Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Reverse (-)

9420194 .. 9422927

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGCTTCTCAACGTCTCCATGTGCTCCAAAATCCCAAACCCTTCCCGCCAACACCTCTCCCTCTCCGGCTATCCCCCGCCCCAGGTACTCAAGACTCAATCCGAAGCTTCCAGAAACCTTGCGCTGCAAATCGGAGAATCCGTCTGCAAGGCCAGCCTGATCGCCGCGCTCTCTGCTTCTCTGTTCGCGGCCAACCCTGCGCTCGCCTATATCGGTGGAGGTCCGTACGGTTCAGAGGTGACTAGGGGGCAGGACCTTACCGGGAAGGACTTCAGCGGCTTGACTTTGGTCAAGCAAGACTTCAAAACGTCCATATTGAGGCAGGCGAATTTTCATGCCGCAAAGTTGTTAGGAGCTAGCTTTTTTGATGCTGATTTAACAGGGGCTGATCTTTCTGATGCTGATCTAAGAGGTGCAGACTTTTCCTTGGCCAATGTGACAAAGGTAAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGCAACACATCTTTCAAAGGATCAACTATCACAGGTGCAGACTTCACAGACGTTCCTTTGAGAGATGATCAGCGGGAATATCTTTGCAAAATTGCTGATGGGGTAAATCCAACAACCGGAAATGAAACACGTGAAACCTTGTTTTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

213

Amino Acids

22.5

Weight (kDa)

5.68

Isoelectric Point (pI)

17.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_4	PF13599	101 - 178	1.4e-08	Pentapeptide repeat region
Pentapeptide	PF00805	105 - 143	1.5e-10	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	120 - 159	3.7e-11	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	170, 191
AciI	CCGC	7 cut(s)	49, 80, 168, 191, 279, 342, 562
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	2 cut(s)	192, 432
AcsI	RAATTY	2 cut(s)	331, 451
AcuI	CTGAAG	1 cut(s)	259
AcvI	CACGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	90, 230
AfiI	CCNNNNNNNGG	3 cut(s)	85, 321, 605
AflIII	ACRYGT	1 cut(s)	617
AgsI	TTSAA	2 cut(s)	307, 505
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	110, 359, 363
AluI	AGCT	3 cut(s)	110, 359, 363
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	517
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	153, 192, 432
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	331, 451
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	4 cut(s)	7, 127, 172, 205
AspS9I	GGNCC	2 cut(s)	224, 256
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	224, 256
BalI	TGGCCA	1 cut(s)	434
BbrPI	CACGTG	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	86
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	246, 360
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
BlsI	GCNGC	5 cut(s)	129, 169, 193, 281, 343
Bme1390I	CCNGG	2 cut(s)	86, 265
Bme18I	GGWCC	2 cut(s)	224, 256
BmgT120I	GGNCC	2 cut(s)	224, 256
BmrFI	CCNGG	2 cut(s)	86, 265
BmsI	GCATC	2 cut(s)	361, 391
BmtI	GCTAGC	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	265
BsaAI	YACGTR	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	84, 429
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 321, 605
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	84, 429
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	85, 321, 605
BseMI	GCAATG	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	2 cut(s)	438, 546
Bsh1236I	CGCG	2 cut(s)	170, 191
BshFI	GGCC	3 cut(s)	155, 194, 434
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	69, 264, 606
BsiWI	CGTACG	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	85, 321, 605
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	155, 194, 434
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	162, 391, 406, 509, 556
BspACI	CCGC	7 cut(s)	49, 80, 168, 191, 279, 342, 562
BspANI	GGCC	3 cut(s)	155, 194, 434
BspFNI	CGCG	2 cut(s)	170, 191
BspOI	GCTAGC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	84, 429
BssMI	GATC	5 cut(s)	162, 391, 406, 509, 556
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	157, 207, 327, 361
BstDEI	CTNAG	1 cut(s)	410
BstFNI	CGCG	2 cut(s)	170, 191
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	4 cut(s)	7, 127, 172, 205
BstKTI	GATC	5 cut(s)	165, 394, 409, 512, 559
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	5 cut(s)	162, 391, 406, 509, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 176, 200
BstNI	CCWGG	1 cut(s)	86
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	84, 263
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	2 cut(s)	170, 191
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	155, 194, 434
Cac8I	GCNNGC	4 cut(s)	157, 207, 327, 361
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	4 cut(s)	7, 127, 172, 205
Cfr13I	GGNCC	2 cut(s)	224, 256
Csp6I	GTAC	2 cut(s)	89, 229
CviAII	CATG	2 cut(s)	22, 338
CviQI	GTAC	2 cut(s)	89, 229
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	5 cut(s)	164, 393, 408, 511, 558
DpnII	GATC	5 cut(s)	162, 391, 406, 509, 556
EaeI	YGGCCR	2 cut(s)	192, 432
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	224, 256
Eco57I	CTGAAG	1 cut(s)	259
Eco72I	CACGTG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	25, 341
FaiI	YATR	4 cut(s)	23, 213, 317, 339
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	2 cut(s)	21, 337
FauI	CCCGC	3 cut(s)	56, 87, 555
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
Fsp4HI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
FspBI	CTAG	2 cut(s)	246, 360
GlaI	GCGC	4 cut(s)	6, 126, 171, 204
GluI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	155, 194, 434
HapII	CCGG	3 cut(s)	69, 264, 606
HhaI	GCGC	4 cut(s)	7, 127, 172, 205
Hin1II	CATG	2 cut(s)	25, 341
Hin6I	GCGC	4 cut(s)	5, 125, 170, 203
HinP1I	GCGC	4 cut(s)	5, 125, 170, 203
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	97, 140
HpaII	CCGG	3 cut(s)	69, 264, 606
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	4 cut(s)	106, 137, 238, 400
Hpy188III	TCNNGA	2 cut(s)	94, 114
HpyAV	CCTTC	3 cut(s)	54, 262, 467
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	4 cut(s)	15, 311, 540, 619
HpyCH4V	TGCA	7 cut(s)	130, 150, 419, 479, 527, 576, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 176, 200
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	4 cut(s)	15, 311, 540, 619
Hsp92II	CATG	2 cut(s)	25, 341
HspAI	GCGC	4 cut(s)	5, 125, 170, 203
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	5 cut(s)	162, 391, 406, 509, 556
LmnI	GCTCC	2 cut(s)	32, 356
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	361, 391
MaeI	CTAG	2 cut(s)	246, 360
MaeII	ACGT	4 cut(s)	15, 311, 540, 619
MaeIII	GTNAC	2 cut(s)	241, 439
MalI	GATC	5 cut(s)	164, 393, 408, 511, 558
MboI	GATC	5 cut(s)	162, 391, 406, 509, 556
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	3 cut(s)	331, 451, 579
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	623
MnlI	CCTC	6 cut(s)	68, 74, 215, 232, 315, 407
Mox20I	TGGCCA	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	279, 562
MspI	CCGG	3 cut(s)	69, 264, 606
MspR9I	CCNGG	2 cut(s)	86, 265
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	170, 191
MwoI	GCNNNNNNNGC	3 cut(s)	156, 176, 200
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	5 cut(s)	162, 391, 406, 509, 556
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	25, 341
NmuCI	GTSAC	2 cut(s)	241, 439
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	140
Pfl23II	CGTACG	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	129, 169, 193, 281, 343
PleI	GAGTC	1 cut(s)	91
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	84
PspCI	CACGTG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	84
PspLI	CGTACG	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	224, 256
PspPPI	RGGWCCY	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	90, 230
RsaNI	GTAC	2 cut(s)	89, 229
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	5 cut(s)	128, 168, 192, 280, 342
Sau3AI	GATC	5 cut(s)	162, 391, 406, 509, 556
Sau96I	GGNCC	2 cut(s)	224, 256
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	86, 265
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	361, 391
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	2 cut(s)	224, 256
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	331, 451, 579
SsiI	CCGC	7 cut(s)	49, 80, 168, 191, 279, 342, 562
SspMI	CTAG	2 cut(s)	246, 360
StyD4I	CCNGG	2 cut(s)	84, 263
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	4 cut(s)	18, 314, 543, 622
TasI	AATT	3 cut(s)	331, 451, 579
TauI	GCSGC	4 cut(s)	170, 194, 282, 344
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TseFI	GTSAC	2 cut(s)	241, 439
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	241, 439
TspDTI	ATGAA	2 cut(s)	326, 627
TspGWI	ACGGA	2 cut(s)	133, 216
VpaK11BI	GGWCC	2 cut(s)	224, 256
XapI	RAATTY	2 cut(s)	331, 451
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	2 cut(s)	246, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.