Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Forward (+)

9849369 .. 9854606

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10390.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTTCTCTGATATCATAAATTGCTTTGCTGAGGTTGTGGCAGGATCGGCAGCTTGGCTTGGCCGAGGACTTTCTTGTGTGTGTGCACAGAGAAGAGAGAGTGATGCTCGTCCTTCCTTTGATCTAACCCCTGCCCAGGAGGAATGCCTGCTGAAACTACAGAGCCGGATAGATATTGCCTATGACAGCTCAGTTCCTGAACACCAGGAAGCTTTGAGGGCCTTGTGGAGTGCTGCCTTTCCAGAAGAAGAACTTCGTGGTTTAATATCTGAGCAATGGAAGGAGATGGGATGGCAAGGAAAGGATCCGTCAACAGATTTTAGGGGTGGTGGTTTTATTTCGTTGGAGAATTTGATGTTCTTTGCTCGGAATTTCCCGAAATCTTTCCAGGATCTGCTTCGAAAGCAAGAAGGTGATAGGTCAGTGTGGGAATACCCATTTGCCGTTGCTGGTGTTAATATTACATTCATGCTTATTCAGATGCTCGATCTTGAAGCAGTTAAACCTCGAACACTGGTGGGAGCAATATTCTTGAAGTTTCTTGCAGAAAATGAATCAGCATTTGACCTTATATATTGCATCACATTCAAGCTAATGGACCATCAATGGCTGTCTATGCGTGCTTCTTATATGGATTTTAATACGGTGATGAAATCCACTCGCCGGCAGTTGGAAAAAGAGCTTCTGTCTGAAGATGTAGCACGGCTGGAAGACTTGCCCTCATATGGCCTACTTTCCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

248

Amino Acids

28.27

Weight (kDa)

4.92

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	72 - 237	3.9e-54	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	52, 299, 312, 399
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	349, 370
AcuI	CTGAAG	1 cut(s)	711
AfiI	CCNNNNNNNGG	4 cut(s)	136, 663, 670, 725
AgsI	TTSAA	3 cut(s)	494, 535, 589
AjnI	CCWGG	3 cut(s)	135, 204, 387
AluBI	AGCT	5 cut(s)	53, 189, 212, 592, 682
AluI	AGCT	5 cut(s)	53, 189, 212, 592, 682
Alw21I	GWGCWC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	4 cut(s)	52, 299, 312, 399
AlwNI	CAGNNNCTG	2 cut(s)	197, 394
AoxI	GGCC	3 cut(s)	61, 219, 727
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	50, 233
ApoI	RAATTY	2 cut(s)	349, 370
Asp700I	GAANNNNTTC	2 cut(s)	252, 383
AspS9I	GGNCC	2 cut(s)	219, 598
AsuHPI	GGTGA	2 cut(s)	425, 658
AsuII	TTCGAA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	598
BaeGI	GKGCMC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	62, 220
BccI	CCATC	3 cut(s)	280, 285, 609
BceAI	ACGGC	2 cut(s)	428, 719
BciT130I	CCWGG	3 cut(s)	137, 206, 389
BfmI	CTRYAG	1 cut(s)	158
BisI	GCNGC	2 cut(s)	51, 234
BlsI	GCNGC	2 cut(s)	52, 235
Bme1390I	CCNGG	3 cut(s)	137, 206, 389
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	2 cut(s)	219, 598
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	3 cut(s)	137, 206, 389
BmsI	GCATC	3 cut(s)	94, 471, 588
BpiI	GAAGAC	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	64, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 663, 670, 725
Bse118I	RCCGGY	1 cut(s)	663
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	3 cut(s)	137, 206, 389
BseDI	CCNNGG	2 cut(s)	64, 135
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	4 cut(s)	136, 663, 670, 725
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	21, 204, 261
BseNI	ACTGG	1 cut(s)	519
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	62, 220
BshFI	GGCC	3 cut(s)	63, 221, 729
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	166, 664
BslI	CCNNNNNNNGG	4 cut(s)	136, 663, 670, 725
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	63, 221, 729
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	5 cut(s)	44, 121, 304, 391, 487
BspANI	GGCC	3 cut(s)	63, 221, 729
BspCNI	CTCAG	3 cut(s)	22, 203, 262
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	4 cut(s)	52, 299, 312, 399
BspT104I	TTCGAA	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	519
BssAI	RCCGGY	1 cut(s)	663
BssECI	CCNNGG	2 cut(s)	64, 135
BssMI	GATC	5 cut(s)	44, 121, 304, 391, 487
Bst2UI	CCWGG	3 cut(s)	137, 206, 389
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	149, 621, 665
BstDEI	CTNAG	3 cut(s)	30, 190, 270
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	5 cut(s)	47, 124, 307, 394, 490
BstMBI	GATC	5 cut(s)	44, 121, 304, 391, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 218, 403, 616
BstNI	CCWGG	3 cut(s)	137, 206, 389
BstSCI	CCNGG	3 cut(s)	135, 204, 387
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	62, 220
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	304, 391
BstYI	RGATCY	2 cut(s)	304, 391
BsuRI	GGCC	3 cut(s)	63, 221, 729
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	429, 512
Cac8I	GCNNGC	3 cut(s)	149, 621, 665
CaiI	CAGNNNCTG	2 cut(s)	197, 394
Cfr10I	RCCGGY	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	219, 598
CviAII	CATG	1 cut(s)	469
DdeI	CTNAG	3 cut(s)	30, 190, 270
DpnI	GATC	5 cut(s)	46, 123, 306, 393, 489
DpnII	GATC	5 cut(s)	44, 121, 304, 391, 487
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	711
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	3 cut(s)	135, 204, 387
EcoRV	GATATC	1 cut(s)	13
FaeI	CATG	1 cut(s)	472
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	1 cut(s)	468
FauNDI	CATATG	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	51, 234
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	51, 234
GluI	GCNGC	2 cut(s)	51, 234
HaeIII	GGCC	3 cut(s)	63, 221, 729
HapII	CCGG	2 cut(s)	166, 664
Hin1II	CATG	1 cut(s)	472
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	554
HpaII	CCGG	2 cut(s)	166, 664
HphI	GGTGA	2 cut(s)	425, 658
Hpy166II	GTNNAC	2 cut(s)	86, 312
Hpy188I	TCNGA	5 cut(s)	10, 271, 369, 480, 691
Hpy188III	TCNNGA	6 cut(s)	197, 242, 376, 491, 532, 738
Hpy8I	GTNNAC	2 cut(s)	86, 312
HpyAV	CCTTC	3 cut(s)	123, 274, 404
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4V	TGCA	3 cut(s)	86, 545, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 218, 403, 616
HpyF3I	CTNAG	3 cut(s)	30, 190, 270
Hsp92II	CATG	1 cut(s)	472
KroI	GCCGGC	1 cut(s)	663
KroNI	GCCGGC	1 cut(s)	665
Kzo9I	GATC	5 cut(s)	44, 121, 304, 391, 487
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	2 cut(s)	62, 220
LweI	GCATC	3 cut(s)	94, 471, 588
MalI	GATC	5 cut(s)	46, 123, 306, 393, 489
MboI	GATC	5 cut(s)	44, 121, 304, 391, 487
MboII	GAAGA	5 cut(s)	105, 257, 260, 704, 722
MflI	RGATCY	2 cut(s)	304, 391
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	3 cut(s)	19, 349, 370
MmeI	TCCRAC	2 cut(s)	324, 651
MnlI	CCTC	6 cut(s)	25, 59, 133, 210, 516, 730
MroNI	GCCGGC	1 cut(s)	663
MroXI	GAANNNNTTC	2 cut(s)	252, 383
MseI	TTAA	4 cut(s)	263, 456, 501, 639
MspI	CCGG	2 cut(s)	166, 664
MspR9I	CCNGG	3 cut(s)	137, 206, 389
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	3 cut(s)	137, 206, 389
MwoI	GCNNNNNNNGC	4 cut(s)	47, 218, 403, 616
NaeI	GCCGGC	1 cut(s)	665
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	5 cut(s)	44, 121, 304, 391, 487
NgoMIV	GCCGGC	1 cut(s)	663
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	400
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	665
PdmI	GAANNNNTTC	2 cut(s)	252, 383
PfeI	GAWTC	1 cut(s)	554
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	52, 235
Psp6I	CCWGG	3 cut(s)	135, 204, 387
PspGI	CCWGG	3 cut(s)	135, 204, 387
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	219, 598
PstNI	CAGNNNCTG	2 cut(s)	197, 394
PsuI	RGATCY	2 cut(s)	304, 391
SaqAI	TTAA	4 cut(s)	263, 456, 501, 639
SatI	GCNGC	2 cut(s)	51, 234
Sau3AI	GATC	5 cut(s)	44, 121, 304, 391, 487
Sau96I	GGNCC	2 cut(s)	219, 598
ScrFI	CCNGG	3 cut(s)	137, 206, 389
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	3 cut(s)	94, 471, 588
SfcI	CTRYAG	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	400
SinI	GGWCC	1 cut(s)	598
Sse9I	AATT	3 cut(s)	19, 349, 370
SspI	AATATT	2 cut(s)	460, 528
StyD4I	CCNGG	3 cut(s)	135, 204, 387
TaaI	ACNGT	1 cut(s)	646
TaqI	TCGA	3 cut(s)	400, 486, 508
TasI	AATT	3 cut(s)	19, 349, 370
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	4 cut(s)	263, 456, 501, 639
Tru9I	TTAA	4 cut(s)	263, 456, 501, 639
TscAI	CASTG	2 cut(s)	429, 519
TseI	GCWGC	2 cut(s)	50, 233
TspDTI	ATGAA	3 cut(s)	457, 567, 665
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	429, 519
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	2 cut(s)	349, 370
XmnI	GAANNNNTTC	2 cut(s)	252, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.