Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Reverse (-)

26370863 .. 26375559

Gene Structure 4697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGACGATAGAGGAGGCTCATTCGTGGCGGTGAGGAGGATTTCGCAAGGTCTCGATGGTCGTGGCAGTACCTGCCATTCAAGTTCTGCTGAGGTTGTGGCAGGATCAGCAGCTTGGCTTGGCCGAGGACTTTCTTGTGTGTGTGCACAGAGAAGAGAGAGTGATGCTCGTCCTTCCTTTGATCTAACCCCTGCCCAGGAGGAATGCCTGCTGAAACTACAAAGCCGGATAGATGTTGCCTATGACAGCTCAATCCCAGAGCACCAGACATTATGTGCTGTGGCTGTTGAATATCAGCATTGGATTTTGTTTCTGTCCATCTTCCTAGAACTGTCTGATTATTTTTCTGGTCTTACCGTGTATTCATTTCTATGCTACGAGCCTACTTTTCTCTCACTCTGCGCTTGTGTGGTGAAATGCGTCTATTTGGCTGTTCTTGCTTGGGATCTTCTTCGAAAGCAAGAAGGTGATAGGTCAGTGTGGGAATACCCATTTGCTGTTGCTGGTGTTAATATTACATTCATGCTTATTCAGATGCTCGATCTTGAAGCAGTTAAACCGCGAACACTGGTGGGAGCAATTTTCTTGAAGTTTCTTGCAGAAAATGAATCAGCATTTGACCTTATATATTGCATCACATTCAAGCTAATGGACCATCAATGGCTTTCTATGCGTGCTTCTTATATGGATTTCAATACAGTGATGAAGTCCACACGCCGGCAATTGGAAAAAGAGCTTCTGTCTGAAGATGTAGCACGGCTGGAAGACTTGCCCTCATATGGCCTACTTTCCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

266

Amino Acids

29.93

Weight (kDa)

5.1

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	149 - 235	4.8e-19	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
AccII	CGCG	1 cut(s)	562
AciI	CCGC	2 cut(s)	29, 560
AclWI	GGATC	2 cut(s)	112, 453
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	4 cut(s)	196, 717, 724, 779
AgsI	TTSAA	6 cut(s)	81, 290, 548, 589, 643, 694
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	113, 249, 646, 736
AluI	AGCT	4 cut(s)	113, 249, 646, 736
Alw21I	GWGCWC	2 cut(s)	148, 264
Alw26I	GTCTC	1 cut(s)	56
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	112, 453
AlwNI	CAGNNNCTG	1 cut(s)	72
AoxI	GGCC	2 cut(s)	121, 781
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	43, 424, 479
AsuII	TTCGAA	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	652
BaeGI	GKGCMC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	2 cut(s)	148, 264
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	3 cut(s)	50, 326, 663
BceAI	ACGGC	1 cut(s)	773
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	652
BmgT120I	GGNCC	1 cut(s)	652
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	3 cut(s)	154, 525, 642
BpiI	GAAGAC	1 cut(s)	771
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	124, 195
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 717, 724, 779
Bse118I	RCCGGY	1 cut(s)	717
Bse1I	ACTGG	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	124, 195
BseLI	CCNNNNNNNGG	4 cut(s)	196, 717, 724, 779
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	2 cut(s)	27, 49
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	562
BshFI	GGCC	2 cut(s)	123, 783
BsiHKAI	GWGCWC	2 cut(s)	148, 264
BsiSI	CCGG	2 cut(s)	226, 718
BslI	CCNNNNNNNGG	4 cut(s)	196, 717, 724, 779
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	123, 783
Bso31I	GGTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	454
Bsp1286I	GDGCHC	2 cut(s)	148, 264
Bsp143I	GATC	4 cut(s)	104, 181, 445, 541
BspACI	CCGC	2 cut(s)	29, 560
BspANI	GGCC	2 cut(s)	123, 783
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	112, 453
BspT104I	TTCGAA	1 cut(s)	454
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	717
BsrI	ACTGG	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	717
BssECI	CCNNGG	2 cut(s)	124, 195
BssMI	GATC	4 cut(s)	104, 181, 445, 541
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	333, 358, 700
Bst6I	CTCTTC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	454
BstC8I	GCNNGC	3 cut(s)	209, 675, 719
BstDEI	CTNAG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	4 cut(s)	107, 184, 448, 544
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	4 cut(s)	104, 181, 445, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 107, 437, 670
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	123, 783
BtsIMutI	CAGTG	3 cut(s)	483, 566, 705
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	209, 675, 719
CaiI	CAGNNNCTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	717
Cfr13I	GGNCC	1 cut(s)	652
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	1 cut(s)	523
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	106, 183, 447, 543
DpnII	GATC	4 cut(s)	104, 181, 445, 541
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	765
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	526
FatI	CATG	1 cut(s)	522
FauNDI	CATATG	1 cut(s)	778
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	123, 783
HapII	CCGG	2 cut(s)	226, 718
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	526
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	608
HpaII	CCGG	2 cut(s)	226, 718
HphI	GGTGA	3 cut(s)	43, 424, 479
Hpy166II	GTNNAC	2 cut(s)	146, 711
Hpy188I	TCNGA	3 cut(s)	337, 534, 745
Hpy188III	TCNNGA	4 cut(s)	53, 545, 586, 792
Hpy8I	GTNNAC	2 cut(s)	146, 711
HpyAV	CCTTC	2 cut(s)	183, 458
HpyCH4III	ACNGT	3 cut(s)	333, 358, 700
HpyCH4V	TGCA	3 cut(s)	146, 599, 633
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 107, 437, 670
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	526
HspAI	GCGC	1 cut(s)	402
KroI	GCCGGC	1 cut(s)	717
KroNI	GCCGGC	1 cut(s)	719
Kzo9I	GATC	4 cut(s)	104, 181, 445, 541
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	3 cut(s)	154, 525, 642
MaeI	CTAG	1 cut(s)	326
MalI	GATC	4 cut(s)	106, 183, 447, 543
MboI	GATC	4 cut(s)	104, 181, 445, 541
MboII	GAAGA	6 cut(s)	165, 313, 440, 443, 758, 776
MfeI	CAATTG	1 cut(s)	722
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	148, 264
MluCI	AATT	2 cut(s)	579, 722
MnlI	CCTC	8 cut(s)	5, 8, 27, 30, 85, 119, 193, 784
MroNI	GCCGGC	1 cut(s)	717
MseI	TTAA	2 cut(s)	510, 555
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	2 cut(s)	226, 718
MspR9I	CCNGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	722
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	4 cut(s)	72, 107, 437, 670
NaeI	GCCGGC	1 cut(s)	719
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	4 cut(s)	104, 181, 445, 541
NgoMIV	GCCGGC	1 cut(s)	717
NlaIII	CATG	1 cut(s)	526
NmeAIII	GCCGAG	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	608
PkrI	GCNGC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	510, 555
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	4 cut(s)	104, 181, 445, 541
Sau96I	GGNCC	1 cut(s)	652
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	148, 264
SfaNI	GCATC	3 cut(s)	154, 525, 642
SfuI	TTCGAA	1 cut(s)	454
SinI	GGWCC	1 cut(s)	652
SmiMI	CAYNNNNRTG	1 cut(s)	370
Sse9I	AATT	2 cut(s)	579, 722
SsiI	CCGC	2 cut(s)	29, 560
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	333, 358, 700
TaqI	TCGA	3 cut(s)	54, 454, 540
TasI	AATT	2 cut(s)	579, 722
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	2 cut(s)	510, 555
Tru9I	TTAA	2 cut(s)	510, 555
TscAI	CASTG	3 cut(s)	483, 573, 705
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	354, 511, 621, 719
TspRI	CASTG	3 cut(s)	483, 573, 705
VneI	GTGCAC	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	652
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.