Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Forward (+)

39925993 .. 39932001

Gene Structure 6009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG210100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGACGATAGAGGAGGCTCATTCGTGGCGGTGAGGAGGATTTCGCAAGGTCTCGATGGTCGTGGCAATACCTGCCATTCAAGTTCTGCTGAGGTTGTGGCAGGATCAGCAGCTTGGCTTGGCCGAGGACTTTCTTGTGTGTGTGCACAGAGAAGAGAGAGTGATGCTCGTCCTTCCTTTGATCTAACCCCTGCCCAGGAGGAATGCCTGCTGAAACTACAAAGCCGGATAGATGTTGCCTATGACAGCTCAGTCCCAGAGCACCAGGAAGCTTTGAGGGCCTTGTGGAGAGCTGCATTTCCGGAAGAAGAACTTCATGGTTTAATAACTGAACAATGGAAAGAAATGGGATGGCAAGGAAAGGATCCGTCAACAGATTTTAGGGGTGGTGGTTTTATATCATTGGAAAATTTGTTGTTCTTTGCTAGGAATTTCCCGAAATCTTTCCAGGATCTTCTTCGAAAGCAAGAAGGTGATAGGTCAGTGTGGGAATACCCATTTGCTGTTGCTGGTGTTAATATTACATTCATGCTTATTCAGATGCTCGATCTTGAAGCAGTTAAACCGCGAACACTGGTGGGAGCAATTTTCTTGAAGTTTCTTGCAGGTAACTTGTCTTTAACTAGGCTTATTATTGTGGTAATACTCAATATACTGATTTCCTTTGTTTTTCTTGACAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

228

Amino Acids

25.51

Weight (kDa)

5.98

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	72 - 187	4.9e-41	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc36I	ACCTGC	2 cut(s)	80, 596
AccII	CGCG	1 cut(s)	568
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	2 cut(s)	29, 566
AclWI	GGATC	4 cut(s)	112, 359, 372, 459
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	409, 430
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	81, 554, 595
AjnI	CCWGG	3 cut(s)	195, 264, 447
AluBI	AGCT	4 cut(s)	113, 249, 272, 293
AluI	AGCT	4 cut(s)	113, 249, 272, 293
Alw21I	GWGCWC	2 cut(s)	148, 264
Alw26I	GTCTC	1 cut(s)	56
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	4 cut(s)	112, 359, 372, 459
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	2 cut(s)	121, 279
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	110, 293
ApoI	RAATTY	2 cut(s)	409, 430
Asp700I	GAANNNNTTC	2 cut(s)	312, 443
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	43, 485
AsuII	TTCGAA	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	364
Bbv12I	GWGCWC	2 cut(s)	148, 264
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	122, 280
BccI	CCATC	2 cut(s)	50, 345
BciT130I	CCWGG	3 cut(s)	197, 266, 449
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	426, 624
BfuAI	ACCTGC	2 cut(s)	80, 596
BisI	GCNGC	2 cut(s)	111, 294
BlsI	GCNGC	2 cut(s)	112, 295
Bme1390I	CCNGG	3 cut(s)	197, 266, 449
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	3 cut(s)	197, 266, 449
BmsI	GCATC	2 cut(s)	154, 531
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	124, 195
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	301
BseBI	CCWGG	3 cut(s)	197, 266, 449
BseDI	CCNNGG	2 cut(s)	124, 195
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	81, 264
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	2 cut(s)	27, 49
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	122, 280
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	123, 281
BsiHKAI	GWGCWC	2 cut(s)	148, 264
BsiSI	CCGG	2 cut(s)	226, 302
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	123, 281
Bso31I	GGTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	148, 264
Bsp13I	TCCGGA	1 cut(s)	301
Bsp143I	GATC	5 cut(s)	104, 181, 364, 451, 547
BspACI	CCGC	2 cut(s)	29, 566
BspANI	GGCC	2 cut(s)	123, 281
BspCNI	CTCAG	2 cut(s)	82, 263
BspEI	TCCGGA	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	366
BspMI	ACCTGC	2 cut(s)	80, 596
BspPI	GGATC	4 cut(s)	112, 359, 372, 459
BspT104I	TTCGAA	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	124, 195
BssMI	GATC	5 cut(s)	104, 181, 364, 451, 547
Bst2UI	CCWGG	3 cut(s)	197, 266, 449
Bst6I	CTCTTC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	90, 250
BstF5I	GGATG	1 cut(s)	356
BstFNI	CGCG	1 cut(s)	568
BstKTI	GATC	5 cut(s)	107, 184, 367, 454, 550
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	5 cut(s)	104, 181, 364, 451, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 107, 278
BstNI	CCWGG	3 cut(s)	197, 266, 449
BstSCI	CCNGG	3 cut(s)	195, 264, 447
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	122, 280
BstX2I	RGATCY	2 cut(s)	364, 451
BstYI	RGATCY	2 cut(s)	364, 451
BsuRI	GGCC	2 cut(s)	123, 281
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	489, 572
BveI	ACCTGC	2 cut(s)	80, 596
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	279
CviAII	CATG	2 cut(s)	317, 529
DdeI	CTNAG	2 cut(s)	90, 250
DpnI	GATC	5 cut(s)	106, 183, 366, 453, 549
DpnII	GATC	5 cut(s)	104, 181, 364, 451, 547
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	3 cut(s)	195, 264, 447
FaeI	CATG	2 cut(s)	320, 532
FaiI	YATR	5 cut(s)	243, 318, 398, 530, 653
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	316, 528
Fnu4HI	GCNGC	2 cut(s)	111, 294
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	111, 294
FspBI	CTAG	2 cut(s)	426, 624
GluI	GCNGC	2 cut(s)	111, 294
HaeIII	GGCC	2 cut(s)	123, 281
HapII	CCGG	2 cut(s)	226, 302
Hin1II	CATG	2 cut(s)	320, 532
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	270
HpaII	CCGG	2 cut(s)	226, 302
HphI	GGTGA	2 cut(s)	43, 485
Hpy166II	GTNNAC	2 cut(s)	146, 372
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	6 cut(s)	53, 302, 436, 551, 592, 674
Hpy8I	GTNNAC	2 cut(s)	146, 372
HpyAV	CCTTC	2 cut(s)	183, 464
HpyCH4V	TGCA	3 cut(s)	146, 296, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 107, 278
HpyF3I	CTNAG	2 cut(s)	90, 250
Hsp92II	CATG	2 cut(s)	320, 532
Kpn2I	TCCGGA	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	104, 181, 364, 451, 547
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	2 cut(s)	122, 280
LweI	GCATC	2 cut(s)	154, 531
MaeI	CTAG	2 cut(s)	426, 624
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	5 cut(s)	106, 183, 366, 453, 549
MboI	GATC	5 cut(s)	104, 181, 364, 451, 547
MboII	GAAGA	5 cut(s)	165, 317, 320, 446, 449
MflI	RGATCY	2 cut(s)	364, 451
MhlI	GDGCHC	2 cut(s)	148, 264
MluCI	AATT	3 cut(s)	409, 430, 585
MnlI	CCTC	8 cut(s)	5, 8, 27, 30, 85, 119, 193, 270
MroI	TCCGGA	1 cut(s)	301
MroXI	GAANNNNTTC	2 cut(s)	312, 443
MseI	TTAA	4 cut(s)	323, 516, 561, 620
MspI	CCGG	2 cut(s)	226, 302
MspR9I	CCNGG	3 cut(s)	197, 266, 449
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	3 cut(s)	197, 266, 449
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	3 cut(s)	72, 107, 278
NdeII	GATC	5 cut(s)	104, 181, 364, 451, 547
NlaIII	CATG	2 cut(s)	320, 532
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	460
PctI	GAATGC	1 cut(s)	209
PdmI	GAANNNNTTC	2 cut(s)	312, 443
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	2 cut(s)	112, 295
Psp6I	CCWGG	3 cut(s)	195, 264, 447
PspGI	CCWGG	3 cut(s)	195, 264, 447
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	2 cut(s)	364, 451
SaqAI	TTAA	4 cut(s)	323, 516, 561, 620
SatI	GCNGC	2 cut(s)	111, 294
Sau3AI	GATC	5 cut(s)	104, 181, 364, 451, 547
Sau96I	GGNCC	1 cut(s)	279
ScrFI	CCNGG	3 cut(s)	197, 266, 449
SduI	GDGCHC	2 cut(s)	148, 264
SfaNI	GCATC	2 cut(s)	154, 531
SfuI	TTCGAA	1 cut(s)	460
Sse9I	AATT	3 cut(s)	409, 430, 585
SsiI	CCGC	2 cut(s)	29, 566
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	426, 624
StyD4I	CCNGG	3 cut(s)	195, 264, 447
TaqI	TCGA	3 cut(s)	54, 460, 546
TasI	AATT	3 cut(s)	409, 430, 585
Tru1I	TTAA	4 cut(s)	323, 516, 561, 620
Tru9I	TTAA	4 cut(s)	323, 516, 561, 620
TscAI	CASTG	2 cut(s)	489, 579
TseI	GCWGC	2 cut(s)	110, 293
TspDTI	ATGAA	2 cut(s)	305, 517
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	489, 579
VneI	GTGCAC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	409, 430
XmnI	GAANNNNTTC	2 cut(s)	312, 443
XspI	CTAG	2 cut(s)	426, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.