Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Forward (+)

40158592 .. 40164538

Gene Structure 5947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG205500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTCTCCGATATTATAAATTGCTGGGCTGAGGTTGTGGCAGGATCAGCAGCTTGGCTTGGCCGAGGACTTTCTTGTGTGTGTGCACAGAGAAGAGAGAGTGATGCTCGTCCTTCCTTTGATCTAACCCCTGCCCAGGAGGAATGCCTGCTGAAACTACAAAGCCGGATAGATGTTGCCTATGACAGCTCAATCCCAGAGCACCAGGAAGCTTTGAGGGCCTTGTGGAGAGCTGCATTTCCGGAAGAAGAACTTCATGGTTTAATAACTGAGCAATGGAAGGAAATGGGATGGCAAGGAAAGGATCCGTCAACAGATTTTAGGGGTGGTGGTTTTATATCATTGGAGAATTTGTTGTTCTTTGCTAGGAATTTCCCGATGCTCGATCTTGAAGCAGTTAAACCGCGAACACTGGTGGGAGCAATTTTCTTGAAGTTTCTTGCAGAAAATGAATCAGCATTTGACCTTATATATTGCATCACATTCAAGCTAATGGACCATCAATGGCTTTCTATGCGTGCTTCTTATATGGATTTCAATACAGTGATGAAGTCCACACGCCGGCAATTGGAAAAAGAGCTTCTGTCTGAAGATGTAGCACGGCTGGAAGACTTGCCCTCATATGGCCTACTTTCCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

213

Amino Acids

24.38

Weight (kDa)

4.93

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	52 - 126	6e-26	ELMO/CED-12 family
ELMO_CED12	PF04727	141 - 183	1e-08	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AccII	CGCG	1 cut(s)	406
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	3 cut(s)	52, 299, 312
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	349, 370
AcuI	CTGAAG	1 cut(s)	609
AfiI	CCNNNNNNNGG	4 cut(s)	136, 561, 568, 623
AgsI	TTSAA	4 cut(s)	392, 433, 487, 538
AjnI	CCWGG	2 cut(s)	135, 204
AluBI	AGCT	6 cut(s)	53, 189, 212, 233, 490, 580
AluI	AGCT	6 cut(s)	53, 189, 212, 233, 490, 580
Alw21I	GWGCWC	2 cut(s)	88, 204
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	3 cut(s)	52, 299, 312
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	3 cut(s)	61, 219, 625
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	50, 233
ApoI	RAATTY	2 cut(s)	349, 370
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	219, 496
AvaII	GGWCC	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	2 cut(s)	88, 204
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	62, 220
BccI	CCATC	2 cut(s)	285, 507
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	137, 206
BfaI	CTAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	51, 234
BlsI	GCNGC	2 cut(s)	52, 235
Bme1390I	CCNGG	2 cut(s)	137, 206
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	2 cut(s)	219, 496
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	137, 206
BmsI	GCATC	3 cut(s)	94, 369, 486
BpiI	GAAGAC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	64, 135
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 561, 568, 623
Bse118I	RCCGGY	1 cut(s)	561
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	281
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	137, 206
BseDI	CCNNGG	2 cut(s)	64, 135
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	4 cut(s)	136, 561, 568, 623
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	21, 261
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	62, 220
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	3 cut(s)	63, 221, 627
BsiHKAI	GWGCWC	2 cut(s)	88, 204
BsiSI	CCGG	3 cut(s)	166, 242, 562
BslI	CCNNNNNNNGG	4 cut(s)	136, 561, 568, 623
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	63, 221, 627
Bsp1286I	GDGCHC	2 cut(s)	88, 204
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	44, 121, 304, 385
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	3 cut(s)	63, 221, 627
BspCNI	CTCAG	2 cut(s)	22, 262
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	52, 299, 312
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	64, 135
BssMI	GATC	4 cut(s)	44, 121, 304, 385
Bst2UI	CCWGG	2 cut(s)	137, 206
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	149, 519, 563
BstDEI	CTNAG	2 cut(s)	30, 270
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	406
BstKTI	GATC	4 cut(s)	47, 124, 307, 388
BstMBI	GATC	4 cut(s)	44, 121, 304, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 218, 514
BstNI	CCWGG	2 cut(s)	137, 206
BstSCI	CCNGG	2 cut(s)	135, 204
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	62, 220
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	63, 221, 627
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	410, 549
Cac8I	GCNNGC	3 cut(s)	149, 519, 563
Cfr10I	RCCGGY	1 cut(s)	561
Cfr13I	GGNCC	2 cut(s)	219, 496
CviAII	CATG	1 cut(s)	257
DdeI	CTNAG	2 cut(s)	30, 270
DpnI	GATC	4 cut(s)	46, 123, 306, 387
DpnII	GATC	4 cut(s)	44, 121, 304, 385
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	135, 204
FaeI	CATG	1 cut(s)	260
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	1 cut(s)	256
FauNDI	CATATG	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	51, 234
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	51, 234
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	2 cut(s)	51, 234
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	63, 221, 627
HapII	CCGG	3 cut(s)	166, 242, 562
Hin1II	CATG	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	3 cut(s)	166, 242, 562
Hpy166II	GTNNAC	3 cut(s)	86, 312, 555
Hpy188I	TCNGA	2 cut(s)	10, 589
Hpy188III	TCNNGA	5 cut(s)	242, 376, 389, 430, 636
Hpy8I	GTNNAC	3 cut(s)	86, 312, 555
HpyAV	CCTTC	2 cut(s)	123, 274
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	4 cut(s)	86, 236, 443, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 218, 514
HpyF3I	CTNAG	2 cut(s)	30, 270
Hsp92II	CATG	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	241
KroI	GCCGGC	1 cut(s)	561
KroNI	GCCGGC	1 cut(s)	563
Kzo9I	GATC	4 cut(s)	44, 121, 304, 385
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	2 cut(s)	62, 220
LweI	GCATC	3 cut(s)	94, 369, 486
MaeI	CTAG	1 cut(s)	366
MalI	GATC	4 cut(s)	46, 123, 306, 387
MboI	GATC	4 cut(s)	44, 121, 304, 385
MboII	GAAGA	5 cut(s)	105, 257, 260, 602, 620
MfeI	CAATTG	1 cut(s)	566
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	88, 204
MluCI	AATT	5 cut(s)	19, 349, 370, 423, 566
MnlI	CCTC	5 cut(s)	25, 59, 133, 210, 628
MroI	TCCGGA	1 cut(s)	241
MroNI	GCCGGC	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	263, 399
MspI	CCGG	3 cut(s)	166, 242, 562
MspR9I	CCNGG	2 cut(s)	137, 206
MunI	CAATTG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	137, 206
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	47, 218, 514
NaeI	GCCGGC	1 cut(s)	563
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	4 cut(s)	44, 121, 304, 385
NgoMIV	GCCGGC	1 cut(s)	561
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	89
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	52, 235
PsiI	TTATAA	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	135, 204
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	135, 204
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	219, 496
PsuI	RGATCY	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	263, 399
SatI	GCNGC	2 cut(s)	51, 234
Sau3AI	GATC	4 cut(s)	44, 121, 304, 385
Sau96I	GGNCC	2 cut(s)	219, 496
ScrFI	CCNGG	2 cut(s)	137, 206
SduI	GDGCHC	2 cut(s)	88, 204
SetI	ASST	8 cut(s)	36, 55, 191, 214, 235, 468, 492, 582
SfaNI	GCATC	3 cut(s)	94, 369, 486
SinI	GGWCC	1 cut(s)	496
Sse9I	AATT	5 cut(s)	19, 349, 370, 423, 566
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	135, 204
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	384
TasI	AATT	5 cut(s)	19, 349, 370, 423, 566
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	2 cut(s)	263, 399
Tru9I	TTAA	2 cut(s)	263, 399
TscAI	CASTG	2 cut(s)	417, 549
TseI	GCWGC	2 cut(s)	50, 233
TspDTI	ATGAA	3 cut(s)	245, 465, 563
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	417, 549
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	349, 370
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.