Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Forward (+)

25964322 .. 25967380

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCGGTTCTCAACGTCTCCCTCTGTTCCAAACTCCCACCAAAACCCCCTCTCTCTTCCCCCAATCCTCACCCTTTTCGCCAACACCTCTCTCTCTCCGGCTATCCTGCGCCCCAGGTTGTAAAGAATCACCTCGAAGCCTCTAGAAACGTTGTGTTGTCTGTGGGCGACTCGGTCTGCAAGGCGAGCCTGATCGCTCTGCTCTCTGCTTCTCTGTTCGTAGCCAATCCGGCACTCGCCTTTAAGGGTGGAGGTCCGTACGGTTCAGAGGTGACTAGGGGCCAGGACCTCAGCGGCAAGGACTTTAGCGGCAAGACTTTGATCAAGCAAGACTTCAAAACGTCCATATTGAGACAAGCAAATTTCAGAGGCGCCAAGTTATTAGGTGCAAGCTTCTTTGATGCTGATCTAACAGGGGCTGATCTTTCTGATGCTGATCTAAGAGGTGTAGACTTCTCCTTGGCCAATGTGACAAAGGCAAATCTGAGCAACGCTCTCTTGGAAGGTGCACTTGCCACAGGCAACACATCTTTCAAAGGATCAAACATTACGGGTGCAGACTTCACAGATGTGCCTCTGAGAGAAGATCAACGGGAATATCTTTGCAGAATTGCTGATGGGGTAAACCCAACAACTGGAAATCCAACGCGTGAAACCTTGCTTTGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

224

Amino Acids

23.52

Weight (kDa)

8.35

Isoelectric Point (pI)

18.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	1 cut(s)	649
AciI	CCGC	3 cut(s)	5, 294, 309
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	647
AgsI	TTSAA	2 cut(s)	337, 535
AjnI	CCWGG	2 cut(s)	114, 282
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	22, 346
Alw44I	GTGCAC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	280, 462
ApaLI	GTGCAC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	2 cut(s)	112, 374
AspS9I	GGNCC	3 cut(s)	254, 280, 286
AsuHPI	GGTGA	3 cut(s)	62, 122, 283
AvaII	GGWCC	2 cut(s)	254, 286
BaeGI	GKGCMC	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	511
BbvCI	CCTCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	611
BciT130I	CCWGG	2 cut(s)	116, 284
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	22, 346
BfaI	CTAG	2 cut(s)	144, 276
BfoI	RGCGCY	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	295, 310
BlsI	GCNGC	2 cut(s)	296, 311
Bme1390I	CCNGG	2 cut(s)	116, 284
Bme18I	GGWCC	2 cut(s)	254, 286
BmgT120I	GGNCC	3 cut(s)	254, 280, 286
BmiI	GGNNCC	2 cut(s)	281, 373
BmrFI	CCNGG	2 cut(s)	116, 284
BmsI	GCATC	2 cut(s)	391, 421
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
Bpu10I	CCTNAGC	1 cut(s)	290
BsaBI	GATNNNNATC	2 cut(s)	405, 435
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	114, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	640
Bse8I	GATNNNNATC	2 cut(s)	405, 435
BseBI	CCWGG	2 cut(s)	116, 284
BseDI	CCNNGG	2 cut(s)	114, 459
BseJI	GATNNNNATC	2 cut(s)	405, 435
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	3 cut(s)	304, 476, 569
BseNI	ACTGG	1 cut(s)	640
BseSI	GKGCMC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	649
BshFI	GGCC	2 cut(s)	282, 464
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	99, 230
BsiWI	CGTACG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	22, 346
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	282, 464
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
BspACI	CCGC	3 cut(s)	5, 294, 309
BspANI	GGCC	2 cut(s)	282, 464
BspCNI	CTCAG	3 cut(s)	303, 477, 570
BspFNI	CGCG	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	281, 373
BspPI	GGATC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	114, 459
BssMI	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	116, 284
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	187, 391
BstDEI	CTNAG	4 cut(s)	290, 440, 485, 578
BstFNI	CGCG	1 cut(s)	649
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	112, 374
BstKTI	GATC	7 cut(s)	195, 324, 409, 424, 439, 542, 589
BstMAI	GTCTC	2 cut(s)	22, 346
BstMBI	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 230
BstNI	CCWGG	2 cut(s)	116, 284
BstSCI	CCNGG	2 cut(s)	114, 282
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	282, 464
Cac8I	GCNNGC	2 cut(s)	187, 391
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	2 cut(s)	112, 374
Cfr13I	GGNCC	3 cut(s)	254, 280, 286
Csp6I	GTAC	1 cut(s)	259
CviJI	RGCY	8 cut(s)	102, 140, 189, 224, 282, 393, 419, 464
CviKI_1	RGCY	8 cut(s)	102, 140, 189, 224, 282, 393, 419, 464
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	4 cut(s)	290, 440, 485, 578
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	7 cut(s)	194, 323, 408, 423, 438, 541, 588
DpnII	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	254, 286
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	114, 282
EcoT14I	CCWWGG	1 cut(s)	459
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	22
FaiI	YATR	1 cut(s)	347
FalI	AAGNNNNNCTT	4 cut(s)	317, 349, 495, 527
FbaI	TGATCA	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	295, 310
Fsp4HI	GCNGC	2 cut(s)	295, 310
FspBI	CTAG	2 cut(s)	144, 276
GlaI	GCGC	2 cut(s)	111, 373
GluI	GCNGC	2 cut(s)	295, 310
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	282, 464
HapII	CCGG	2 cut(s)	99, 230
HhaI	GCGC	2 cut(s)	112, 374
Hin1I	GRCGYC	1 cut(s)	372
Hin6I	GCGC	2 cut(s)	110, 372
HinP1I	GCGC	2 cut(s)	110, 372
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	127, 170
HpaII	CCGG	2 cut(s)	99, 230
HphI	GGTGA	3 cut(s)	62, 122, 283
Hpy166II	GTNNAC	3 cut(s)	451, 509, 625
Hpy188I	TCNGA	5 cut(s)	268, 368, 430, 486, 579
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	3 cut(s)	451, 509, 625
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	3 cut(s)	15, 150, 341
HpyCH4V	TGCA	6 cut(s)	180, 389, 509, 557, 606, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 230
HpyF3I	CTNAG	4 cut(s)	290, 440, 485, 578
HpySE526I	ACGT	3 cut(s)	15, 150, 341
Hsp92I	GRCGYC	1 cut(s)	372
HspAI	GCGC	2 cut(s)	110, 372
KasI	GGCGCC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
LweI	GCATC	2 cut(s)	391, 421
MaeI	CTAG	2 cut(s)	144, 276
MaeII	ACGT	3 cut(s)	15, 150, 341
MaeIII	GTNAC	2 cut(s)	271, 469
MalI	GATC	7 cut(s)	194, 323, 408, 423, 438, 541, 588
MboI	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
MboII	GAAGA	2 cut(s)	48, 596
MhlI	GDGCHC	1 cut(s)	511
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	3 cut(s)	361, 609, 667
MluI	ACGCGT	1 cut(s)	647
MluNI	TGGCCA	1 cut(s)	464
Mly113I	GGCGCC	1 cut(s)	372
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	668
Mox20I	TGGCCA	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	2 cut(s)	243, 670
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	294
MspI	CCGG	2 cut(s)	99, 230
MspR9I	CCNGG	2 cut(s)	116, 284
MvaI	CCWGG	2 cut(s)	116, 284
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	2 cut(s)	186, 230
NarI	GGCGCC	1 cut(s)	372
NdeII	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
NlaIV	GGNNCC	2 cut(s)	281, 373
NmuCI	GTSAC	2 cut(s)	271, 469
OliI	CACNNNNGTG	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	127
Pfl23II	CGTACG	1 cut(s)	258
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	296, 311
PleI	GAGTC	1 cut(s)	164
PluTI	GGCGCC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	114, 282
PspGI	CCWGG	2 cut(s)	114, 282
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	281, 373
PspPI	GGNCC	3 cut(s)	254, 280, 286
PspPPI	RGGWCCY	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	243, 670
SatI	GCNGC	2 cut(s)	295, 310
Sau3AI	GATC	7 cut(s)	192, 321, 406, 421, 436, 539, 586
Sau96I	GGNCC	3 cut(s)	254, 280, 286
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	116, 284
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	391, 421
SfoI	GGCGCC	1 cut(s)	373
SinI	GGWCC	2 cut(s)	254, 286
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	3 cut(s)	361, 609, 667
SsiI	CCGC	3 cut(s)	5, 294, 309
SspDI	GGCGCC	1 cut(s)	371
SspMI	CTAG	2 cut(s)	144, 276
StyD4I	CCNGG	2 cut(s)	114, 282
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	3 cut(s)	18, 153, 344
TaqI	TCGA	1 cut(s)	135
TaqII	GACCGA	1 cut(s)	163
TasI	AATT	3 cut(s)	361, 609, 667
TauI	GCSGC	2 cut(s)	297, 312
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	243, 670
Tru9I	TTAA	2 cut(s)	243, 670
TseFI	GTSAC	2 cut(s)	271, 469
Tsp45I	GTSAC	2 cut(s)	271, 469
TspGWI	ACGGA	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	507
VpaK11BI	GGWCC	2 cut(s)	254, 286
XapI	RAATTY	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	2 cut(s)	144, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.