Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Reverse (-)

26676461 .. 26676800

Gene Structure 340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0192400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAATACAGCTCATCTCCATCTGGGGAGTACATGCAGGGGCTTCATGCTCACACTGACAAATTATTAAGCACAGTCATTTGTGATGATCAAGTTTCAGGACTTGAATATCAAGCCAAGGATGGACAATGGATCAAGTTTTCTCTATCTCCTAACTCCTTTGTATATATTGTTGGAGATCCTCTTATGACCAAACGTGTATACAAGACCTTGAGTAGTCATGTGTTATTGTCCAATGTCCATGGTGGCTTGCAGGCATGGAGCAATGGGAGCATGCATCCAGTGAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

97

Amino Acids

10.75

Weight (kDa)

7.01

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	4 - 70	5.4e-09	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	140, 173
AfaI	GTAC	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
AlwI	GGATC	2 cut(s)	140, 173
BccI	CCATC	2 cut(s)	28, 116
BclI	TGATCA	1 cut(s)	88
BmsI	GCATC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	117, 241
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	117, 241
BseGI	GGATG	2 cut(s)	127, 277
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	88, 132, 178
Bsp19I	CCATGG	1 cut(s)	241
BspPI	GGATC	2 cut(s)	140, 173
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	117, 241
BssMI	GATC	3 cut(s)	88, 132, 178
BssNAI	GTATAC	1 cut(s)	202
BssT1I	CCWWGG	2 cut(s)	117, 241
Bst1107I	GTATAC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	3 cut(s)	251, 255, 275
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	127, 277
BstKTI	GATC	3 cut(s)	91, 135, 181
BstMBI	GATC	3 cut(s)	88, 132, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNSI	RCATGY	2 cut(s)	37, 277
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZ17I	GTATAC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	127, 277
BtsIMutI	CAGTG	2 cut(s)	54, 288
Cac8I	GCNNGC	3 cut(s)	251, 255, 275
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	6 cut(s)	34, 47, 221, 242, 258, 274
CviJI	RGCY	4 cut(s)	12, 43, 116, 249
CviKI_1	RGCY	4 cut(s)	12, 43, 116, 249
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	3 cut(s)	90, 134, 180
DpnII	GATC	3 cut(s)	88, 132, 178
Eco130I	CCWWGG	2 cut(s)	117, 241
EcoT14I	CCWWGG	2 cut(s)	117, 241
EcoT22I	ATGCAT	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	117, 241
FaeI	CATG	6 cut(s)	37, 50, 224, 245, 261, 277
FatI	CATG	6 cut(s)	33, 46, 220, 241, 257, 273
FbaI	TGATCA	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	201
FokI	GGATG	2 cut(s)	134, 264
Hin1II	CATG	6 cut(s)	37, 50, 224, 245, 261, 277
HinfI	GANTC	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	37, 253, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	6 cut(s)	37, 50, 224, 245, 261, 277
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	88, 132, 178
LmnI	GCTCC	2 cut(s)	261, 270
LpnPI	CCDG	4 cut(s)	9, 23, 84, 239
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	196
MalI	GATC	3 cut(s)	90, 134, 180
MboI	GATC	3 cut(s)	88, 132, 178
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	1 cut(s)	192
Mph1103I	ATGCAT	1 cut(s)	279
MseI	TTAA	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	88, 132, 178
NlaIII	CATG	6 cut(s)	37, 50, 224, 245, 261, 277
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	2 cut(s)	37, 277
PaeI	GCATGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	88, 132, 178
SetI	ASST	3 cut(s)	14, 199, 212
SfaNI	GCATC	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	117, 241
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	199
TasI	AATT	1 cut(s)	62
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	2 cut(s)	61, 288
TspDTI	ATGAA	2 cut(s)	17, 35
TspRI	CASTG	2 cut(s)	61, 288
XceI	RCATGY	2 cut(s)	37, 277
XmiI	GTMKAC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.