Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Forward (+)

22273799 .. 22277292

Gene Structure 3494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATGATAGAGGAGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAGAACGAGGAAGTGTTTATCATTCTTCTTCTGCTGAGGTTGTAGCTGGATCGGCAGCGTGGTTAGGCCGTGGCCTTTCCTGTGTTTGTGTTCAGGGTAGAGACGGTGACCCTCGTCCTTCATTTGATCTAACGCCTGCTCAGGAGGAATGCCTGCAGAGGTTGCAAAGCCGCATTGATGTTGCTTATGACAGCTCAATACCTCAGCATCAGGAAGCTCTAAAGGATCTTTGGAAACTTGCATTTCCTGAAGAAGAGCTACACGGAATTGTATCTGATCAGTGGAAGGAAATGGGTTGGCAGGGAAAAGATCCATCGACAGATTTTAGGGGTGGTGGTTTTATTTCTCTCGAAAACTTGTTGTACTTCGCTAGGAAATTCCCGAAATCTTTCCACGGCCTTCTGCGGAAACAGGTTGGCGATCGTTCTGTGTGGGAATACCCCTTTGCTGTTGCTGGCATCAATATAACATTCATGCTCATCCAGATGCTTGACCTTGAAGCAGTGAAACCACGAAGTATTGTTGGGGAAACATTTCTAAGATTCCTTTCGGTGAACGAGTCTGCGTTTGACCTTCTTTATTGCATTGCCTTCAAGCTAATGGATCAGCAATGGCTATCCATGCGTGCTTCATACATGGAGTTTAACACTGTGATGAAATCAACAAGGCGGCAACTGGAGAGAGAGATTATGATTGAAGACATTACAAGTCTCGAAGATTTGCCATCATACAGTCTTCTCAGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

266

Amino Acids

30.25

Weight (kDa)

5.25

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	49 - 214	2.7e-54	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	223, 457, 721
AclWI	GGATC	5 cut(s)	25, 109, 285, 356, 663
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	551, 646, 749
AluBI	AGCT	5 cut(s)	98, 246, 269, 310, 649
AluI	AGCT	5 cut(s)	98, 246, 269, 310, 649
Alw26I	GTCTC	2 cut(s)	147, 767
AlwI	GGATC	5 cut(s)	25, 109, 285, 356, 663
AoxI	GGCC	3 cut(s)	118, 124, 448
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	3 cut(s)	40, 440, 585
AsuHPI	GGTGA	2 cut(s)	170, 616
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbsI	GAAGAC	2 cut(s)	756, 779
BbvCI	CCTCAGC	2 cut(s)	87, 255
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	2 cut(s)	373, 784
BceAI	ACGGC	2 cut(s)	105, 463
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	147, 767
BfaI	CTAG	2 cut(s)	53, 423
BfmI	CTRYAG	1 cut(s)	206
BisI	GCNGC	3 cut(s)	108, 223, 722
BlsI	GCNGC	3 cut(s)	109, 224, 723
BmsI	GCATC	3 cut(s)	268, 519, 528
BoxI	GACNNNNGTC	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	756, 779
BpmI	CTGGAG	1 cut(s)	749
Bpu10I	CCTNAGC	3 cut(s)	87, 192, 255
BsaJI	CCNNGG	2 cut(s)	121, 445
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	2 cut(s)	636, 668
BseDI	CCNNGG	2 cut(s)	121, 445
BseGI	GGATG	2 cut(s)	10, 531
BseMI	GCAATG	2 cut(s)	636, 668
BseMII	CTCAG	3 cut(s)	78, 206, 269
BseNI	ACTGG	1 cut(s)	732
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	120, 126, 450
BsiEI	CGRYCG	1 cut(s)	475
BsmAI	GTCTC	2 cut(s)	147, 767
BsmBI	CGTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	120, 126, 450
Bsp143I	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
BspACI	CCGC	3 cut(s)	223, 457, 721
BspANI	GGCC	3 cut(s)	120, 126, 450
BspCNI	CTCAG	3 cut(s)	79, 205, 268
BspMAI	CTGCAG	1 cut(s)	210
BspPI	GGATC	5 cut(s)	25, 109, 285, 356, 663
BspQI	GCTCTTC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	636, 668
BsrI	ACTGG	1 cut(s)	732
BssECI	CCNNGG	2 cut(s)	121, 445
BssMI	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
Bst4CI	ACNGT	3 cut(s)	158, 703, 785
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	4 cut(s)	189, 206, 508, 678
BstDEI	CTNAG	5 cut(s)	87, 192, 255, 590, 791
BstDSI	CCRYGG	2 cut(s)	121, 445
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	10, 531
BstKTI	GATC	8 cut(s)	20, 104, 181, 280, 331, 364, 475, 658
BstMAI	GTCTC	2 cut(s)	147, 767
BstMBI	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 214, 673
BstPAI	GACNNNNGTC	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	2 cut(s)	756, 779
BstX2I	RGATCY	2 cut(s)	277, 361
BstYI	RGATCY	2 cut(s)	277, 361
BsuRI	GGCC	3 cut(s)	120, 126, 450
BtgI	CCRYGG	2 cut(s)	121, 445
BtsCI	GGATG	2 cut(s)	10, 531
BtsI	GCAGTG	2 cut(s)	36, 561
BtsIMutI	CAGTG	4 cut(s)	36, 338, 561, 699
Cac8I	GCNNGC	4 cut(s)	189, 206, 508, 678
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	3 cut(s)	526, 673, 688
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	5 cut(s)	87, 192, 255, 590, 791
DpnI	GATC	8 cut(s)	19, 103, 180, 279, 330, 363, 474, 657
DpnII	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	321
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	3 cut(s)	529, 676, 691
FaiI	YATR	8 cut(s)	240, 518, 527, 674, 685, 689, 743, 781
FatI	CATG	3 cut(s)	525, 672, 687
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	108, 223, 722
FokI	GGATG	2 cut(s)	17, 518
Fsp4HI	GCNGC	3 cut(s)	108, 223, 722
FspBI	CTAG	2 cut(s)	53, 423
GluI	GCNGC	3 cut(s)	108, 223, 722
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	3 cut(s)	120, 126, 450
Hin1II	CATG	3 cut(s)	529, 676, 691
HinfI	GANTC	2 cut(s)	594, 611
HphI	GGTGA	2 cut(s)	170, 616
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	8 cut(s)	53, 194, 263, 299, 401, 433, 535, 764
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	6 cut(s)	30, 180, 331, 461, 635, 652
HpyCH4III	ACNGT	3 cut(s)	158, 703, 785
HpyCH4V	TGCA	4 cut(s)	208, 217, 293, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 214, 673
HpyF3I	CTNAG	5 cut(s)	87, 192, 255, 590, 791
Hsp92II	CATG	3 cut(s)	529, 676, 691
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
LguI	GCTCTTC	1 cut(s)	300
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	3 cut(s)	268, 519, 528
MaeI	CTAG	2 cut(s)	53, 423
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	8 cut(s)	19, 103, 180, 279, 330, 363, 474, 657
MboI	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
MboII	GAAGA	7 cut(s)	69, 72, 314, 317, 761, 779, 779
MflI	RGATCY	2 cut(s)	277, 361
MluCI	AATT	2 cut(s)	318, 428
MlyI	GAGTC	1 cut(s)	620
MnlI	CCTC	8 cut(s)	5, 8, 53, 82, 174, 190, 204, 264
MroXI	GAANNNNTTC	3 cut(s)	40, 440, 585
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	536, 704
Mva1269I	GAATGC	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	104, 214, 673
NdeII	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
NlaIII	CATG	3 cut(s)	529, 676, 691
NmuCI	GTSAC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	206
PdmI	GAANNNNTTC	3 cut(s)	40, 440, 585
PfeI	GAWTC	1 cut(s)	594
PkrI	GCNGC	3 cut(s)	109, 224, 723
Ple19I	CGATCG	1 cut(s)	475
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PshAI	GACNNNNGTC	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	210
PsuI	RGATCY	2 cut(s)	277, 361
PvuI	CGATCG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	536, 704
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	3 cut(s)	108, 223, 722
Sau3AI	GATC	8 cut(s)	17, 101, 178, 277, 328, 361, 472, 655
SchI	GAGTC	1 cut(s)	620
SfaNI	GCATC	3 cut(s)	268, 519, 528
SfcI	CTRYAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	2 cut(s)	536, 704
Sse9I	AATT	2 cut(s)	318, 428
SsiI	CCGC	3 cut(s)	223, 457, 721
SspMI	CTAG	2 cut(s)	53, 423
TaaI	ACNGT	3 cut(s)	158, 703, 785
TaqI	TCGA	3 cut(s)	368, 402, 765
TasI	AATT	2 cut(s)	318, 428
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	225, 724
TfiI	GAWTC	1 cut(s)	594
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	4 cut(s)	36, 338, 561, 706
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	162, 514, 672, 722
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	4 cut(s)	36, 338, 561, 706
XapI	RAATTY	1 cut(s)	428
XbaI	TCTAGA	1 cut(s)	52
XmnI	GAANNNNTTC	3 cut(s)	40, 440, 585
XspI	CTAG	2 cut(s)	53, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.