Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Forward (+)

18524311 .. 18526827

Gene Structure 2517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTAATTCTCAGCAACGTCTCGTTGTTCTCCTGCTGCAACATCTCTCAGAAACCATCTCTCTTTTCTCCGTCTTCTCGTAGTTCTCATTGTCCCATTCGTTGCTCACAGTCACAGGAAGGGAAAGAAGTGGTTACCAGTCCTTTGAGAAGTGTGGTTTGGTCATTAGGAGAAGAGGTTTCAAAGAGAAGTCTATTTGCACTTGTCTCTGCTTCTCTCTTCTTTGTTGATCCTGCTCTTGCTTTTAAGGGTGGAGGTCCCTATGGTCAAGGAGTCACCAGGGGACAGGACTTATCTGGCAAAGATTTCAGTGGCCAGACTCTTATCAGGCAGGACTTCAAAACGTCCATCCTAAGGCAAGCCAACTTCAAGGGTGCAAAGTTGTTAGGTGCTAGCTTCTTTGATGCAGATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTCCTTGGCAAATGTAACAAAGGTGAATCTAACGAACGCTAACTTAGAAGGAGCGACTGTTACTGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAGGTGAAAAAAGAAAAGAAAACTTTCATAATAACAATAAGCACATCTCTTTATTACCTCTGAGCTTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

210

Amino Acids

22.43

Weight (kDa)

9.14

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_4	PF13599	112 - 173	4.3e-08	Pentapeptide repeat region
Pentapeptide	PF00805	116 - 154	1e-11	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	131 - 170	9.3e-12	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	551
AclWI	GGATC	2 cut(s)	224, 550
AcoI	YGGCCR	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	4 cut(s)	183, 340, 370, 538
AjnI	CCWGG	1 cut(s)	278
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	3 cut(s)	396, 437, 624
AluI	AGCT	3 cut(s)	396, 437, 624
Alw26I	GTCTC	2 cut(s)	25, 211
AlwI	GGATC	2 cut(s)	224, 550
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	268, 493, 575
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	64, 356
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	25, 211
BfaI	CTAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	394
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	279, 445, 462
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	138, 526
Bse21I	CCTNAGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	279, 445, 462
BseGI	GGATG	1 cut(s)	348
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	25, 62, 611
BseNI	ACTGG	2 cut(s)	138, 526
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	315
BslFI	GGGAC	3 cut(s)	78, 243, 297
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	25, 211
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	3 cut(s)	78, 243, 297
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	229, 409, 439, 542
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	3 cut(s)	24, 61, 612
BspLI	GGNNCC	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	551
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	224, 550
BsrI	ACTGG	2 cut(s)	138, 526
BssECI	CCNNGG	3 cut(s)	279, 445, 462
BssMI	GATC	4 cut(s)	229, 409, 439, 542
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	111, 517
Bst6I	CTCTTC	2 cut(s)	168, 224
BstC8I	GCNNGC	2 cut(s)	360, 394
BstDEI	CTNAG	5 cut(s)	11, 48, 353, 502, 620
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	4 cut(s)	232, 412, 442, 545
BstMAI	GTCTC	2 cut(s)	25, 211
BstMBI	GATC	4 cut(s)	229, 409, 439, 542
BstNI	CCWGG	1 cut(s)	280
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	2 cut(s)	360, 394
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	257
CviJI	RGCY	5 cut(s)	315, 362, 396, 437, 624
CviKI_1	RGCY	5 cut(s)	315, 362, 396, 437, 624
DdeI	CTNAG	5 cut(s)	11, 48, 353, 502, 620
DpnI	GATC	4 cut(s)	231, 411, 441, 544
DpnII	GATC	4 cut(s)	229, 409, 439, 542
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	168, 224
EarI	CTCTTC	2 cut(s)	168, 224
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	25
FaiI	YATR	3 cut(s)	264, 588, 631
FaqI	GGGAC	3 cut(s)	78, 243, 297
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	315
HhaI	GCGC	1 cut(s)	560
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HinfI	GANTC	3 cut(s)	273, 319, 484
HphI	GGTGA	3 cut(s)	268, 493, 575
Hpy188I	TCNGA	4 cut(s)	51, 433, 446, 621
HpyAV	CCTTC	2 cut(s)	113, 500
HpyCH4III	ACNGT	2 cut(s)	111, 517
HpyCH4IV	ACGT	2 cut(s)	18, 344
HpyCH4V	TGCA	5 cut(s)	39, 200, 377, 407, 452
HpyF3I	CTNAG	5 cut(s)	11, 48, 353, 502, 620
HpySE526I	ACGT	2 cut(s)	18, 344
HspAI	GCGC	1 cut(s)	558
Kzo9I	GATC	4 cut(s)	229, 409, 439, 542
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	18, 344
MaeIII	GTNAC	5 cut(s)	111, 133, 274, 472, 517
MalI	GATC	4 cut(s)	231, 411, 441, 544
MboI	GATC	4 cut(s)	229, 409, 439, 542
MboII	GAAGA	3 cut(s)	66, 185, 211
MflI	RGATCY	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	1 cut(s)	6
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	282, 313
MnlI	CCTC	4 cut(s)	169, 248, 440, 627
Mox20I	TGGCCA	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
NdeII	GATC	4 cut(s)	229, 409, 439, 542
NheI	GCTAGC	1 cut(s)	392
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	111, 274
PaqCI	CACCTGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	1 cut(s)	38
PleI	GAGTC	2 cut(s)	281, 313
PpsI	GAGTC	2 cut(s)	281, 313
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	278
PspEI	GGTNACC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	4 cut(s)	229, 409, 439, 542
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	2 cut(s)	282, 313
ScrFI	CCNGG	1 cut(s)	280
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	6
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	111, 517
TaiI	ACGT	2 cut(s)	21, 347
TasI	AATT	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	111, 274
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	2 cut(s)	111, 274
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.