Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Reverse (-)

21698096 .. 21703146

Gene Structure 5051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1102900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTACCATTGACGATAGAGGAGGAGGCTCATTCGTCGCCGTTCGGAGGATTTCTCAAGGTCTCGACCGCGGCGGCAACACCTGCCAATCAACTTCTGCTGAAGTTGTAGCAGGATCAACAGCATGGCTCGGCCGGGGTCTTTCTTGTGTGTGTGCACAGAGAAGAGAGAGTGATGCTCGTCCCTCCTTTGATTTAACCACTGTCCAGGAGGAATGCCTGATTAGGCTACAGAGCCGTATAGATGTTTCCTACGACAGTTCAATTCCTGAGCATCAGGAAGCTTTGAGGGCCTTGTGGAATGCTTCCTTTCCTGAAGAAGAACTTCGTGGTTTAATATCTGATCAATGGAAGGAAATGGGTTGGCAAGGGAAAGATCCATCTACAGATTTCAGGGGTGGTGGTTTTATTTCATTGGAGAATTTGTTGTACTTTGCTAGGACTTTCCCGAAATCTTTCCAGGATCTTCTTCGAAAGCAAGAAGGTGATAGGTCTGTGTGGGAATACCCATTTGCTGTTGCTGGTGTGAATATCACATTCATGCTCATTCAAATGCTCGATCTTGAAGCCGTCAAACCACGAACAATGGTGGGAGCTACTTTCTTGAAGTTTCTAGCAGAAAATGAATCCGCGTTCGATCTTATCTATTGCATCACATTCAAGCTAATGGATCATCAGTGGCTTTCTATGCGTGCATCCTATATGGATTTTAATACAGTGATGAAGTCCACACGCCGGCAGTTGGAAAAAGAACTAGTGCTTGAAGACGTAACACGGCTGGAAGACTTGCCTTCATATAGCCTTCTTTCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

272

Amino Acids

30.78

Weight (kDa)

5.0

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	77 - 241	4.2e-55	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AccII	CGCG	2 cut(s)	72, 632
AciI	CCGC	4 cut(s)	70, 72, 75, 630
AclWI	GGATC	4 cut(s)	124, 371, 471, 678
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	123, 336
AfaI	GTAC	2 cut(s)	7, 431
AfiI	CCNNNNNNNGG	3 cut(s)	48, 735, 742
AgsI	TTSAA	6 cut(s)	264, 551, 566, 607, 661, 764
AhlI	ACTAGT	1 cut(s)	754
AjnI	CCWGG	2 cut(s)	207, 459
AluBI	AGCT	3 cut(s)	284, 596, 664
AluI	AGCT	3 cut(s)	284, 596, 664
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	4 cut(s)	124, 371, 471, 678
AoxI	GGCC	2 cut(s)	133, 291
ApaLI	GTGCAC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	421
Asp700I	GAANNNNTTC	2 cut(s)	324, 455
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	497
AsuII	TTCGAA	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	160
BbsI	GAAGAC	2 cut(s)	771, 789
Bbv12I	GWGCWC	1 cut(s)	160
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	4 cut(s)	26, 222, 554, 791
BciT130I	CCWGG	2 cut(s)	209, 461
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	68
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	3 cut(s)	438, 614, 755
BfmI	CTRYAG	2 cut(s)	230, 384
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	2 cut(s)	73, 76
BlsI	GCNGC	2 cut(s)	74, 77
Bme1390I	CCNGG	3 cut(s)	137, 209, 461
BmgT120I	GGNCC	1 cut(s)	291
BmrFI	CCNGG	3 cut(s)	137, 209, 461
BmsI	GCATC	4 cut(s)	166, 283, 660, 704
BpiI	GAAGAC	2 cut(s)	771, 789
BplI	GAGNNNNNCTC	4 cut(s)	40, 72, 163, 195
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	70, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 735, 742
Bse118I	RCCGGY	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	209, 461
BseDI	CCNNGG	2 cut(s)	70, 136
BseGI	GGATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	3 cut(s)	48, 735, 742
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	2 cut(s)	36, 39
BseSI	GKGCMC	1 cut(s)	160
BseX3I	CGGCCG	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	72, 632
Bsh1285I	CGRYCG	2 cut(s)	70, 136
BshFI	GGCC	2 cut(s)	135, 293
BsiEI	CGRYCG	2 cut(s)	70, 136
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	136, 736
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	3 cut(s)	48, 735, 742
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	168
BsmI	GAATGC	2 cut(s)	221, 307
BsnI	GGCC	2 cut(s)	135, 293
Bso31I	GGTCTC	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
BspACI	CCGC	4 cut(s)	70, 72, 75, 630
BspANI	GGCC	2 cut(s)	135, 293
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	72, 632
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	4 cut(s)	124, 371, 471, 678
BspT104I	TTCGAA	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	735
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	2 cut(s)	70, 136
BssMI	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
Bst2UI	CCWGG	2 cut(s)	209, 461
Bst4CI	ACNGT	3 cut(s)	205, 260, 718
Bst6I	CTCTTC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	693, 737
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	695
BstFNI	CGCG	2 cut(s)	72, 632
BstKTI	GATC	7 cut(s)	119, 346, 379, 466, 562, 640, 673
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
BstMCI	CGRYCG	2 cut(s)	70, 136
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 290, 688
BstNI	CCWGG	2 cut(s)	209, 461
BstSCI	CCNGG	3 cut(s)	135, 207, 459
BstSFI	CTRYAG	2 cut(s)	230, 384
BstSLI	GKGCMC	1 cut(s)	160
BstUI	CGCG	2 cut(s)	72, 632
BstV2I	GAAGAC	2 cut(s)	771, 789
BstX2I	RGATCY	2 cut(s)	376, 463
BstYI	RGATCY	2 cut(s)	376, 463
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	135, 293
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	695
BtsIMutI	CAGTG	3 cut(s)	201, 683, 723
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	693, 737
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	1 cut(s)	291
Cfr42I	CCGCGG	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	6, 430
CviAII	CATG	2 cut(s)	126, 541
CviQI	GTAC	2 cut(s)	6, 430
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	7 cut(s)	118, 345, 378, 465, 561, 639, 672
DpnII	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	68
Eco52I	CGGCCG	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	123, 336
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	207, 459
FaeI	CATG	2 cut(s)	129, 544
FaiI	YATR	8 cut(s)	127, 242, 542, 689, 702, 704, 796, 798
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	2 cut(s)	125, 540
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	73, 76
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	2 cut(s)	73, 76
FspBI	CTAG	3 cut(s)	438, 614, 755
GluI	GCNGC	2 cut(s)	73, 76
HaeIII	GGCC	2 cut(s)	135, 293
HapII	CCGG	2 cut(s)	136, 736
Hin1II	CATG	2 cut(s)	129, 544
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	1 cut(s)	626
HpaII	CCGG	2 cut(s)	136, 736
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	158, 729
Hpy188I	TCNGA	2 cut(s)	48, 343
Hpy188III	TCNNGA	7 cut(s)	65, 269, 278, 314, 448, 563, 604
Hpy8I	GTNNAC	2 cut(s)	158, 729
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	346, 476, 801, 812
HpyCH4III	ACNGT	3 cut(s)	205, 260, 718
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	3 cut(s)	158, 651, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 290, 688
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	2 cut(s)	129, 544
KroI	GCCGGC	1 cut(s)	735
KroNI	GCCGGC	1 cut(s)	737
Ksp22I	TGATCA	1 cut(s)	343
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
LmnI	GCTCC	1 cut(s)	593
LweI	GCATC	4 cut(s)	166, 283, 660, 704
MaeI	CTAG	3 cut(s)	438, 614, 755
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	1 cut(s)	769
MalI	GATC	7 cut(s)	118, 345, 378, 465, 561, 639, 672
MboI	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
MboII	GAAGA	7 cut(s)	177, 329, 332, 458, 461, 776, 794
MflI	RGATCY	2 cut(s)	376, 463
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	264, 421
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	7 cut(s)	14, 17, 20, 42, 196, 205, 282
MroNI	GCCGGC	1 cut(s)	735
MroXI	GAANNNNTTC	2 cut(s)	324, 455
MseI	TTAA	3 cut(s)	197, 335, 711
MslI	CAYNNNNRTG	2 cut(s)	539, 551
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	2 cut(s)	136, 736
MspR9I	CCNGG	3 cut(s)	137, 209, 461
Mva1269I	GAATGC	2 cut(s)	221, 307
MvaI	CCWGG	2 cut(s)	209, 461
MvnI	CGCG	2 cut(s)	72, 632
MwoI	GCNNNNNNNGC	3 cut(s)	84, 290, 688
NaeI	GCCGGC	1 cut(s)	737
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
NgoMIV	GCCGGC	1 cut(s)	735
NlaIII	CATG	2 cut(s)	129, 544
NmeAIII	GCCGAG	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	472
PaqCI	CACCTGC	1 cut(s)	92
PctI	GAATGC	2 cut(s)	221, 307
PdiI	GCCGGC	1 cut(s)	737
PdmI	GAANNNNTTC	2 cut(s)	324, 455
PfeI	GAWTC	1 cut(s)	626
PfoI	TCCNGGA	2 cut(s)	207, 459
PkrI	GCNGC	2 cut(s)	74, 77
Psp6I	CCWGG	2 cut(s)	207, 459
PspGI	CCWGG	2 cut(s)	207, 459
PspPI	GGNCC	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	376, 463
RsaI	GTAC	2 cut(s)	7, 431
RsaNI	GTAC	2 cut(s)	6, 430
RseI	CAYNNNNRTG	2 cut(s)	539, 551
SacII	CCGCGG	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	197, 335, 711
SatI	GCNGC	2 cut(s)	73, 76
Sau3AI	GATC	7 cut(s)	116, 343, 376, 463, 559, 637, 670
Sau96I	GGNCC	1 cut(s)	291
ScrFI	CCNGG	3 cut(s)	137, 209, 461
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	8 cut(s)	64, 86, 286, 487, 494, 598, 666, 771
SfaNI	GCATC	4 cut(s)	166, 283, 660, 704
SfcI	CTRYAG	2 cut(s)	230, 384
Sfr303I	CCGCGG	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	472
SgrBI	CCGCGG	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	539, 551
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	2 cut(s)	264, 421
SsiI	CCGC	4 cut(s)	70, 72, 75, 630
SspMI	CTAG	3 cut(s)	438, 614, 755
StyD4I	CCNGG	3 cut(s)	135, 207, 459
TaaI	ACNGT	3 cut(s)	205, 260, 718
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	4 cut(s)	66, 472, 558, 636
TasI	AATT	2 cut(s)	264, 421
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	2 cut(s)	75, 78
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	3 cut(s)	197, 335, 711
Tru9I	TTAA	3 cut(s)	197, 335, 711
TscAI	CASTG	3 cut(s)	208, 683, 723
TspDTI	ATGAA	5 cut(s)	402, 529, 639, 737, 783
TspRI	CASTG	3 cut(s)	208, 683, 723
VneI	GTGCAC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	421
XmnI	GAANNNNTTC	2 cut(s)	324, 455
XspI	CTAG	3 cut(s)	438, 614, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.