySE526I	ACGT	2 cut(s)	173, 231
Hsp92II	CATG	3 cut(s)	317, 529, 691
Kzo9I	GATC	5 cut(s)	101, 178, 361, 472, 655
LguI	GCTCTTC	2 cut(s)	300, 792
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	3 cut(s)	268, 732, 769
MaeII	ACGT	2 cut(s)	173, 231
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	103, 180, 363, 474, 657
MboI	GATC	5 cut(s)	101, 178, 361, 472, 655
MboII	GAAGA	5 cut(s)	162, 314, 317, 761, 779
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	4 cut(s)	73, 166, 570, 593
MnlI	CCTC	8 cut(s)	53, 82, 116, 190, 450, 691, 760, 787
Mph1103I	ATGCAT	1 cut(s)	762
MroXI	GAANNNNTTC	2 cut(s)	309, 440
MseI	TTAA	3 cut(s)	320, 518, 696
MslI	CAYNNNNRTG	2 cut(s)	536, 704
MspA1I	CMGCKG	1 cut(s)	727
MspR9I	CCNGG	3 cut(s)	99, 424, 446
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	2 cut(s)	206, 641
MvaI	CCWGG	3 cut(s)	99, 424, 446
MvnI	CGCG	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	214, 673
NdeII	GATC	5 cut(s)	101, 178, 361, 472, 655
NlaIII	CATG	3 cut(s)	317, 529, 691
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	762
PaqCI	CACCTGC	1 cut(s)	196
PciSI	GCTCTTC	2 cut(s)	300, 792
PctI	GAATGC	2 cut(s)	206, 641
PdmI	GAANNNNTTC	2 cut(s)	309, 440
PfeI	GAWTC	1 cut(s)	611
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	3 cut(s)	97, 422, 444
PspGI	CCWGG	3 cut(s)	97, 422, 444
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	536, 704
SapI	GCTCTTC	2 cut(s)	300, 792
SaqAI	TTAA	3 cut(s)	320, 518, 696
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	5 cut(s)	101, 178, 361, 472, 655
Sau96I	GGNCC	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	99, 424, 446
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	268, 732, 769
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	536, 704
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	4 cut(s)	73, 166, 570, 593
SsiI	CCGC	3 cut(s)	37, 223, 563
StyD4I	CCNGG	3 cut(s)	97, 422, 444
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	2 cut(s)	176, 234
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	465
TasI	AATT	4 cut(s)	73, 166, 570, 593
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	3 cut(s)	320, 518, 696
Tru9I	TTAA	3 cut(s)	320, 518, 696
TscAI	CASTG	2 cut(s)	338, 561
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	66, 302, 382, 514, 722
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	338, 561
VpaK11BI	GGWCC	1 cut(s)	448
VspI	ATTAAT	1 cut(s)	320
XapI	RAATTY	2 cut(s)	166, 593
XmnI	GAANNNNTTC	2 cut(s)	309, 440
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.