Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Forward (+)

60005149 .. 60008421

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG325400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGCTTCTCAACGTCTCCATGTGCTCCAAAATCCCAAACCCTTCCCGCCAACACCTCTCTCTCTCCGGCTATCCTCCGCCCCAGTTACTCAAGACTCAATCCGAAGCTTCCAGAAACCTTGCGCTGCAAATCGGAGAATCCGTCTGCAAGGCCAGCCTGATCGCCGCGCTCTCTGCTTCTCTGTTCGCGGCCGACCCTGCGCTCGCCTATATCGGTGGGGGTCCGTACGGTTCAGAGGTGACTAGGGGGCAGGACCTTACCGGGAAGGACTTCAGCGGCTTGACTTTGGTCAAGCAAGACTTCAAAACGTCCATATTGAGGCAGGCGAATTTTCATGCCGCAAAGTTGTTAGGAGCTAGCTTTTTTGATGCTGATTTAACAGGGGCTGATCTTTCTGATGCTGATCTAAGAGGTGCAGACTTTTCCTTGGCCAATGTGACAAAGGTAAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGCAACACATCTTTCAAAGGATCAACTATCACAGGTGCAGGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

178

Amino Acids

18.46

Weight (kDa)

6.71

Isoelectric Point (pI)

19.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_4	PF13599	101 - 173	4.2e-08	Pentapeptide repeat region
Pentapeptide	PF00805	105 - 143	1.1e-10	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	120 - 159	2.6e-11	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccII	CGCG	2 cut(s)	170, 191
AciI	CCGC	6 cut(s)	49, 80, 168, 191, 279, 342
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	2 cut(s)	192, 432
AcsI	RAATTY	2 cut(s)	331, 451
AcuI	CTGAAG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	307, 505
AluBI	AGCT	3 cut(s)	110, 359, 363
AluI	AGCT	3 cut(s)	110, 359, 363
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	517
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	153, 192, 432
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	331, 451
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	4 cut(s)	7, 127, 172, 205
AspS9I	GGNCC	2 cut(s)	224, 256
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	224, 256
BalI	TGGCCA	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	246, 360
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
BlsI	GCNGC	5 cut(s)	129, 169, 193, 281, 343
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	2 cut(s)	224, 256
BmgT120I	GGNCC	2 cut(s)	224, 256
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	361, 391
BmtI	GCTAGC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	1 cut(s)	466
BseNI	ACTGG	1 cut(s)	85
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	170, 191
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	155, 194, 434
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	69, 264
BsiWI	CGTACG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	155, 194, 434
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	162, 391, 406, 509
BspACI	CCGC	6 cut(s)	49, 80, 168, 191, 279, 342
BspANI	GGCC	3 cut(s)	155, 194, 434
BspFNI	CGCG	2 cut(s)	170, 191
BspLI	GGNNCC	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	162, 391, 406, 509
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	233
BstC8I	GCNNGC	4 cut(s)	157, 207, 327, 361
BstDEI	CTNAG	1 cut(s)	410
BstFNI	CGCG	2 cut(s)	170, 191
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	4 cut(s)	7, 127, 172, 205
BstKTI	GATC	4 cut(s)	165, 394, 409, 512
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	162, 391, 406, 509
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 176, 200
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	2 cut(s)	170, 191
BstV1I	GCAGC	1 cut(s)	114
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	155, 194, 434
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	4 cut(s)	157, 207, 327, 361
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	4 cut(s)	7, 127, 172, 205
Cfr13I	GGNCC	2 cut(s)	224, 256
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	2 cut(s)	22, 338
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	4 cut(s)	164, 393, 408, 511
DpnII	GATC	4 cut(s)	162, 391, 406, 509
EaeI	YGGCCR	2 cut(s)	192, 432
EagI	CGGCCG	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	69
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	224, 256
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	25, 341
FaiI	YATR	5 cut(s)	23, 213, 317, 339, 533
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	2 cut(s)	21, 337
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
Fsp4HI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
FspBI	CTAG	2 cut(s)	246, 360
GlaI	GCGC	4 cut(s)	6, 126, 171, 204
GluI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	155, 194, 434
HapII	CCGG	2 cut(s)	69, 264
HhaI	GCGC	4 cut(s)	7, 127, 172, 205
Hin1II	CATG	2 cut(s)	25, 341
Hin6I	GCGC	4 cut(s)	5, 125, 170, 203
HinP1I	GCGC	4 cut(s)	5, 125, 170, 203
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	97, 140
HpaII	CCGG	2 cut(s)	69, 264
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	4 cut(s)	106, 137, 238, 400
Hpy188III	TCNNGA	2 cut(s)	94, 114
HpyAV	CCTTC	3 cut(s)	54, 262, 467
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	15, 311
HpyCH4V	TGCA	5 cut(s)	130, 150, 419, 479, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 176, 200
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	15, 311
Hsp92II	CATG	2 cut(s)	25, 341
HspAI	GCGC	4 cut(s)	5, 125, 170, 203
Kzo9I	GATC	4 cut(s)	162, 391, 406, 509
LmnI	GCTCC	2 cut(s)	32, 356
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	361, 391
MaeI	CTAG	2 cut(s)	246, 360
MaeII	ACGT	2 cut(s)	15, 311
MaeIII	GTNAC	3 cut(s)	87, 241, 439
MalI	GATC	4 cut(s)	164, 393, 408, 511
MboI	GATC	4 cut(s)	162, 391, 406, 509
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	2 cut(s)	331, 451
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	5 cut(s)	68, 87, 232, 315, 407
Mox20I	TGGCCA	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	2 cut(s)	69, 264
MspR9I	CCNGG	1 cut(s)	265
MvnI	CGCG	2 cut(s)	170, 191
MwoI	GCNNNNNNNGC	3 cut(s)	156, 176, 200
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	4 cut(s)	162, 391, 406, 509
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	25, 341
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	241, 439
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	140
Pfl23II	CGTACG	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	129, 169, 193, 281, 343
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	256
PspLI	CGTACG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	224, 256
PspPPI	RGGWCCY	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
Sau3AI	GATC	4 cut(s)	162, 391, 406, 509
Sau96I	GGNCC	2 cut(s)	224, 256
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	361, 391
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	2 cut(s)	224, 256
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	331, 451
SsiI	CCGC	6 cut(s)	49, 80, 168, 191, 279, 342
SspMI	CTAG	2 cut(s)	246, 360
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	2 cut(s)	18, 314
TasI	AATT	2 cut(s)	331, 451
TauI	GCSGC	4 cut(s)	170, 194, 282, 344
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TseFI	GTSAC	2 cut(s)	241, 439
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	241, 439
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	2 cut(s)	133, 216
VpaK11BI	GGWCC	2 cut(s)	224, 256
XapI	RAATTY	2 cut(s)	331, 451
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	2 cut(s)	246, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.